Wall clock time and date at job start Mon Mar 30 2020 06:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30381 * 1 3 3 Si 1.86803 * 120.00481 * 2 1 4 4 H 1.48489 * 109.47087 * 239.99990 * 3 2 1 5 5 H 1.48507 * 109.46769 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46919 * 119.99510 * 3 2 1 7 7 C 1.40787 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.39160 * 120.00202 * 0.02562 * 7 2 1 10 10 S 1.75200 * 124.64985 * 0.52349 * 9 7 2 11 11 C 1.75840 * 92.76723 * 179.97438 * 10 9 7 12 12 C 1.39928 * 129.72809 * 179.46201 * 11 10 9 13 13 C 1.37770 * 120.32671 * 179.97438 * 12 11 10 14 14 F 1.35097 * 119.91053 * 179.97438 * 13 12 11 15 15 C 1.39242 * 120.17551 * 359.97438 * 13 12 11 16 16 C 1.35972 * 120.45700 * 0.02775 * 15 13 12 17 17 C 1.39956 * 110.76373 * 359.70943 * 11 10 9 18 18 C 1.39112 * 124.65337 * 179.97438 * 9 7 2 19 19 C 1.41343 * 123.28849 * 359.97438 * 18 9 7 20 20 O 1.21476 * 119.99950 * 180.02562 * 19 18 9 21 21 H 0.97002 * 119.99402 * 359.97438 * 1 2 3 22 22 H 1.08002 * 119.83502 * 359.96640 * 12 11 10 23 23 H 1.07998 * 119.77344 * 180.02562 * 15 13 12 24 24 H 1.08002 * 119.72195 * 179.97438 * 16 15 13 25 25 H 1.08003 * 119.99849 * 0.04167 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3038 0.0000 0.0000 3 14 2.2380 1.6177 0.0000 4 1 3.0917 1.6963 -1.2124 5 1 1.2729 2.7465 -0.0006 6 1 3.0916 1.6963 1.2125 7 6 2.0077 -1.2193 0.0005 8 1 3.0877 -1.2193 0.0001 9 6 1.3119 -2.4244 0.0005 10 16 -0.4343 -2.5665 -0.0133 11 6 -0.3766 -4.3239 -0.0052 12 6 -1.4228 -5.2531 0.0003 13 6 -1.1533 -6.6042 0.0058 14 9 -2.1699 -7.4939 0.0116 15 6 0.1641 -7.0550 0.0053 16 6 1.1958 -6.1693 0.0001 17 6 0.9477 -4.7768 0.0011 18 6 1.9074 -3.6816 0.0005 19 6 3.3073 -3.8770 0.0000 20 8 3.7635 -5.0028 -0.0004 21 1 -0.4849 0.8401 0.0004 22 1 -2.4467 -4.9094 0.0004 23 1 0.3680 -8.1156 0.0092 24 1 2.2130 -6.5321 0.0002 25 1 3.9713 -3.0252 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396298493.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:41 Heat of formation + Delta-G solvation = -88.690829 kcal Electronic energy + Delta-G solvation = -15061.686510 eV Core-core repulsion = 12237.038293 eV Total energy + Delta-G solvation = -2824.648217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.72278 -40.25966 -38.65156 -36.95401 -34.74541 -31.84245 -30.90799 -27.93302 -25.44614 -23.51227 -23.37606 -20.68777 -19.44840 -18.69994 -17.82114 -17.09804 -16.69054 -16.46014 -16.32371 -15.71028 -14.89295 -14.86074 -14.57057 -14.39530 -14.03331 -13.73807 -13.71236 -13.21827 -13.06755 -12.59654 -12.14433 -11.98300 -11.96119 -11.15406 -11.10301 -10.38353 -9.97227 -9.39523 -9.18356 -8.45396 -6.97399 0.14392 0.32358 0.67241 1.15824 1.36678 1.56640 1.56984 1.69000 2.08315 2.23417 2.64447 3.19496 3.49232 3.93281 4.05517 4.08903 4.51958 4.59025 4.67311 4.85285 5.07362 5.18816 5.28156 5.40519 5.51265 5.75405 5.78154 6.08259 6.16907 6.20788 7.31351 7.64322 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.031198 B = 0.007575 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.285543 B = 3695.381131 C = 4582.799364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.019 3.981 3 Si 1.018 2.982 4 H -0.249 1.249 5 H -0.257 1.257 6 H -0.249 1.249 7 C -0.340 4.340 8 H 0.129 0.871 9 C 0.048 3.952 10 S 0.154 5.846 11 C -0.241 4.241 12 C -0.102 4.102 13 C 0.034 3.966 14 F -0.148 7.148 15 C -0.135 4.135 16 C -0.119 4.119 17 C 0.004 3.996 18 C -0.452 4.452 19 C 0.389 3.611 20 O -0.583 6.583 21 H 0.328 0.672 22 H 0.140 0.860 23 H 0.150 0.850 24 H 0.127 0.873 25 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 4.971 -0.009 5.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.207 4.207 3 Si 0.834 3.166 4 H -0.173 1.173 5 H -0.180 1.180 6 H -0.173 1.173 7 C -0.372 4.372 8 H 0.147 0.853 9 C -0.073 4.073 10 S 0.413 5.587 11 C -0.354 4.354 12 C -0.125 4.125 13 C 0.013 3.987 14 F -0.127 7.127 15 C -0.156 4.156 16 C -0.139 4.139 17 C -0.002 4.002 18 C -0.459 4.459 19 C 0.265 3.735 20 O -0.474 6.474 21 H 0.143 0.857 22 H 0.158 0.842 23 H 0.168 0.832 24 H 0.145 0.855 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.670 5.522 -0.023 6.134 hybrid contribution 0.961 -0.784 0.019 1.241 sum -1.709 4.738 -0.004 5.037 Atomic orbital electron populations 1.68410 1.09684 1.34534 1.25059 1.27650 0.95872 1.06449 0.90722 0.84630 0.78602 0.72159 0.81227 1.17271 1.18041 1.17268 1.20256 0.97849 0.88743 1.30329 0.85305 1.22015 0.96253 0.95840 0.93206 1.84601 1.03494 0.90607 1.79987 1.23758 0.95810 1.03604 1.12245 1.20398 0.98744 0.90456 1.02950 1.17297 0.84506 0.86348 1.10543 1.91401 1.58764 1.67624 1.94896 1.20717 0.90419 1.01063 1.03388 1.20853 0.99452 0.91407 1.02181 1.19337 0.91842 0.93763 0.95286 1.19231 0.96106 0.90913 1.39627 1.21522 0.89233 0.91100 0.71636 1.90317 1.80326 1.29352 1.47398 0.85717 0.84248 0.83219 0.85521 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -28.47 10.54 21.97 0.23 -28.23 15 2 C 0.02 0.69 5.51 85.53 0.47 1.16 15 3 Si 1.02 26.05 29.57 68.60 2.03 28.08 15 4 H -0.25 -6.28 7.11 99.48 0.71 -5.57 15 5 H -0.26 -6.13 7.11 99.48 0.71 -5.42 15 6 H -0.25 -6.28 7.11 99.48 0.71 -5.57 15 7 C -0.34 -13.95 8.92 23.12 0.21 -13.74 15 8 H 0.13 4.74 6.61 -2.91 -0.02 4.72 15 9 C 0.05 2.24 6.14 22.70 0.14 2.38 15 10 S 0.15 6.87 20.00 -56.49 -1.13 5.74 15 11 C -0.24 -11.20 6.43 23.10 0.15 -11.06 15 12 C -0.10 -4.25 10.04 22.57 0.23 -4.02 15 13 C 0.03 1.36 7.30 22.40 0.16 1.52 15 14 F -0.15 -5.47 17.26 44.97 0.78 -4.69 15 15 C -0.14 -5.43 9.94 21.98 0.22 -5.21 15 16 C -0.12 -5.51 9.48 22.53 0.21 -5.30 15 17 C 0.00 0.21 6.00 -20.17 -0.12 0.09 15 18 C -0.45 -22.48 5.90 -20.40 -0.12 -22.60 15 19 C 0.39 18.47 10.98 68.58 0.75 19.23 15 20 O -0.58 -30.30 15.43 -3.64 -0.06 -30.36 15 21 H 0.33 10.55 8.29 -92.71 -0.77 9.79 15 22 H 0.14 5.07 8.06 -2.91 -0.02 5.05 15 23 H 0.15 4.97 8.06 -2.91 -0.02 4.95 15 24 H 0.13 6.02 6.26 -2.91 -0.02 6.00 15 25 H 0.09 3.58 6.82 -2.91 -0.02 3.56 15 Total: -1.00 -54.92 244.85 5.40 -49.52 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.25 Total: 17.49 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 2.30 Total: -37.55 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.23 Total: -28.23 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.06 Total: -30.36 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.78 Total: -4.69 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: 2.03 Total: 28.08 kcal Atomic # 16 Polarization: 6.87 SS G_CDS: -1.13 Total: 5.74 kcal Total: -54.92 5.40 -49.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396298493.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.168 kcal (2) G-P(sol) polarization free energy of solvation -54.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds