Wall clock time and date at job start Mon Mar 30 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30702 * 1 3 3 Si 1.86799 * 119.99917 * 2 1 4 4 H 1.48496 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47330 * 299.99901 * 3 2 1 6 6 H 1.48501 * 109.46822 * 60.00100 * 3 2 1 7 7 C 1.40235 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99544 * 199.62888 * 7 2 1 9 9 C 1.40423 * 120.00003 * 19.63139 * 7 2 1 10 10 C 1.40190 * 120.49626 * 36.98413 * 9 7 2 11 11 F 1.35095 * 119.79608 * 0.04498 * 10 9 7 12 12 C 1.40964 * 120.41208 * 180.02562 * 10 9 7 13 13 C 1.45424 * 128.33436 * 180.02562 * 12 10 9 14 14 C 1.31980 * 114.95376 * 179.97438 * 13 12 10 15 15 S 1.75219 * 111.47818 * 359.97438 * 14 13 12 16 16 C 1.40298 * 119.92549 * 0.02562 * 12 10 9 17 17 C 1.39794 * 120.86916 * 0.05296 * 16 12 10 18 18 C 1.38979 * 120.79341 * 359.88704 * 17 16 12 19 19 C 1.46138 * 120.50503 * 180.02562 * 18 17 16 20 20 O 1.21402 * 120.00328 * 0.08105 * 19 18 17 21 21 H 0.96997 * 119.99960 * 0.02562 * 1 2 3 22 22 H 1.07998 * 122.52136 * 359.97438 * 13 12 10 23 23 H 1.08002 * 124.25821 * 180.27209 * 14 13 12 24 24 H 1.08002 * 119.60639 * 180.02562 * 17 16 12 25 25 H 1.08000 * 119.99797 * 180.08283 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8823 2.3965 -1.2125 6 1 1.8822 2.3964 1.2125 7 6 2.0081 -1.2145 -0.0005 8 1 3.0410 -1.2418 0.3136 9 6 1.3672 -2.3951 -0.4096 10 6 0.4426 -2.3742 -1.4632 11 9 0.1661 -1.2103 -2.0908 12 6 -0.2002 -3.5603 -1.8721 13 6 -1.1782 -3.7362 -2.9338 14 6 -1.6116 -4.9728 -3.0924 15 16 -0.8613 -6.0672 -1.9480 16 6 0.0847 -4.7706 -1.2222 17 6 1.0011 -4.8200 -0.1677 18 6 1.6547 -3.6710 0.2615 19 6 2.6119 -3.7301 1.3642 20 8 2.8426 -4.7887 1.9118 21 1 -0.4850 0.8400 -0.0004 22 1 -1.5239 -2.9168 -3.5465 23 1 -2.3338 -5.2731 -3.8371 24 1 1.2054 -5.7629 0.3179 25 1 3.1141 -2.8319 1.6919 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396298620.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:04 Heat of formation + Delta-G solvation = -59.401465 kcal Electronic energy + Delta-G solvation = -15449.121248 eV Core-core repulsion = 12625.743113 eV Total energy + Delta-G solvation = -2823.378135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.05235 -40.18827 -38.86521 -36.54287 -34.88195 -31.68605 -30.40694 -27.65053 -25.47582 -23.81483 -22.25606 -21.09674 -19.21152 -19.00803 -17.58665 -16.92144 -16.81464 -16.34028 -15.90719 -15.66649 -15.33004 -14.92572 -14.90255 -14.12844 -13.87686 -13.78849 -13.38363 -13.24231 -12.99542 -12.43588 -12.23246 -11.94601 -11.66739 -11.56029 -11.04998 -10.52129 -10.00143 -9.35516 -8.91361 -8.50615 -6.54289 -0.46331 0.61882 0.83387 0.98546 1.20243 1.41748 1.48825 1.58067 1.91669 2.15656 2.55522 3.24583 3.70186 3.81398 3.95600 4.16716 4.50362 4.56079 4.72328 4.88123 5.00699 5.08139 5.28940 5.39362 5.42448 5.59957 5.86359 6.22944 6.52869 6.62929 6.77082 8.10452 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.009369 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.582159 B = 2987.759438 C = 4061.285444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.244 1.244 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.114 0.886 9 C 0.100 3.900 10 C 0.009 3.991 11 F -0.147 7.147 12 C -0.066 4.066 13 C -0.147 4.147 14 C -0.162 4.162 15 S 0.058 5.942 16 C -0.252 4.252 17 C 0.000 4.000 18 C -0.273 4.273 19 C 0.405 3.595 20 O -0.530 6.530 21 H 0.298 0.702 22 H 0.147 0.853 23 H 0.202 0.798 24 H 0.122 0.878 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -1.099 -3.819 4.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.167 1.167 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.131 0.869 9 C 0.094 3.906 10 C -0.014 4.014 11 F -0.125 7.125 12 C -0.073 4.073 13 C -0.178 4.178 14 C -0.295 4.295 15 S 0.317 5.683 16 C -0.366 4.366 17 C -0.023 4.023 18 C -0.278 4.278 19 C 0.272 3.728 20 O -0.412 6.412 21 H 0.109 0.891 22 H 0.164 0.836 23 H 0.219 0.781 24 H 0.140 0.860 25 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.292 -3.006 -3.324 4.664 hybrid contribution -0.019 2.532 -0.461 2.574 sum -1.311 -0.473 -3.786 4.034 Atomic orbital electron populations 1.69745 1.09776 1.32161 1.29157 1.26908 0.95315 1.05016 0.91139 0.85068 0.80095 0.75448 0.78855 1.16678 1.19664 1.18638 1.19876 1.00098 0.91153 1.37498 0.86852 1.18580 0.90096 0.92991 0.88893 1.17837 1.06056 0.79513 0.98023 1.91275 1.92924 1.47393 1.80948 1.19528 0.97735 0.92678 0.97395 1.21076 0.98875 0.98673 0.99147 1.25333 1.04902 0.95505 1.03768 1.83370 1.42240 1.10026 1.32670 1.21934 1.10664 0.96601 1.07387 1.20544 0.91689 0.97698 0.92347 1.21466 1.08759 0.93525 1.04020 1.23662 0.78124 0.91855 0.79145 1.90419 1.60688 1.35735 1.54325 0.89108 0.83584 0.78064 0.86047 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.22 11.13 21.88 0.24 -37.98 15 2 C 0.04 1.70 4.50 85.35 0.38 2.09 15 3 Si 0.99 34.00 29.60 68.60 2.03 36.03 15 4 H -0.24 -7.91 7.11 99.48 0.71 -7.20 15 5 H -0.27 -9.47 7.11 99.48 0.71 -8.77 15 6 H -0.26 -8.60 7.11 99.48 0.71 -7.89 15 7 C -0.46 -21.44 8.10 23.29 0.19 -21.25 15 8 H 0.11 4.73 7.16 -2.92 -0.02 4.71 15 9 C 0.10 4.94 5.54 -19.97 -0.11 4.83 15 10 C 0.01 0.45 6.76 23.41 0.16 0.61 15 11 F -0.15 -7.57 14.16 44.97 0.64 -6.93 15 12 C -0.07 -3.03 6.02 -20.26 -0.12 -3.15 15 13 C -0.15 -5.50 10.29 23.23 0.24 -5.26 15 14 C -0.16 -4.97 11.02 66.93 0.74 -4.23 15 15 S 0.06 1.96 23.24 -56.49 -1.31 0.65 15 16 C -0.25 -10.97 6.45 23.15 0.15 -10.82 15 17 C 0.00 -0.02 9.60 22.82 0.22 0.20 15 18 C -0.27 -12.65 6.04 -18.75 -0.11 -12.76 15 19 C 0.41 16.89 11.03 69.87 0.77 17.66 15 20 O -0.53 -23.82 17.15 -3.41 -0.06 -23.88 15 21 H 0.30 13.09 8.29 -92.71 -0.77 12.32 15 22 H 0.15 5.01 8.06 -2.91 -0.02 4.99 15 23 H 0.20 4.26 8.06 -2.91 -0.02 4.23 15 24 H 0.12 5.13 7.61 -2.91 -0.02 5.11 15 25 H 0.12 4.38 6.90 -2.91 -0.02 4.36 15 Total: -1.00 -57.62 248.03 5.28 -52.34 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.24 Total: 11.86 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 2.50 Total: -32.08 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.24 Total: -37.98 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.64 Total: -6.93 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.03 Total: 36.03 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.31 Total: 0.65 kcal Total: -57.62 5.28 -52.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396298620.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.062 kcal (2) G-P(sol) polarization free energy of solvation -57.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds