Wall clock time and date at job start Mon Mar 30 2020 06:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30376 * 1 3 3 Si 1.86800 * 119.99693 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99689 * 3 2 1 6 6 H 1.48500 * 109.47389 * 60.00037 * 3 2 1 7 7 C 1.40789 * 120.00540 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.39225 * 119.99587 * 0.02562 * 7 2 1 10 10 S 1.75187 * 124.65221 * 359.69343 * 9 7 2 11 11 C 1.75863 * 92.77767 * 179.97438 * 10 9 7 12 12 C 1.40021 * 129.66746 * 180.02562 * 11 10 9 13 13 C 1.37435 * 120.52838 * 180.25473 * 12 11 10 14 14 C 1.39220 * 120.21404 * 0.02562 * 13 12 11 15 15 F 1.35097 * 119.84839 * 179.97438 * 14 13 12 16 16 C 1.37201 * 120.29148 * 0.02562 * 14 13 12 17 17 C 1.39924 * 110.74269 * 0.30426 * 11 10 9 18 18 C 1.39096 * 124.64735 * 179.97438 * 9 7 2 19 19 C 1.41299 * 123.29629 * 359.97438 * 18 9 7 20 20 O 1.21481 * 119.99680 * 179.97438 * 19 18 9 21 21 H 0.97005 * 120.00271 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.73778 * 0.27905 * 12 11 10 23 23 H 1.07994 * 119.89138 * 180.02562 * 13 12 11 24 24 H 1.08005 * 119.80173 * 180.02562 * 16 14 13 25 25 H 1.07990 * 119.99764 * 359.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3038 0.0000 0.0000 3 14 2.2377 1.6178 0.0000 4 1 3.6977 1.3465 -0.0006 5 1 1.8789 2.3964 -1.2126 6 1 1.8789 2.3965 1.2125 7 6 2.0078 -1.2192 0.0005 8 1 3.0878 -1.2192 0.0001 9 6 1.3117 -2.4249 0.0005 10 16 -0.4344 -2.5671 0.0076 11 6 -0.3768 -4.3248 0.0023 12 6 -1.4248 -5.2534 0.0036 13 6 -1.1622 -6.6024 0.0039 14 6 0.1526 -7.0602 0.0035 15 9 0.4022 -8.3879 0.0043 16 6 1.1957 -6.1690 0.0032 17 6 0.9473 -4.7772 0.0022 18 6 1.9073 -3.6819 0.0005 19 6 3.3068 -3.8772 0.0000 20 8 3.7629 -5.0031 0.0005 21 1 -0.4851 0.8401 -0.0004 22 1 -2.4477 -4.9068 0.0040 23 1 -1.9784 -7.3096 0.0045 24 1 2.2126 -6.5329 0.0025 25 1 3.9707 -3.0255 -0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396297896.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:34 Heat of formation + Delta-G solvation = -89.898577 kcal Electronic energy + Delta-G solvation = -15093.440029 eV Core-core repulsion = 12268.739440 eV Total energy + Delta-G solvation = -2824.700589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.83814 -40.23040 -38.66587 -36.96287 -34.78089 -31.51883 -30.99482 -28.15144 -25.38079 -23.70502 -23.18094 -20.76011 -19.47237 -18.14069 -18.01253 -17.48238 -16.67342 -16.53821 -16.39203 -15.62071 -14.96785 -14.91718 -14.63739 -14.18389 -13.96847 -13.79578 -13.74083 -13.22852 -13.19843 -12.50255 -12.10741 -11.98959 -11.90611 -11.23145 -11.10336 -10.24928 -9.99525 -9.51879 -9.18966 -8.36826 -7.01870 0.14687 0.30297 0.68698 1.21424 1.36601 1.53302 1.60527 1.71050 2.08677 2.22576 2.64130 3.16527 3.37375 3.95718 3.98958 4.23695 4.55829 4.57565 4.66308 5.00189 5.04590 5.20127 5.29708 5.32847 5.48681 5.74720 5.76894 6.07468 6.14857 6.19105 7.28823 7.63943 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.034551 B = 0.007439 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.205347 B = 3763.030119 C = 4563.391102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.019 3.981 3 Si 1.017 2.983 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.254 1.254 7 C -0.338 4.338 8 H 0.127 0.873 9 C 0.048 3.952 10 S 0.158 5.842 11 C -0.269 4.269 12 C -0.038 4.038 13 C -0.192 4.192 14 C 0.092 3.908 15 F -0.150 7.150 16 C -0.193 4.193 17 C 0.033 3.967 18 C -0.457 4.457 19 C 0.386 3.614 20 O -0.587 6.587 21 H 0.328 0.672 22 H 0.154 0.846 23 H 0.162 0.838 24 H 0.115 0.885 25 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 5.726 0.011 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.207 4.207 3 Si 0.833 3.167 4 H -0.169 1.169 5 H -0.179 1.179 6 H -0.178 1.178 7 C -0.370 4.370 8 H 0.144 0.856 9 C -0.073 4.073 10 S 0.417 5.583 11 C -0.382 4.382 12 C -0.060 4.060 13 C -0.213 4.213 14 C 0.071 3.929 15 F -0.129 7.129 16 C -0.213 4.213 17 C 0.027 3.973 18 C -0.463 4.463 19 C 0.263 3.737 20 O -0.479 6.479 21 H 0.143 0.857 22 H 0.172 0.828 23 H 0.179 0.821 24 H 0.133 0.867 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.108 6.253 0.019 8.074 hybrid contribution 1.553 -0.966 -0.011 1.829 sum -3.555 5.287 0.008 6.371 Atomic orbital electron populations 1.68419 1.09609 1.34490 1.24795 1.27623 0.95912 1.06335 0.90817 0.84556 0.79406 0.72707 0.79987 1.16946 1.17854 1.17842 1.20318 0.97779 0.88804 1.30076 0.85576 1.22021 0.96733 0.95573 0.93021 1.84466 1.02845 0.90915 1.80030 1.24135 0.96283 1.03963 1.13817 1.20564 0.98088 0.90756 0.96595 1.20952 0.94262 0.96570 1.09477 1.17530 0.94618 0.76502 1.04274 1.91403 1.95397 1.31775 1.94349 1.21026 0.98718 0.92573 1.09030 1.18939 0.92470 0.92128 0.93774 1.19211 0.95982 0.91057 1.40047 1.21554 0.89479 0.91006 0.71690 1.90333 1.80421 1.29517 1.47618 0.85660 0.82818 0.82083 0.86681 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -27.87 10.54 21.97 0.23 -27.64 15 2 C 0.02 0.70 5.51 85.53 0.47 1.17 15 3 Si 1.02 26.03 29.57 68.60 2.03 28.06 15 4 H -0.25 -6.24 7.11 99.48 0.71 -5.53 15 5 H -0.25 -6.25 7.11 99.48 0.71 -5.55 15 6 H -0.25 -6.25 7.11 99.48 0.71 -5.54 15 7 C -0.34 -13.97 8.93 23.13 0.21 -13.76 15 8 H 0.13 4.76 6.62 -2.91 -0.02 4.74 15 9 C 0.05 2.25 6.14 22.71 0.14 2.38 15 10 S 0.16 6.91 20.01 -56.49 -1.13 5.78 15 11 C -0.27 -12.20 6.43 23.11 0.15 -12.05 15 12 C -0.04 -1.43 10.06 22.51 0.23 -1.20 15 13 C -0.19 -7.05 10.01 22.32 0.22 -6.83 15 14 C 0.09 3.96 7.27 22.26 0.16 4.12 15 15 F -0.15 -6.15 17.26 44.97 0.78 -5.37 15 16 C -0.19 -9.61 9.49 22.80 0.22 -9.39 15 17 C 0.03 1.70 6.00 -20.18 -0.12 1.57 15 18 C -0.46 -23.26 5.90 -20.41 -0.12 -23.38 15 19 C 0.39 19.13 10.98 68.57 0.75 19.88 15 20 O -0.59 -32.30 15.43 -3.66 -0.06 -32.36 15 21 H 0.33 10.25 8.29 -92.70 -0.77 9.49 15 22 H 0.15 4.61 8.06 -2.91 -0.02 4.58 15 23 H 0.16 4.57 8.06 -2.91 -0.02 4.54 15 24 H 0.12 6.14 6.26 -2.91 -0.02 6.13 15 25 H 0.09 3.73 6.82 -2.92 -0.02 3.71 15 Total: -1.00 -57.84 244.93 5.40 -52.43 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.25 Total: 16.57 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 2.31 Total: -37.47 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.23 Total: -27.64 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.06 Total: -32.36 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.78 Total: -5.37 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: 2.03 Total: 28.06 kcal Atomic # 16 Polarization: 6.91 SS G_CDS: -1.13 Total: 5.78 kcal Total: -57.84 5.40 -52.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297896.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.465 kcal (2) G-P(sol) polarization free energy of solvation -57.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds