Wall clock time and date at job start Mon Mar 30 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30561 * 1 3 3 Si 1.86804 * 120.00009 * 2 1 4 4 H 1.48499 * 109.46763 * 270.00188 * 3 2 1 5 5 H 1.48495 * 109.46994 * 29.99956 * 3 2 1 6 6 H 1.48497 * 109.47041 * 150.00422 * 3 2 1 7 7 C 1.40417 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00120 * 163.40661 * 7 2 1 9 9 C 1.40099 * 119.99838 * 343.40829 * 7 2 1 10 10 C 1.40750 * 120.24142 * 333.60574 * 9 7 2 11 11 C 1.35858 * 120.54594 * 179.97438 * 10 9 7 12 12 C 1.40097 * 121.04803 * 0.23024 * 11 10 9 13 13 C 1.46525 * 119.50554 * 179.70544 * 12 11 10 14 14 O 1.21364 * 119.99965 * 179.82967 * 13 12 11 15 15 C 1.41240 * 120.98852 * 359.53958 * 12 11 10 16 16 S 1.76009 * 130.74718 * 180.15340 * 15 12 11 17 17 C 1.75519 * 91.51929 * 180.27957 * 16 15 12 18 18 C 1.32951 * 110.63902 * 359.97438 * 17 16 15 19 19 F 1.35105 * 122.11802 * 180.02562 * 18 17 16 20 20 C 1.39695 * 119.85356 * 0.45459 * 15 12 11 21 21 H 0.97002 * 120.00495 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.72891 * 359.96393 * 10 9 7 23 23 H 1.07991 * 119.47716 * 180.02562 * 11 10 9 24 24 H 1.08000 * 119.99855 * 359.83356 * 13 12 11 25 25 H 1.08000 * 124.68383 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2396 1.6178 0.0000 4 1 2.4870 2.0464 -1.4001 5 1 1.4371 2.6527 0.7000 6 1 3.5372 1.4402 0.6999 7 6 2.0077 -1.2160 -0.0005 8 1 3.0540 -1.2354 -0.2676 9 6 1.3510 -2.4042 0.3454 10 6 0.2287 -2.3726 1.1942 11 6 -0.4132 -3.5210 1.5333 12 6 0.0249 -4.7623 1.0537 13 6 -0.6888 -5.9803 1.4461 14 8 -0.3188 -7.0600 1.0334 15 6 1.1422 -4.8568 0.1948 16 16 1.9017 -6.2579 -0.5522 17 6 3.1066 -5.2475 -1.3320 18 6 2.9135 -3.9679 -1.0271 19 9 3.7108 -2.9874 -1.5049 20 6 1.8316 -3.7008 -0.1792 21 1 -0.4851 0.8400 0.0004 22 1 -0.1250 -1.4277 1.5794 23 1 -1.2728 -3.4767 2.1855 24 1 -1.5440 -5.9172 2.1026 25 1 3.8954 -5.6144 -1.9719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396301547.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:07 Heat of formation + Delta-G solvation = -50.854637 kcal Electronic energy + Delta-G solvation = -15361.591892 eV Core-core repulsion = 12538.584375 eV Total energy + Delta-G solvation = -2823.007517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.95395 -38.50416 -37.20085 -34.78830 -33.46306 -30.38377 -28.34758 -26.39536 -23.32890 -22.32600 -20.28964 -19.64219 -18.29291 -16.37190 -15.91793 -15.56167 -15.13984 -14.80778 -14.76922 -14.08804 -13.62749 -13.27694 -13.15395 -12.58040 -12.30166 -11.90504 -11.60466 -11.53797 -11.43315 -11.05702 -10.65329 -10.11472 -10.09871 -9.87735 -9.64946 -8.66155 -8.31864 -7.67937 -7.45126 -6.91456 -4.94811 1.66964 1.92087 2.51497 2.69184 2.74060 2.81139 2.97265 3.18364 3.45534 3.50752 4.18430 5.13300 5.22951 5.51782 5.74718 5.91713 6.17447 6.33922 6.45654 6.56122 6.66244 6.89335 6.99369 7.39100 7.48175 7.51622 7.58695 7.97277 8.13126 8.32775 8.50748 9.37226 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.008863 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.777947 B = 3158.380019 C = 4118.371156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.067 3.933 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.383 4.383 8 H 0.103 0.897 9 C 0.167 3.833 10 C -0.198 4.198 11 C -0.012 4.012 12 C -0.320 4.320 13 C 0.373 3.627 14 O -0.514 6.514 15 C -0.007 4.007 16 S 0.126 5.874 17 C -0.357 4.357 18 C 0.157 3.843 19 F -0.137 7.137 20 C -0.238 4.238 21 H 0.298 0.702 22 H 0.126 0.874 23 H 0.105 0.895 24 H 0.076 0.924 25 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 1.297 1.299 1.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.160 4.160 3 Si 0.747 3.253 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.407 4.407 8 H 0.121 0.879 9 C 0.161 3.839 10 C -0.219 4.219 11 C -0.033 4.033 12 C -0.329 4.329 13 C 0.240 3.760 14 O -0.396 6.396 15 C -0.124 4.124 16 S 0.389 5.611 17 C -0.491 4.491 18 C 0.126 3.874 19 F -0.116 7.116 20 C -0.245 4.245 21 H 0.110 0.890 22 H 0.144 0.856 23 H 0.123 0.877 24 H 0.092 0.908 25 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.364 -0.605 0.992 1.218 hybrid contribution 0.635 2.581 -0.208 2.666 sum 0.998 1.976 0.784 2.349 Atomic orbital electron populations 1.69694 1.08316 1.31577 1.25700 1.26418 0.95055 1.02853 0.91716 0.85980 0.80804 0.78241 0.80309 1.18415 1.19146 1.17432 1.20266 0.98864 0.90781 1.30818 0.87936 1.18512 0.89860 0.89023 0.86508 1.20682 1.00165 0.97612 1.03470 1.20387 0.96235 0.91480 0.95235 1.19056 1.04041 0.95303 1.14511 1.23389 0.85580 0.87226 0.79755 1.90401 1.66300 1.31430 1.51478 1.22262 0.97434 0.94735 0.97953 1.84124 1.23223 1.07244 1.46554 1.24823 1.11079 0.96394 1.16796 1.16197 0.90382 0.84274 0.96567 1.91394 1.71976 1.61728 1.86511 1.18836 1.01768 0.94874 1.09050 0.89018 0.85649 0.87683 0.90830 0.82683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -15.76 10.98 55.57 0.61 -15.15 15 2 C 0.07 1.41 5.14 -17.27 -0.09 1.32 15 3 Si 0.93 15.68 29.59 -169.99 -5.03 10.65 15 4 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 5 H -0.27 -4.32 7.11 56.52 0.40 -3.92 15 6 H -0.25 -4.28 7.11 56.52 0.40 -3.88 15 7 C -0.38 -8.99 8.56 -38.06 -0.33 -9.32 15 8 H 0.10 2.38 6.45 -52.49 -0.34 2.04 15 9 C 0.17 4.11 5.74 -104.29 -0.60 3.51 15 10 C -0.20 -4.54 8.56 -39.49 -0.34 -4.88 15 11 C -0.01 -0.26 9.62 -39.74 -0.38 -0.64 15 12 C -0.32 -7.10 5.90 -104.72 -0.62 -7.72 15 13 C 0.37 7.45 11.39 34.07 0.39 7.83 15 14 O -0.51 -11.56 15.73 5.48 0.09 -11.47 15 15 C -0.01 -0.16 6.33 -37.90 -0.24 -0.40 15 16 S 0.13 2.72 21.37 -107.50 -2.30 0.42 15 17 C -0.36 -7.51 11.11 28.90 0.32 -7.18 15 18 C 0.16 3.65 7.27 -40.74 -0.30 3.35 15 19 F -0.14 -3.12 15.38 2.25 0.03 -3.09 15 20 C -0.24 -5.88 6.02 -104.73 -0.63 -6.51 15 21 H 0.30 5.60 8.29 -40.82 -0.34 5.27 15 22 H 0.13 2.81 6.21 -52.49 -0.33 2.48 15 23 H 0.11 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.08 1.17 8.06 -52.49 -0.42 0.75 15 25 H 0.16 2.81 8.06 -52.49 -0.42 2.38 15 LS Contribution 245.15 15.07 3.69 3.69 Total: -1.00 -26.32 245.15 -6.78 -33.10 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -1.07 Total: 2.49 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -2.81 Total: -20.63 kcal Atomic # 7 Polarization: -15.76 SS G_CDS: 0.61 Total: -15.15 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.03 Total: -3.09 kcal Atomic # 14 Polarization: 15.68 SS G_CDS: -5.03 Total: 10.65 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.30 Total: 0.42 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -26.32 -6.78 -33.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396301547.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.758 kcal (2) G-P(sol) polarization free energy of solvation -26.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds