Wall clock time and date at job start Mon Mar 30 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86794 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47034 * 275.28972 * 3 2 1 5 5 H 1.48498 * 109.47229 * 35.28483 * 3 2 1 6 6 H 1.48501 * 109.47485 * 155.28516 * 3 2 1 7 7 C 1.40455 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99994 * 30.05717 * 7 2 1 9 9 C 1.40336 * 119.99854 * 210.05415 * 7 2 1 10 10 C 1.41353 * 120.48234 * 34.60379 * 9 7 2 11 11 F 1.35100 * 119.90472 * 359.97438 * 10 9 7 12 12 C 1.36015 * 120.19242 * 179.97438 * 10 9 7 13 13 C 1.40118 * 121.98540 * 0.04132 * 12 10 9 14 14 S 1.76250 * 129.99253 * 179.97438 * 13 12 10 15 15 C 1.75448 * 91.59226 * 179.97438 * 14 13 12 16 16 C 1.32211 * 110.87389 * 359.97438 * 15 14 13 17 17 C 1.40214 * 120.87552 * 359.95525 * 13 12 10 18 18 C 1.42626 * 118.81119 * 0.02586 * 17 13 12 19 19 C 1.41512 * 120.45060 * 179.97438 * 18 17 13 20 20 O 1.21451 * 119.99412 * 359.97438 * 19 18 17 21 21 H 0.97000 * 119.99738 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.00195 * 179.97438 * 12 10 9 23 23 H 1.08004 * 124.56108 * 179.73593 * 15 14 13 24 24 H 1.07998 * 122.07653 * 180.02562 * 16 15 14 25 25 H 1.08000 * 120.00288 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 2.3753 2.1109 -1.3941 5 1 1.4974 2.6178 0.8087 6 1 3.5886 1.4105 0.5854 7 6 2.0078 -1.2164 0.0005 8 1 1.5767 -2.0890 -0.4675 9 6 3.2697 -1.2979 0.6093 10 6 3.5560 -0.5433 1.7698 11 9 2.6103 0.2634 2.2990 12 6 4.7808 -0.6272 2.3552 13 6 5.7936 -1.4488 1.8430 14 16 7.4367 -1.7163 2.4221 15 6 7.7650 -2.8434 1.1183 16 6 6.7074 -2.9810 0.3370 17 6 5.5790 -2.2248 0.6950 18 6 4.3071 -2.1644 0.0525 19 6 4.0530 -2.9325 -1.1086 20 8 4.9211 -3.6490 -1.5646 21 1 -0.4850 0.8401 0.0004 22 1 4.9790 -0.0419 3.2410 23 1 8.7059 -3.3531 0.9714 24 1 6.7110 -3.6339 -0.5233 25 1 3.0871 -2.8815 -1.5891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396299493.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:21 Heat of formation + Delta-G solvation = -52.662311 kcal Electronic energy + Delta-G solvation = -15610.171241 eV Core-core repulsion = 12787.085338 eV Total energy + Delta-G solvation = -2823.085903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.90197 -40.57313 -38.51521 -36.74415 -35.24215 -32.65696 -30.35597 -27.64355 -25.54610 -24.10381 -21.77416 -21.60585 -19.76664 -18.68703 -17.79804 -17.67671 -17.09663 -16.47041 -16.01739 -15.51739 -15.31546 -15.10848 -14.81958 -14.74076 -13.92914 -13.88125 -13.74100 -13.27906 -13.10347 -12.49443 -12.32110 -11.86632 -11.65968 -11.58058 -11.22520 -10.34614 -10.14969 -9.35921 -9.30300 -8.65422 -6.77753 -0.54562 0.18805 0.81506 1.16428 1.17453 1.29172 1.36336 1.56564 1.74660 2.00817 2.33479 3.16044 3.54925 3.86122 4.02882 4.15341 4.41794 4.56485 4.61719 4.85344 4.99457 5.15752 5.26274 5.30774 5.41989 5.65073 5.79079 5.95488 6.20665 6.36788 7.05407 7.66120 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.009751 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.092999 B = 2870.768053 C = 3589.653186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.065 3.935 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.254 1.254 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.102 0.898 9 C 0.090 3.910 10 C 0.002 3.998 11 F -0.144 7.144 12 C -0.050 4.050 13 C -0.262 4.262 14 S 0.091 5.909 15 C -0.169 4.169 16 C -0.155 4.155 17 C 0.020 3.980 18 C -0.323 4.323 19 C 0.386 3.614 20 O -0.549 6.549 21 H 0.312 0.688 22 H 0.141 0.859 23 H 0.198 0.802 24 H 0.146 0.854 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 2.198 3.328 7.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.164 4.164 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.178 1.178 6 H -0.181 1.181 7 C -0.440 4.440 8 H 0.120 0.880 9 C 0.085 3.915 10 C -0.020 4.020 11 F -0.123 7.123 12 C -0.072 4.072 13 C -0.376 4.376 14 S 0.353 5.647 15 C -0.303 4.303 16 C -0.186 4.186 17 C 0.011 3.989 18 C -0.329 4.329 19 C 0.259 3.741 20 O -0.436 6.436 21 H 0.125 0.875 22 H 0.158 0.842 23 H 0.215 0.785 24 H 0.164 0.836 25 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.870 2.483 4.332 9.321 hybrid contribution -1.421 0.200 -1.051 1.778 sum 6.449 2.683 3.282 7.717 Atomic orbital electron populations 1.69574 1.09432 1.33720 1.25040 1.27092 0.95316 1.04440 0.89513 0.85557 0.81071 0.76301 0.78796 1.19691 1.17827 1.18127 1.19729 0.97659 0.98440 1.28142 0.87980 1.18680 0.92048 0.90727 0.90039 1.17291 0.87537 1.00151 0.97002 1.91076 1.64368 1.71125 1.85695 1.19875 0.90160 0.97477 0.99669 1.22080 1.00204 1.10683 1.04639 1.83283 1.05036 1.45404 1.31005 1.25618 1.03308 1.03126 0.98247 1.20363 0.92405 1.02783 1.03048 1.18522 0.93866 0.93607 0.92892 1.20021 0.93076 1.15445 1.04344 1.22023 0.91276 0.77360 0.83458 1.90317 1.49574 1.38320 1.65356 0.87548 0.84157 0.78470 0.83625 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -34.30 13.91 21.91 0.30 -33.99 15 2 C 0.06 2.94 4.71 85.42 0.40 3.34 15 3 Si 0.96 38.17 25.31 68.60 1.74 39.90 15 4 H -0.27 -10.29 7.11 99.48 0.71 -9.59 15 5 H -0.25 -9.38 7.11 99.48 0.71 -8.67 15 6 H -0.26 -10.81 5.49 99.48 0.55 -10.27 15 7 C -0.42 -19.83 8.59 23.32 0.20 -19.63 15 8 H 0.10 4.95 7.14 -2.91 -0.02 4.93 15 9 C 0.09 4.26 5.03 -19.94 -0.10 4.16 15 10 C 0.00 0.07 4.99 22.52 0.11 0.18 15 11 F -0.14 -6.32 12.81 44.97 0.58 -5.74 15 12 C -0.05 -2.01 9.88 22.21 0.22 -1.80 15 13 C -0.26 -10.56 6.50 23.21 0.15 -10.41 15 14 S 0.09 2.84 23.29 -56.49 -1.32 1.52 15 15 C -0.17 -5.19 11.08 66.79 0.74 -4.45 15 16 C -0.16 -6.01 9.33 21.79 0.20 -5.81 15 17 C 0.02 0.88 5.85 -21.16 -0.12 0.75 15 18 C -0.32 -15.08 5.98 -19.31 -0.12 -15.19 15 19 C 0.39 17.38 10.82 68.63 0.74 18.13 15 20 O -0.55 -25.91 14.91 -3.56 -0.05 -25.96 15 21 H 0.31 12.41 8.29 -92.71 -0.77 11.64 15 22 H 0.14 4.80 8.06 -2.91 -0.02 4.77 15 23 H 0.20 4.33 8.06 -2.91 -0.02 4.31 15 24 H 0.15 5.87 6.04 -2.91 -0.02 5.85 15 25 H 0.09 3.80 6.71 -2.91 -0.02 3.78 15 Total: -1.00 -53.00 236.99 4.77 -48.23 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.09 Total: 6.76 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 2.43 Total: -30.72 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.30 Total: -33.99 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.58 Total: -5.74 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.74 Total: 39.90 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.32 Total: 1.52 kcal Total: -53.00 4.77 -48.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396299493.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.432 kcal (2) G-P(sol) polarization free energy of solvation -52.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds