Wall clock time and date at job start Mon Mar 30 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30609 * 1 3 3 Si 1.86802 * 120.00025 * 2 1 4 4 H 1.48500 * 109.46864 * 90.00113 * 3 2 1 5 5 H 1.48502 * 109.46802 * 209.99644 * 3 2 1 6 6 H 1.48500 * 109.46952 * 329.99880 * 3 2 1 7 7 C 1.40426 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00369 * 20.37755 * 7 2 1 9 9 C 1.39651 * 119.99798 * 200.38379 * 7 2 1 10 10 C 1.37399 * 124.88538 * 193.48506 * 9 7 2 11 11 C 1.38888 * 115.08365 * 179.97438 * 10 9 7 12 12 C 1.40505 * 113.09075 * 359.97438 * 11 10 9 13 13 C 1.39400 * 119.89169 * 180.02562 * 12 11 10 14 14 C 1.38049 * 121.39332 * 359.97438 * 13 12 11 15 15 F 1.35104 * 119.47065 * 180.02562 * 14 13 12 16 16 C 1.38492 * 121.06700 * 0.03921 * 14 13 12 17 17 C 1.39125 * 120.21179 * 359.96019 * 16 14 13 18 18 C 1.46441 * 120.33499 * 180.02562 * 17 16 14 19 19 O 1.21370 * 119.99524 * 359.97438 * 18 17 16 20 20 S 1.75482 * 124.88635 * 13.17822 * 9 7 2 21 21 H 0.97008 * 120.00026 * 174.70570 * 1 2 3 22 22 H 1.07996 * 122.45883 * 0.02562 * 10 9 7 23 23 H 1.08006 * 119.30163 * 179.97438 * 13 12 11 24 24 H 1.07994 * 119.89348 * 179.97438 * 16 14 13 25 25 H 1.07994 * 120.00476 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.4876 2.0464 1.4001 5 1 3.5377 1.4401 -0.7000 6 1 1.4375 2.6526 -0.7001 7 6 2.0082 -1.2162 -0.0005 8 1 1.5190 -2.1220 -0.3266 9 6 3.3391 -1.2542 0.4207 10 6 4.1970 -2.3085 0.2200 11 6 5.4787 -2.1289 0.7242 12 6 5.6545 -0.8841 1.3517 13 6 6.8895 -0.5550 1.9083 14 6 7.9564 -1.4297 1.8593 15 9 9.1359 -1.0709 2.4118 16 6 7.8373 -2.6690 1.2526 17 6 6.6297 -3.0545 0.6792 18 6 6.5006 -4.3645 0.0375 19 8 7.4501 -5.1198 0.0036 20 16 4.1586 0.0407 1.2757 21 1 -0.4850 -0.8365 -0.0775 22 1 3.8971 -3.2103 -0.2928 23 1 7.0142 0.4046 2.3880 24 1 8.6843 -3.3382 1.2247 25 1 5.5606 -4.6586 -0.4055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396300349.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:19 Heat of formation + Delta-G solvation = -77.859873 kcal Electronic energy + Delta-G solvation = -14942.814364 eV Core-core repulsion = 12118.635812 eV Total energy + Delta-G solvation = -2824.178552 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.66454 -40.46372 -39.00107 -36.92808 -35.04534 -32.14396 -31.15558 -27.36144 -25.63610 -23.90541 -22.09215 -21.08735 -20.86997 -18.87847 -17.56979 -17.46675 -16.71759 -16.45215 -16.21342 -15.98153 -15.50927 -15.22617 -15.14123 -14.86027 -14.19872 -14.05910 -13.52945 -13.15642 -12.93699 -12.55189 -12.44221 -12.10939 -11.65440 -11.41450 -10.96193 -10.64997 -10.47449 -9.87265 -9.40825 -8.60343 -6.76589 -0.57181 0.09012 0.59446 1.06422 1.20260 1.40061 1.46801 1.69386 1.80415 2.03762 2.57725 2.94476 3.31897 3.66031 3.87758 3.92997 4.33939 4.47044 4.61424 4.86932 4.99589 5.04068 5.19317 5.22166 5.25703 5.52681 5.73034 5.90722 6.05751 6.19915 6.53884 7.50003 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.007787 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.833759 B = 3594.860099 C = 4445.122370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.024 3.976 3 Si 0.983 3.017 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.417 4.417 8 H 0.097 0.903 9 C 0.046 3.954 10 C -0.370 4.370 11 C 0.058 3.942 12 C -0.237 4.237 13 C -0.037 4.037 14 C -0.018 4.018 15 F -0.152 7.152 16 C -0.048 4.048 17 C -0.239 4.239 18 C 0.401 3.599 19 O -0.516 6.516 20 S 0.002 5.998 21 H 0.301 0.699 22 H 0.130 0.870 23 H 0.144 0.856 24 H 0.140 0.860 25 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 2.483 0.570 4.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.143 1.143 5 H -0.141 1.141 6 H -0.144 1.144 7 C -0.450 4.450 8 H 0.115 0.885 9 C -0.073 4.073 10 C -0.393 4.393 11 C 0.051 3.949 12 C -0.349 4.349 13 C -0.060 4.060 14 C -0.038 4.038 15 F -0.131 7.131 16 C -0.069 4.069 17 C -0.242 4.242 18 C 0.266 3.734 19 O -0.396 6.396 20 S 0.259 5.741 21 H 0.114 0.886 22 H 0.148 0.852 23 H 0.161 0.839 24 H 0.157 0.843 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.950 5.022 1.087 5.925 hybrid contribution 0.300 -3.123 -0.369 3.159 sum 3.250 1.899 0.719 3.832 Atomic orbital electron populations 1.70477 1.08404 1.34744 1.24357 1.28435 0.95774 1.06155 0.89898 0.84220 0.78679 0.73320 0.83917 1.14342 1.14138 1.14354 1.20684 0.94670 0.98289 1.31356 0.88508 1.21547 0.96040 0.94544 0.95130 1.19666 0.92716 1.04099 1.22774 1.19098 0.92833 0.91313 0.91691 1.22333 0.99020 0.99822 1.13736 1.20406 0.89584 0.99223 0.96802 1.16799 0.82454 0.96373 1.08220 1.91408 1.44890 1.92310 1.84491 1.21109 0.97693 0.94304 0.93790 1.21253 0.93182 0.98428 1.11308 1.23799 0.91995 0.83384 0.74208 1.90463 1.43815 1.53430 1.51854 1.83940 1.04594 1.21636 1.63938 0.88635 0.85227 0.83860 0.84267 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -32.47 13.64 21.91 0.30 -32.17 15 2 C 0.02 1.00 5.50 85.41 0.47 1.47 15 3 Si 0.98 34.62 24.76 68.60 1.70 36.32 15 4 H -0.22 -7.28 6.84 99.48 0.68 -6.60 15 5 H -0.22 -7.64 6.54 99.48 0.65 -6.99 15 6 H -0.22 -7.12 7.11 99.48 0.71 -6.41 15 7 C -0.42 -18.25 9.61 23.14 0.22 -18.02 15 8 H 0.10 4.28 8.06 -2.92 -0.02 4.26 15 9 C 0.05 1.98 5.72 22.41 0.13 2.11 15 10 C -0.37 -15.53 9.77 22.23 0.22 -15.31 15 11 C 0.06 2.39 6.01 -20.05 -0.12 2.27 15 12 C -0.24 -9.56 6.47 23.10 0.15 -9.41 15 13 C -0.04 -1.34 9.96 22.50 0.22 -1.11 15 14 C -0.02 -0.64 7.25 22.29 0.16 -0.48 15 15 F -0.15 -5.28 17.24 44.97 0.78 -4.51 15 16 C -0.05 -1.78 9.54 22.54 0.21 -1.56 15 17 C -0.24 -9.06 6.08 -18.40 -0.11 -9.17 15 18 C 0.40 13.84 11.28 69.96 0.79 14.63 15 19 O -0.52 -19.97 17.15 -3.31 -0.06 -20.02 15 20 S 0.00 0.10 16.94 -56.49 -0.96 -0.86 15 21 H 0.30 12.32 8.73 -92.70 -0.81 11.51 15 22 H 0.13 5.03 7.42 -2.91 -0.02 5.01 15 23 H 0.14 4.46 8.06 -2.91 -0.02 4.44 15 24 H 0.14 4.82 7.62 -2.91 -0.02 4.79 15 25 H 0.13 3.56 7.33 -2.91 -0.02 3.54 15 Total: -1.00 -47.51 244.64 5.22 -42.28 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.12 Total: 13.54 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 2.35 Total: -34.58 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.30 Total: -32.17 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 34.62 SS G_CDS: 1.70 Total: 36.32 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -0.96 Total: -0.86 kcal Total: -47.51 5.22 -42.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396300349.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.575 kcal (2) G-P(sol) polarization free energy of solvation -47.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds