Wall clock time and date at job start Mon Mar 30 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47081 * 83.29848 * 3 2 1 5 5 H 1.48502 * 109.47320 * 203.30378 * 3 2 1 6 6 H 1.48501 * 109.47123 * 323.30320 * 3 2 1 7 7 C 1.40212 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99754 * 24.02980 * 7 2 1 9 9 C 1.40296 * 120.00075 * 204.02792 * 7 2 1 10 10 C 1.40287 * 120.57912 * 26.59171 * 9 7 2 11 11 C 1.38949 * 120.48732 * 179.74593 * 10 9 7 12 12 S 1.76236 * 129.72167 * 180.22406 * 11 10 9 13 13 C 1.75411 * 91.64188 * 180.28887 * 12 11 10 14 14 C 1.32643 * 110.92446 * 359.97438 * 13 12 11 15 15 F 1.35096 * 122.08368 * 180.02562 * 14 13 12 16 16 C 1.40673 * 120.95880 * 0.53967 * 11 10 9 17 17 C 1.41250 * 119.78039 * 359.74372 * 16 11 10 18 18 C 1.38488 * 120.71841 * 359.97438 * 17 16 11 19 19 C 1.46278 * 120.39199 * 180.02562 * 18 17 16 20 20 O 1.21375 * 120.00079 * 359.97438 * 19 18 17 21 21 H 0.97002 * 119.99579 * 173.07894 * 1 2 3 22 22 H 1.07997 * 119.76041 * 359.97438 * 10 9 7 23 23 H 1.07996 * 124.53480 * 179.97438 * 13 12 11 24 24 H 1.08001 * 119.64380 * 179.97438 * 17 16 11 25 25 H 1.07998 * 119.99474 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3469 2.1281 1.3905 5 1 3.6020 1.4035 -0.5539 6 1 1.5162 2.6077 -0.8367 7 6 2.0080 -1.2143 0.0005 8 1 1.5382 -2.1092 -0.3799 9 6 3.3198 -1.2667 0.4953 10 6 3.7559 -0.3465 1.4602 11 6 5.0539 -0.4034 1.9527 12 16 5.8479 0.6117 3.1549 13 6 7.3464 -0.2864 2.9971 14 6 7.2229 -1.2613 2.1063 15 9 8.2435 -2.0948 1.8084 16 6 5.9617 -1.3733 1.4899 17 6 5.5517 -2.3090 0.5144 18 6 4.2635 -2.2834 0.0069 19 6 3.8464 -3.2561 -1.0028 20 8 4.6313 -4.0919 -1.4011 21 1 -0.4849 -0.8340 -0.1012 22 1 3.0767 0.4095 1.8257 23 1 8.2488 -0.0739 3.5511 24 1 6.2506 -3.0524 0.1603 25 1 2.8400 -3.2306 -1.3939 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396298436.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:05 Heat of formation + Delta-G solvation = -57.835527 kcal Electronic energy + Delta-G solvation = -15232.748474 eV Core-core repulsion = 12409.438243 eV Total energy + Delta-G solvation = -2823.310231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.41404 -38.85082 -37.45233 -35.19647 -33.26530 -30.40582 -29.57460 -25.81048 -23.90055 -22.09069 -21.21804 -19.27860 -18.74785 -17.56163 -16.18240 -15.56855 -15.21730 -15.18746 -14.70103 -14.49810 -13.69174 -13.54378 -13.34171 -13.01855 -12.91278 -12.31725 -11.91825 -11.56824 -11.31415 -11.03354 -10.52202 -10.46816 -10.08019 -9.94046 -9.42291 -8.92631 -8.86368 -8.15684 -7.76091 -7.14563 -5.14391 1.41694 1.48669 2.14176 2.53072 2.71013 2.95536 3.07218 3.22353 3.31898 3.61351 4.04111 4.84589 4.94074 5.16863 5.45186 5.55892 5.94456 6.04540 6.16709 6.29372 6.51913 6.58972 6.83136 6.99013 7.04961 7.15550 7.22995 7.69139 7.82792 8.01771 8.29995 9.31967 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.010504 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.445753 B = 2665.074624 C = 3873.175196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.044 3.956 3 Si 1.062 2.938 4 H -0.267 1.267 5 H -0.253 1.253 6 H -0.279 1.279 7 C -0.454 4.454 8 H 0.096 0.904 9 C 0.139 3.861 10 C -0.234 4.234 11 C -0.020 4.020 12 S 0.054 5.946 13 C -0.314 4.314 14 C 0.154 3.846 15 F -0.139 7.139 16 C -0.265 4.265 17 C 0.052 3.948 18 C -0.284 4.284 19 C 0.393 3.607 20 O -0.509 6.509 21 H 0.298 0.702 22 H 0.117 0.883 23 H 0.161 0.839 24 H 0.117 0.883 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 2.531 2.369 5.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.183 4.183 3 Si 0.884 3.116 4 H -0.193 1.193 5 H -0.177 1.177 6 H -0.205 1.205 7 C -0.480 4.480 8 H 0.114 0.886 9 C 0.132 3.868 10 C -0.261 4.261 11 C -0.136 4.136 12 S 0.314 5.686 13 C -0.448 4.448 14 C 0.124 3.876 15 F -0.118 7.118 16 C -0.270 4.270 17 C 0.032 3.968 18 C -0.286 4.286 19 C 0.259 3.741 20 O -0.388 6.388 21 H 0.111 0.889 22 H 0.134 0.866 23 H 0.178 0.822 24 H 0.135 0.865 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.515 4.832 3.128 6.745 hybrid contribution 0.624 -2.946 -0.694 3.090 sum 4.139 1.887 2.434 5.159 Atomic orbital electron populations 1.70463 1.08300 1.34647 1.24398 1.27707 0.95436 1.05090 0.90109 0.83714 0.76519 0.72417 0.78924 1.19298 1.17703 1.20544 1.20921 0.97196 0.98106 1.31813 0.88577 1.18423 0.91291 0.88806 0.88326 1.20221 0.93868 1.06783 1.05256 1.22110 0.97048 0.96639 0.97790 1.83807 1.03042 1.36610 1.45178 1.24345 1.04030 1.05625 1.10798 1.16417 0.84302 0.90141 0.96746 1.91423 1.57688 1.70290 1.92407 1.17398 0.93340 1.06057 1.10195 1.20944 0.94520 0.92277 0.89059 1.21255 0.94686 1.05840 1.06857 1.23467 0.91994 0.79735 0.78903 1.90441 1.56984 1.35528 1.55888 0.88929 0.86587 0.82186 0.86461 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.70 13.64 55.56 0.76 -15.94 15 2 C 0.04 0.95 5.33 -17.29 -0.09 0.85 15 3 Si 1.06 20.66 25.03 -169.99 -4.25 16.40 15 4 H -0.27 -5.02 6.70 56.52 0.38 -4.64 15 5 H -0.25 -5.02 7.03 56.52 0.40 -4.62 15 6 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 7 C -0.45 -9.90 8.80 -38.07 -0.34 -10.24 15 8 H 0.10 2.03 6.87 -52.48 -0.36 1.67 15 9 C 0.14 3.08 5.29 -104.78 -0.55 2.53 15 10 C -0.23 -5.13 7.40 -38.55 -0.29 -5.42 15 11 C -0.02 -0.44 6.44 -38.40 -0.25 -0.68 15 12 S 0.05 0.98 23.29 -107.50 -2.50 -1.52 15 13 C -0.31 -5.57 11.08 28.84 0.32 -5.25 15 14 C 0.15 3.06 7.33 -40.50 -0.30 2.77 15 15 F -0.14 -2.69 17.27 2.25 0.04 -2.65 15 16 C -0.27 -5.72 5.86 -106.86 -0.63 -6.34 15 17 C 0.05 1.13 9.56 -38.35 -0.37 0.77 15 18 C -0.28 -6.18 6.03 -103.00 -0.62 -6.80 15 19 C 0.39 7.98 11.02 33.96 0.37 8.36 15 20 O -0.51 -11.32 17.13 5.47 0.09 -11.22 15 21 H 0.30 6.22 8.73 -40.82 -0.36 5.86 15 22 H 0.12 2.46 4.75 -52.49 -0.25 2.21 15 23 H 0.16 2.37 8.06 -52.49 -0.42 1.95 15 24 H 0.12 2.46 7.60 -52.49 -0.40 2.07 15 25 H 0.09 1.63 6.69 -52.49 -0.35 1.27 15 LS Contribution 244.01 15.07 3.68 3.68 Total: -1.00 -23.87 244.01 -5.88 -29.76 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -0.96 Total: 0.96 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.73 Total: -19.47 kcal Atomic # 7 Polarization: -16.70 SS G_CDS: 0.76 Total: -15.94 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.25 Total: 16.40 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.50 Total: -1.52 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -23.87 -5.88 -29.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396298436.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.079 kcal (2) G-P(sol) polarization free energy of solvation -23.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds