Wall clock time and date at job start Mon Mar 30 2020 06:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30546 * 1 3 3 Si 1.86804 * 120.00367 * 2 1 4 4 H 1.48493 * 109.47032 * 275.65552 * 3 2 1 5 5 H 1.48502 * 109.46747 * 35.65640 * 3 2 1 6 6 H 1.48504 * 109.46831 * 155.65618 * 3 2 1 7 7 C 1.40488 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99906 * 335.37243 * 7 2 1 9 9 C 1.39702 * 120.00160 * 155.37188 * 7 2 1 10 10 C 1.47933 * 120.72948 * 315.82815 * 9 7 2 11 11 C 1.39745 * 128.89855 * 0.02562 * 10 9 7 12 12 C 1.33290 * 115.73413 * 179.97438 * 11 10 9 13 13 F 1.35107 * 124.67936 * 179.97438 * 12 11 10 14 14 S 1.75476 * 110.64515 * 0.02562 * 12 11 10 15 15 C 1.40027 * 118.28613 * 179.97438 * 10 9 7 16 16 C 1.39769 * 120.69135 * 0.02562 * 15 10 9 17 17 C 1.37354 * 122.52383 * 0.02562 * 16 15 10 18 18 C 1.39784 * 120.91126 * 359.97438 * 17 16 15 19 19 C 1.46220 * 120.47561 * 179.97438 * 18 17 16 20 20 O 1.21394 * 119.99919 * 5.23621 * 19 18 17 21 21 H 0.97001 * 119.99690 * 359.97438 * 1 2 3 22 22 H 1.07999 * 122.13654 * 0.27055 * 11 10 9 23 23 H 1.08005 * 118.73878 * 179.97438 * 16 15 10 24 24 H 1.08001 * 119.54778 * 180.02562 * 17 16 15 25 25 H 1.07998 * 119.99909 * 185.23147 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 2.3676 2.1153 -1.3932 5 1 1.5019 2.6152 0.8162 6 1 3.5918 1.4084 0.5772 7 6 2.0079 -1.2167 -0.0005 8 1 1.5415 -2.1096 0.3888 9 6 3.3096 -1.2716 -0.5047 10 6 3.6582 -0.5941 -1.7728 11 6 2.8387 0.1539 -2.6222 12 6 3.4312 0.6521 -3.7073 13 9 2.8114 1.3991 -4.6471 14 16 5.1270 0.2028 -3.7476 15 6 4.9786 -0.6818 -2.2307 16 6 5.9394 -1.3925 -1.5058 17 6 5.6495 -2.0336 -0.3262 18 6 4.3589 -2.0020 0.2099 19 6 4.0607 -2.6884 1.4661 20 8 4.9550 -3.2103 2.0997 21 1 -0.4850 0.8401 0.0004 22 1 1.7930 0.3219 -2.4106 23 1 6.9483 -1.4400 -1.8884 24 1 6.4295 -2.5688 0.1948 25 1 3.0449 -2.7309 1.8303 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396300834.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:18 Heat of formation + Delta-G solvation = -54.225382 kcal Electronic energy + Delta-G solvation = -15426.505855 eV Core-core repulsion = 12603.352172 eV Total energy + Delta-G solvation = -2823.153683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.91900 -40.33651 -39.09185 -35.98916 -35.58547 -32.67057 -30.05825 -27.36439 -25.67403 -23.70698 -22.74097 -20.78254 -20.21168 -18.54020 -17.91485 -17.41449 -16.85557 -16.63301 -16.46397 -16.39029 -15.12374 -14.88420 -14.72380 -14.59414 -14.35826 -14.14660 -13.72490 -13.26190 -13.13432 -12.53448 -12.14213 -11.96691 -11.75838 -11.51537 -11.35201 -10.41078 -10.16142 -9.31522 -9.26378 -8.76302 -6.73699 -0.41728 0.08192 0.20171 0.76209 1.09502 1.21988 1.33708 1.37358 1.79802 1.98576 2.34480 3.16572 3.31845 3.88501 4.13220 4.21986 4.37447 4.51695 4.68045 4.82885 4.96379 5.04262 5.13695 5.41997 5.50252 5.74525 5.86632 5.98189 6.25952 6.46526 6.89790 7.73918 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.012765 C = 0.008292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.016842 B = 2192.914276 C = 3376.086194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.077 3.923 3 Si 0.915 3.085 4 H -0.245 1.245 5 H -0.256 1.256 6 H -0.257 1.257 7 C -0.428 4.428 8 H 0.107 0.893 9 C 0.156 3.844 10 C -0.189 4.189 11 C -0.106 4.106 12 C -0.081 4.081 13 F -0.114 7.114 14 S 0.126 5.874 15 C -0.065 4.065 16 C -0.225 4.225 17 C 0.016 3.984 18 C -0.334 4.334 19 C 0.399 3.601 20 O -0.541 6.541 21 H 0.309 0.691 22 H 0.136 0.864 23 H 0.134 0.866 24 H 0.130 0.870 25 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 3.115 -3.935 6.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.149 4.149 3 Si 0.735 3.265 4 H -0.169 1.169 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.453 4.453 8 H 0.124 0.876 9 C 0.150 3.850 10 C -0.195 4.195 11 C -0.137 4.137 12 C -0.214 4.214 13 F -0.093 7.093 14 S 0.387 5.613 15 C -0.181 4.181 16 C -0.250 4.250 17 C -0.005 4.005 18 C -0.339 4.339 19 C 0.268 3.732 20 O -0.424 6.424 21 H 0.121 0.879 22 H 0.154 0.846 23 H 0.152 0.848 24 H 0.148 0.852 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.952 3.338 -4.732 7.620 hybrid contribution -1.577 0.571 0.633 1.793 sum 3.375 3.909 -4.100 6.594 Atomic orbital electron populations 1.69576 1.08996 1.33171 1.27494 1.26705 0.94916 1.03208 0.90102 0.86232 0.80781 0.78328 0.81128 1.16901 1.18021 1.18039 1.19577 0.95667 0.97517 1.32542 0.87551 1.19592 0.91391 0.87073 0.86956 1.18884 0.92786 1.09816 0.98051 1.19972 1.01719 0.98411 0.93594 1.21354 0.96878 1.08585 0.94552 1.91411 1.81288 1.74239 1.62390 1.83571 1.03493 1.53129 1.21114 1.22809 0.97083 1.00838 0.97370 1.19737 0.98443 1.08009 0.98784 1.20967 0.95142 0.91840 0.92561 1.21435 0.93998 1.17143 1.01291 1.23503 0.93523 0.73107 0.83040 1.90402 1.52140 1.41714 1.58119 0.87897 0.84621 0.84833 0.85181 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -33.73 13.91 21.92 0.30 -33.42 15 2 C 0.08 3.35 4.29 85.43 0.37 3.72 15 3 Si 0.91 36.20 24.66 68.60 1.69 37.89 15 4 H -0.24 -9.68 5.85 99.48 0.58 -9.10 15 5 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 7 C -0.43 -19.25 8.42 23.17 0.20 -19.06 15 8 H 0.11 4.85 7.55 -2.91 -0.02 4.83 15 9 C 0.16 6.90 4.91 -18.21 -0.09 6.81 15 10 C -0.19 -8.14 4.76 -19.91 -0.09 -8.23 15 11 C -0.11 -4.42 6.63 21.52 0.14 -4.28 15 12 C -0.08 -3.13 8.29 66.70 0.55 -2.58 15 13 F -0.11 -4.24 17.32 44.97 0.78 -3.46 15 14 S 0.13 4.25 23.30 -56.49 -1.32 2.93 15 15 C -0.06 -2.53 6.48 23.07 0.15 -2.38 15 16 C -0.23 -8.24 9.93 22.43 0.22 -8.02 15 17 C 0.02 0.64 9.53 22.44 0.21 0.85 15 18 C -0.33 -14.12 6.05 -18.68 -0.11 -14.23 15 19 C 0.40 16.18 11.04 69.90 0.77 16.95 15 20 O -0.54 -23.73 17.17 -3.38 -0.06 -23.79 15 21 H 0.31 12.03 8.29 -92.71 -0.77 11.27 15 22 H 0.14 5.81 5.99 -2.91 -0.02 5.80 15 23 H 0.13 4.05 8.06 -2.91 -0.02 4.03 15 24 H 0.13 4.63 7.63 -2.91 -0.02 4.60 15 25 H 0.11 3.85 7.04 -2.91 -0.02 3.83 15 Total: -1.00 -48.64 241.31 4.84 -43.80 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.12 Total: 6.50 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 2.32 Total: -30.45 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.30 Total: -33.42 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.06 Total: -23.79 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 1.69 Total: 37.89 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.32 Total: 2.93 kcal Total: -48.64 4.84 -43.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396300834.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.426 kcal (2) G-P(sol) polarization free energy of solvation -48.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds