Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48501 * 109.46871 * 275.41295 * 3 2 1 5 5 H 1.48498 * 109.47209 * 35.41479 * 3 2 1 6 6 H 1.48502 * 109.47191 * 155.41702 * 3 2 1 7 7 C 1.39890 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99897 * 341.73283 * 7 2 1 9 9 C 1.41228 * 120.00042 * 161.72488 * 7 2 1 10 10 C 1.40131 * 120.11686 * 150.10319 * 9 7 2 11 11 C 1.39971 * 119.99971 * 180.02562 * 10 9 7 12 12 C 1.46681 * 129.50029 * 179.97438 * 11 10 9 13 13 C 1.41567 * 123.19684 * 0.02562 * 12 11 10 14 14 O 1.21427 * 120.00373 * 180.02562 * 13 12 11 15 15 C 1.35353 * 113.60803 * 179.97438 * 12 11 10 16 16 S 1.69961 * 112.17470 * 359.97438 * 15 12 11 17 17 C 1.39784 * 119.39801 * 359.95242 * 11 10 9 18 18 C 1.40688 * 119.96640 * 0.02623 * 17 11 10 19 19 F 1.35097 * 119.59922 * 179.97438 * 18 17 11 20 20 C 1.35938 * 120.79303 * 0.02562 * 18 17 11 21 21 H 0.96999 * 119.99894 * 0.02562 * 1 2 3 22 22 H 1.08006 * 119.99982 * 0.02562 * 10 9 7 23 23 H 1.08004 * 119.99754 * 0.02562 * 13 12 11 24 24 H 1.08002 * 123.91796 * 180.02562 * 15 12 11 25 25 H 1.07995 * 119.95992 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3758 2.1124 -1.3939 5 1 1.5021 2.6170 0.8113 6 1 3.5929 1.4099 0.5824 7 6 2.0082 -1.2115 0.0005 8 1 1.5091 -2.1231 0.2941 9 6 3.3671 -1.2424 -0.3830 10 6 4.2307 -2.2004 0.1650 11 6 5.5771 -2.2285 -0.2165 12 6 6.6516 -3.1272 0.2188 13 6 6.4577 -4.1699 1.1565 14 8 7.3894 -4.8800 1.4762 15 6 7.8457 -2.8656 -0.3622 16 16 7.7603 -1.5567 -1.4430 17 6 6.0467 -1.2958 -1.1457 18 6 5.1678 -0.3402 -1.6877 19 9 5.6297 0.5582 -2.5848 20 6 3.8598 -0.3093 -1.3187 21 1 -0.4850 0.8400 -0.0004 22 1 3.8573 -2.9170 0.8816 23 1 5.4811 -4.3338 1.5876 24 1 8.7482 -3.4244 -0.1628 25 1 3.1971 0.4304 -1.7430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396300322.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = -63.602957 kcal Electronic energy + Delta-G solvation = -15163.292605 eV Core-core repulsion = 12339.732280 eV Total energy + Delta-G solvation = -2823.560325 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.94176 -40.73681 -39.43333 -36.59940 -34.92906 -31.94702 -30.55910 -27.91499 -26.56975 -23.93032 -22.72673 -20.87371 -19.84504 -18.82619 -17.67404 -17.30219 -17.09404 -16.70732 -16.51258 -16.24188 -15.58802 -15.37876 -15.05472 -14.38863 -14.01159 -13.90048 -13.63402 -13.35153 -12.87171 -12.73544 -12.37974 -11.88015 -11.77645 -11.75747 -11.13321 -10.76963 -10.31288 -9.57623 -9.04703 -8.71311 -6.61264 -0.54844 0.28043 0.55295 0.56383 0.99165 1.22139 1.33376 1.42120 1.92222 2.03864 2.43430 3.20874 3.30282 3.66175 3.75114 4.04323 4.21727 4.49798 4.52118 4.71827 4.90512 4.94831 5.11163 5.32041 5.47583 5.64319 5.94422 6.15976 6.45861 6.51513 6.63360 8.01420 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026006 B = 0.008468 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.404318 B = 3305.857736 C = 4175.831014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.059 3.941 3 Si 0.946 3.054 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.105 3.895 10 C -0.213 4.213 11 C 0.021 3.979 12 C -0.235 4.235 13 C 0.411 3.589 14 O -0.510 6.510 15 C -0.129 4.129 16 S 0.214 5.786 17 C -0.331 4.331 18 C 0.164 3.836 19 F -0.149 7.149 20 C -0.252 4.252 21 H 0.300 0.700 22 H 0.131 0.869 23 H 0.125 0.875 24 H 0.196 0.804 25 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.536 -0.020 -1.015 9.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.161 4.161 3 Si 0.769 3.231 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.101 3.899 10 C -0.235 4.235 11 C 0.015 3.985 12 C -0.252 4.252 13 C 0.273 3.727 14 O -0.390 6.390 15 C -0.267 4.267 16 S 0.481 5.519 17 C -0.445 4.445 18 C 0.142 3.858 19 F -0.128 7.128 20 C -0.273 4.273 21 H 0.111 0.889 22 H 0.149 0.851 23 H 0.141 0.859 24 H 0.213 0.787 25 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.814 0.461 -1.807 10.973 hybrid contribution -1.363 0.263 0.583 1.506 sum 9.451 0.724 -1.224 9.557 Atomic orbital electron populations 1.69695 1.08959 1.32146 1.33600 1.26719 0.95230 1.03805 0.90308 0.85767 0.80112 0.77474 0.79722 1.18558 1.19279 1.17697 1.19505 0.93435 0.96351 1.38914 0.90096 1.17385 0.92970 0.90573 0.88954 1.20872 0.90325 1.05793 1.06483 1.18702 0.93801 0.92380 0.93588 1.19865 0.93134 1.04161 1.08073 1.22341 0.93681 0.78900 0.77731 1.90502 1.46937 1.44800 1.56784 1.25918 1.02218 1.00564 0.97970 1.82319 1.01328 1.26721 1.41573 1.22401 0.99838 1.08223 1.14043 1.16511 0.91631 0.87935 0.89741 1.91410 1.89490 1.66093 1.65795 1.20853 0.94022 1.06793 1.05632 0.88863 0.85077 0.85919 0.78700 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.29 13.93 21.82 0.30 -39.98 15 2 C 0.06 2.81 5.40 85.24 0.46 3.27 15 3 Si 0.95 38.86 24.51 68.60 1.68 40.54 15 4 H -0.26 -10.36 6.70 99.48 0.67 -9.70 15 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 15 6 H -0.25 -10.78 6.87 99.48 0.68 -10.09 15 7 C -0.45 -22.43 9.55 23.41 0.22 -22.21 15 8 H 0.08 4.20 8.06 -2.91 -0.02 4.17 15 9 C 0.11 4.85 5.09 -21.40 -0.11 4.74 15 10 C -0.21 -8.72 9.59 23.15 0.22 -8.50 15 11 C 0.02 0.78 6.02 -20.28 -0.12 0.66 15 12 C -0.23 -7.56 5.82 -20.92 -0.12 -7.68 15 13 C 0.41 12.20 11.19 68.64 0.77 12.97 15 14 O -0.51 -17.15 17.36 -3.49 -0.06 -17.21 15 15 C -0.13 -3.63 10.31 67.15 0.69 -2.94 15 16 S 0.21 6.23 22.97 -56.49 -1.30 4.93 15 17 C -0.33 -12.73 6.46 23.24 0.15 -12.58 15 18 C 0.16 6.90 7.27 22.33 0.16 7.06 15 19 F -0.15 -5.90 17.25 44.97 0.78 -5.13 15 20 C -0.25 -11.30 7.04 22.42 0.16 -11.14 15 21 H 0.30 13.20 8.30 -92.71 -0.77 12.43 15 22 H 0.13 4.82 7.58 -2.91 -0.02 4.79 15 23 H 0.12 3.03 7.55 -2.91 -0.02 3.00 15 24 H 0.20 4.48 7.90 -2.91 -0.02 4.46 15 25 H 0.12 5.31 4.73 -2.91 -0.01 5.30 15 Total: -1.00 -53.40 244.54 5.07 -48.33 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.18 Total: 4.87 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 2.48 Total: -36.34 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.30 Total: -39.98 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.06 Total: -17.21 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.78 Total: -5.13 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.68 Total: 40.54 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.30 Total: 4.93 kcal Total: -53.40 5.07 -48.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396300322.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.277 kcal (2) G-P(sol) polarization free energy of solvation -53.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds