Wall clock time and date at job start Mon Mar 30 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30943 * 1 3 3 Si 1.86797 * 119.99968 * 2 1 4 4 H 1.48490 * 109.47486 * 275.41664 * 3 2 1 5 5 H 1.48504 * 109.47453 * 35.42199 * 3 2 1 6 6 H 1.48510 * 109.46913 * 155.41680 * 3 2 1 7 7 C 1.39822 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99828 * 341.79353 * 7 2 1 9 9 C 1.41163 * 120.00384 * 161.80049 * 7 2 1 10 10 C 1.41214 * 120.03011 * 329.96812 * 9 7 2 11 11 C 1.35602 * 120.16043 * 179.97438 * 10 9 7 12 12 C 1.40554 * 120.94206 * 359.97438 * 11 10 9 13 13 S 1.76097 * 130.22852 * 180.02562 * 12 11 10 14 14 C 1.75446 * 91.68989 * 179.97438 * 13 12 11 15 15 C 1.41711 * 124.64932 * 180.02562 * 14 13 12 16 16 O 1.21392 * 120.00071 * 179.97438 * 15 14 13 17 17 C 1.34117 * 110.69825 * 359.97438 * 14 13 12 18 18 C 1.40341 * 115.50374 * 0.02562 * 17 14 13 19 19 C 1.40102 * 120.03973 * 149.94788 * 9 7 2 20 20 F 1.35095 * 120.03348 * 359.97438 * 19 9 7 21 21 H 0.97002 * 120.00052 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.91855 * 359.95624 * 10 9 7 23 23 H 1.08000 * 119.52531 * 180.02562 * 11 10 9 24 24 H 1.08001 * 120.00501 * 359.97438 * 15 14 13 25 25 H 1.08008 * 122.24874 * 179.73420 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 2.3765 2.1125 -1.3937 5 1 1.5029 2.6169 0.8115 6 1 3.5936 1.4098 0.5825 7 6 2.0085 -1.2109 -0.0005 8 1 1.5090 -2.1230 0.2913 9 6 3.3672 -1.2414 -0.3824 10 6 3.8590 -0.3067 -1.3197 11 6 5.1638 -0.3333 -1.6879 12 6 6.0477 -1.2838 -1.1486 13 16 7.7645 -1.5382 -1.4467 14 6 7.8134 -2.8841 -0.3224 15 6 8.9720 -3.6440 -0.0251 16 8 8.9100 -4.5599 0.7691 17 6 6.6041 -3.0944 0.2181 18 6 5.5899 -2.2259 -0.2138 19 6 4.2292 -2.1987 0.1685 20 9 3.7610 -3.0933 1.0660 21 1 -0.4850 0.8401 0.0004 22 1 3.1943 0.4309 -1.7444 23 1 5.5292 0.3867 -2.4053 24 1 9.9104 -3.4082 -0.5052 25 1 6.4219 -3.8825 0.9339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396297658.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:05 Heat of formation + Delta-G solvation = -46.794261 kcal Electronic energy + Delta-G solvation = -15111.072853 eV Core-core repulsion = 12288.241407 eV Total energy + Delta-G solvation = -2822.831446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.58957 -39.28409 -38.22105 -35.28660 -33.43346 -30.47140 -29.38564 -25.90217 -25.04132 -22.04270 -21.30050 -19.49890 -18.01677 -17.38917 -16.45396 -15.85956 -15.36089 -14.80756 -14.60486 -14.49017 -14.13403 -13.87743 -13.61679 -13.00037 -12.49773 -12.43290 -12.11247 -11.54765 -11.12848 -11.06359 -10.79705 -10.22398 -10.17934 -10.05980 -9.82660 -9.46833 -8.72566 -7.97691 -7.27762 -7.15465 -4.75505 0.55212 1.99222 2.00331 2.29069 2.43308 2.84568 2.98811 3.05706 3.21648 3.68789 4.03109 4.47462 4.88757 5.30070 5.38897 5.48338 5.62809 5.82552 5.99216 6.26837 6.39980 6.58825 6.76244 6.88642 6.99759 7.26681 7.49044 7.54741 7.99884 8.16993 8.37787 9.73278 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.007219 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.258397 B = 3877.487141 C = 4451.036960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.083 3.917 3 Si 0.906 3.094 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.424 4.424 8 H 0.101 0.899 9 C 0.059 3.941 10 C -0.157 4.157 11 C -0.064 4.064 12 C -0.194 4.194 13 S 0.072 5.928 14 C -0.297 4.297 15 C 0.411 3.589 16 O -0.470 6.470 17 C -0.007 4.007 18 C -0.084 4.084 19 C 0.015 3.985 20 F -0.145 7.145 21 H 0.292 0.708 22 H 0.122 0.878 23 H 0.112 0.888 24 H 0.098 0.902 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.547 1.976 -3.190 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.164 1.164 7 C -0.451 4.451 8 H 0.119 0.881 9 C 0.053 3.947 10 C -0.178 4.178 11 C -0.087 4.087 12 C -0.309 4.309 13 S 0.336 5.664 14 C -0.413 4.413 15 C 0.271 3.729 16 O -0.346 6.346 17 C -0.041 4.041 18 C -0.090 4.090 19 C -0.009 4.009 20 F -0.124 7.124 21 H 0.103 0.897 22 H 0.139 0.861 23 H 0.130 0.870 24 H 0.115 0.885 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.353 2.219 -3.633 11.194 hybrid contribution -1.077 0.050 0.886 1.395 sum 9.276 2.270 -2.746 9.937 Atomic orbital electron populations 1.69711 1.08117 1.30992 1.31956 1.26216 0.94880 1.01847 0.90997 0.86387 0.81644 0.79495 0.79399 1.18903 1.20776 1.16386 1.19430 0.92358 0.96857 1.36476 0.88147 1.17475 0.93405 0.91548 0.92225 1.20762 0.95042 1.02061 0.99911 1.19784 0.92562 0.96856 0.99492 1.22010 0.96114 1.04878 1.07934 1.83336 1.05957 1.30837 1.46318 1.23316 1.00332 1.07485 1.10172 1.21800 0.90836 0.80552 0.79678 1.90558 1.87964 1.26746 1.29357 1.20530 0.90706 0.96717 0.96143 1.17896 0.93323 0.97698 1.00123 1.17508 0.89335 0.97023 0.97063 1.91321 1.88985 1.66372 1.65722 0.89741 0.86079 0.86996 0.88544 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.25 13.93 55.54 0.77 -18.48 15 2 C 0.08 1.98 5.40 -17.34 -0.09 1.89 15 3 Si 0.91 18.43 24.51 -169.99 -4.17 14.26 15 4 H -0.26 -5.00 6.70 56.52 0.38 -4.62 15 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 6 H -0.24 -5.05 6.87 56.52 0.39 -4.66 15 7 C -0.42 -10.76 9.21 -37.88 -0.35 -11.11 15 8 H 0.10 2.74 7.95 -52.48 -0.42 2.32 15 9 C 0.06 1.40 5.09 -106.96 -0.54 0.85 15 10 C -0.16 -3.34 7.07 -39.39 -0.28 -3.62 15 11 C -0.06 -1.24 9.98 -39.65 -0.40 -1.64 15 12 C -0.19 -3.80 6.52 -37.90 -0.25 -4.04 15 13 S 0.07 1.13 23.22 -107.50 -2.50 -1.37 15 14 C -0.30 -4.92 6.13 -39.71 -0.24 -5.16 15 15 C 0.41 5.89 11.45 32.06 0.37 6.26 15 16 O -0.47 -8.23 17.42 5.46 0.10 -8.14 15 17 C -0.01 -0.13 9.66 -40.24 -0.39 -0.51 15 18 C -0.08 -1.79 5.86 -107.10 -0.63 -2.41 15 19 C 0.02 0.35 7.39 -37.69 -0.28 0.08 15 20 F -0.15 -3.46 16.64 2.25 0.04 -3.43 15 21 H 0.29 6.37 8.30 -40.82 -0.34 6.04 15 22 H 0.12 2.46 4.73 -52.49 -0.25 2.21 15 23 H 0.11 1.79 8.06 -52.49 -0.42 1.37 15 24 H 0.10 0.98 8.06 -52.49 -0.42 0.55 15 25 H 0.14 2.66 7.89 -52.48 -0.41 2.25 15 LS Contribution 245.13 15.07 3.69 3.69 Total: -1.00 -26.32 245.13 -6.24 -32.56 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -1.10 Total: 0.31 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -3.08 Total: -19.42 kcal Atomic # 7 Polarization: -19.25 SS G_CDS: 0.77 Total: -18.48 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.10 Total: -8.14 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.17 Total: 14.26 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.50 Total: -1.37 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -26.32 -6.24 -32.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297658.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.239 kcal (2) G-P(sol) polarization free energy of solvation -26.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds