Wall clock time and date at job start Mon Mar 30 2020 06:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86800 * 120.00273 * 2 1 4 4 H 1.48499 * 109.46885 * 270.00158 * 3 2 1 5 5 H 1.48495 * 109.47062 * 29.99630 * 3 2 1 6 6 H 1.48493 * 109.47354 * 149.99773 * 3 2 1 7 7 C 1.40420 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99958 * 162.68775 * 7 2 1 9 9 C 1.40162 * 119.99945 * 342.68255 * 7 2 1 10 10 C 1.40587 * 120.20883 * 334.24366 * 9 7 2 11 11 C 1.36202 * 120.52552 * 180.02562 * 10 9 7 12 12 F 1.35101 * 119.52113 * 179.97438 * 11 10 9 13 13 C 1.40301 * 120.96500 * 359.95488 * 11 10 9 14 14 C 1.46377 * 119.52874 * 180.02562 * 13 11 10 15 15 O 1.21379 * 119.99961 * 0.02562 * 14 13 11 16 16 C 1.41331 * 120.94319 * 0.04151 * 13 11 10 17 17 S 1.76023 * 130.72953 * 179.97438 * 16 13 11 18 18 C 1.75521 * 91.49067 * 180.02562 * 17 16 13 19 19 C 1.32735 * 110.63716 * 359.73866 * 18 17 16 20 20 C 1.39581 * 119.89282 * 359.97438 * 16 13 11 21 21 H 0.96998 * 119.99999 * 0.02562 * 1 2 3 22 22 H 1.07991 * 119.73901 * 0.02562 * 10 9 7 23 23 H 1.08004 * 120.00156 * 179.97438 * 14 13 11 24 24 H 1.08003 * 124.68189 * 180.02562 * 18 17 16 25 25 H 1.08001 * 122.09159 * 180.28725 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2397 1.6177 0.0000 4 1 2.4871 2.0463 -1.4001 5 1 1.4372 2.6526 0.6999 6 1 3.5372 1.4401 0.7000 7 6 2.0077 -1.2161 0.0005 8 1 3.0510 -1.2374 -0.2778 9 6 1.3545 -2.4022 0.3624 10 6 0.2348 -2.3624 1.2116 11 6 -0.4045 -3.5111 1.5678 12 9 -1.4783 -3.4494 2.3854 13 6 0.0354 -4.7577 1.0977 14 6 -0.6755 -5.9723 1.5000 15 8 -1.6386 -5.8966 2.2348 16 6 1.1555 -4.8574 0.2415 17 16 1.9200 -6.2639 -0.4905 18 6 3.1191 -5.2567 -1.2833 19 6 2.9176 -3.9763 -0.9970 20 6 1.8389 -3.7041 -0.1471 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1213 -1.4136 1.5845 23 1 -0.3436 -6.9359 1.1423 24 1 3.9087 -5.6271 -1.9202 25 1 3.5480 -3.1938 -1.3928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396297869.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:13 Heat of formation + Delta-G solvation = -67.427864 kcal Electronic energy + Delta-G solvation = -15330.378353 eV Core-core repulsion = 12506.652167 eV Total energy + Delta-G solvation = -2823.726186 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.68473 -40.12122 -39.11595 -36.55734 -35.07649 -32.25514 -29.87226 -28.05541 -24.83285 -24.21943 -22.55007 -20.69248 -20.03584 -18.60367 -17.60266 -16.98982 -16.69329 -16.55193 -16.43853 -15.88296 -15.11157 -14.89198 -14.87205 -14.20915 -14.09038 -13.73850 -13.47963 -13.08037 -12.90104 -12.49675 -12.38485 -11.94770 -11.69931 -11.50722 -11.22251 -10.43561 -10.23406 -9.25864 -9.03670 -8.67439 -6.75355 -0.07433 0.21648 0.77854 1.23584 1.29695 1.36884 1.54638 1.60129 1.92719 2.05568 2.45901 3.29073 3.59073 3.73928 4.17370 4.35676 4.62270 4.74394 4.78251 4.82222 4.91551 5.22172 5.31856 5.55804 5.69831 5.73571 5.82963 6.18701 6.34839 6.50863 6.77290 7.79865 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021682 B = 0.009294 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.072908 B = 3012.007143 C = 4221.979573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.245 1.245 7 C -0.386 4.386 8 H 0.121 0.879 9 C 0.147 3.853 10 C -0.266 4.266 11 C 0.182 3.818 12 F -0.154 7.154 13 C -0.381 4.381 14 C 0.381 3.619 15 O -0.542 6.542 16 C -0.042 4.042 17 S 0.090 5.910 18 C -0.248 4.248 19 C -0.083 4.083 20 C -0.211 4.211 21 H 0.310 0.690 22 H 0.120 0.880 23 H 0.112 0.888 24 H 0.193 0.807 25 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.045 -0.238 -4.330 9.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.198 4.198 3 Si 0.820 3.180 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.168 1.168 7 C -0.409 4.409 8 H 0.138 0.862 9 C 0.140 3.860 10 C -0.288 4.288 11 C 0.160 3.840 12 F -0.133 7.133 13 C -0.389 4.389 14 C 0.251 3.749 15 O -0.425 6.425 16 C -0.159 4.159 17 S 0.352 5.648 18 C -0.381 4.381 19 C -0.112 4.112 20 C -0.219 4.219 21 H 0.122 0.878 22 H 0.138 0.862 23 H 0.128 0.872 24 H 0.210 0.790 25 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.095 -1.639 -3.986 8.301 hybrid contribution -0.217 2.206 0.257 2.232 sum 6.877 0.567 -3.729 7.843 Atomic orbital electron populations 1.69742 1.10210 1.33455 1.24682 1.27460 0.95580 1.06146 0.90631 0.84861 0.79219 0.73393 0.80573 1.17348 1.18963 1.16803 1.20506 0.99420 0.90858 1.30125 0.86166 1.18570 0.89155 0.91460 0.86816 1.20574 1.03938 0.95894 1.08355 1.17528 0.83185 0.94600 0.88639 1.91386 1.53896 1.97395 1.70578 1.19122 1.07283 0.94057 1.18480 1.23553 0.81342 0.92849 0.77187 1.90453 1.27656 1.90616 1.33816 1.22565 0.97260 0.97632 0.98460 1.83302 1.26304 1.07460 1.47784 1.25219 1.06520 0.95417 1.10979 1.19797 0.96645 0.97208 0.97550 1.19490 1.02278 0.92799 1.07325 0.87785 0.86176 0.87192 0.78959 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -33.69 10.98 21.91 0.24 -33.45 15 2 C 0.03 1.08 5.13 85.41 0.44 1.52 15 3 Si 1.00 29.22 29.60 68.60 2.03 31.25 15 4 H -0.25 -6.87 7.11 99.48 0.71 -6.16 15 5 H -0.27 -7.62 7.11 99.48 0.71 -6.91 15 6 H -0.25 -6.88 7.11 99.48 0.71 -6.17 15 7 C -0.39 -16.70 8.80 23.27 0.20 -16.49 15 8 H 0.12 4.57 7.53 -2.91 -0.02 4.55 15 9 C 0.15 7.10 5.75 -19.66 -0.11 6.98 15 10 C -0.27 -13.83 8.53 22.37 0.19 -13.64 15 11 C 0.18 9.66 7.19 22.30 0.16 9.82 15 12 F -0.15 -8.40 15.38 44.97 0.69 -7.71 15 13 C -0.38 -18.54 5.90 -19.90 -0.12 -18.66 15 14 C 0.38 17.17 11.26 69.94 0.79 17.96 15 15 O -0.54 -27.92 16.02 -3.34 -0.05 -27.97 15 16 C -0.04 -1.87 6.36 23.36 0.15 -1.72 15 17 S 0.09 2.97 22.70 -56.49 -1.28 1.68 15 18 C -0.25 -7.54 11.12 66.65 0.74 -6.79 15 19 C -0.08 -2.98 9.75 21.52 0.21 -2.77 15 20 C -0.21 -9.41 6.02 -19.95 -0.12 -9.53 15 21 H 0.31 12.03 8.29 -92.71 -0.77 11.26 15 22 H 0.12 6.36 6.18 -2.91 -0.02 6.34 15 23 H 0.11 4.00 7.65 -2.91 -0.02 3.98 15 24 H 0.19 4.22 8.06 -2.91 -0.02 4.20 15 25 H 0.15 4.64 7.72 -2.91 -0.02 4.62 15 Total: -1.00 -59.20 247.22 5.40 -53.80 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.24 Total: 15.71 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 2.53 Total: -33.31 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.24 Total: -33.45 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 0.69 Total: -7.71 kcal Atomic # 14 Polarization: 29.22 SS G_CDS: 2.03 Total: 31.25 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.28 Total: 1.68 kcal Total: -59.20 5.40 -53.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297869.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.627 kcal (2) G-P(sol) polarization free energy of solvation -59.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds