Wall clock time and date at job start Mon Mar 30 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30561 * 1 3 3 Si 1.86804 * 120.00009 * 2 1 4 4 H 1.48499 * 109.46763 * 270.00188 * 3 2 1 5 5 H 1.48495 * 109.46994 * 29.99956 * 3 2 1 6 6 H 1.48497 * 109.47041 * 150.00422 * 3 2 1 7 7 C 1.40417 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00120 * 163.40661 * 7 2 1 9 9 C 1.40099 * 119.99838 * 343.40829 * 7 2 1 10 10 C 1.40750 * 120.24142 * 333.60574 * 9 7 2 11 11 C 1.35858 * 120.54594 * 179.97438 * 10 9 7 12 12 C 1.40097 * 121.04803 * 0.23024 * 11 10 9 13 13 C 1.46525 * 119.50554 * 179.70544 * 12 11 10 14 14 O 1.21364 * 119.99965 * 179.82967 * 13 12 11 15 15 C 1.41240 * 120.98852 * 359.53958 * 12 11 10 16 16 S 1.76009 * 130.74718 * 180.15340 * 15 12 11 17 17 C 1.75519 * 91.51929 * 180.27957 * 16 15 12 18 18 C 1.32951 * 110.63902 * 359.97438 * 17 16 15 19 19 F 1.35105 * 122.11802 * 180.02562 * 18 17 16 20 20 C 1.39695 * 119.85356 * 0.45459 * 15 12 11 21 21 H 0.97002 * 120.00495 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.72891 * 359.96393 * 10 9 7 23 23 H 1.07991 * 119.47716 * 180.02562 * 11 10 9 24 24 H 1.08000 * 119.99855 * 359.83356 * 13 12 11 25 25 H 1.08000 * 124.68383 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2396 1.6178 0.0000 4 1 2.4870 2.0464 -1.4001 5 1 1.4371 2.6527 0.7000 6 1 3.5372 1.4402 0.6999 7 6 2.0077 -1.2160 -0.0005 8 1 3.0540 -1.2354 -0.2676 9 6 1.3510 -2.4042 0.3454 10 6 0.2287 -2.3726 1.1942 11 6 -0.4132 -3.5210 1.5333 12 6 0.0249 -4.7623 1.0537 13 6 -0.6888 -5.9803 1.4461 14 8 -0.3188 -7.0600 1.0334 15 6 1.1422 -4.8568 0.1948 16 16 1.9017 -6.2579 -0.5522 17 6 3.1066 -5.2475 -1.3320 18 6 2.9135 -3.9679 -1.0271 19 9 3.7108 -2.9874 -1.5049 20 6 1.8316 -3.7008 -0.1792 21 1 -0.4851 0.8400 0.0004 22 1 -0.1250 -1.4277 1.5794 23 1 -1.2728 -3.4767 2.1855 24 1 -1.5440 -5.9172 2.1026 25 1 3.8954 -5.6144 -1.9719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396301547.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:06 Heat of formation + Delta-G solvation = -64.174033 kcal Electronic energy + Delta-G solvation = -15362.169464 eV Core-core repulsion = 12538.584375 eV Total energy + Delta-G solvation = -2823.585089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.72613 -40.17841 -38.88065 -36.45540 -35.14234 -32.07733 -30.05587 -28.08308 -25.01364 -24.00164 -21.94844 -21.37260 -19.97392 -18.06204 -17.55264 -17.29143 -16.72282 -16.55445 -16.45013 -15.72196 -15.21065 -14.95563 -14.79638 -14.26264 -13.91875 -13.62599 -13.28432 -13.11498 -12.94410 -12.63330 -12.14395 -11.78669 -11.75226 -11.56487 -11.25985 -10.28832 -10.05955 -9.37011 -9.07019 -8.63573 -6.67791 -0.01329 0.21129 0.80829 1.23100 1.30052 1.35292 1.45522 1.50573 1.89154 2.07026 2.55326 3.40421 3.63070 3.92051 4.08832 4.32218 4.49368 4.73570 4.84177 4.87832 4.95962 5.19553 5.31915 5.67739 5.73976 5.82794 5.88539 6.28158 6.41152 6.62724 6.92831 7.83136 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.008863 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.777947 B = 3158.380019 C = 4118.371156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.036 3.964 3 Si 0.993 3.007 4 H -0.259 1.259 5 H -0.249 1.249 6 H -0.256 1.256 7 C -0.410 4.410 8 H 0.093 0.907 9 C 0.137 3.863 10 C -0.218 4.218 11 C -0.004 4.004 12 C -0.337 4.337 13 C 0.380 3.620 14 O -0.539 6.539 15 C -0.039 4.039 16 S 0.145 5.855 17 C -0.341 4.341 18 C 0.128 3.872 19 F -0.141 7.141 20 C -0.269 4.269 21 H 0.311 0.689 22 H 0.125 0.875 23 H 0.148 0.852 24 H 0.133 0.867 25 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.147 1.554 1.854 2.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.189 4.189 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.172 1.172 6 H -0.179 1.179 7 C -0.434 4.434 8 H 0.111 0.889 9 C 0.131 3.869 10 C -0.239 4.239 11 C -0.024 4.024 12 C -0.346 4.346 13 C 0.249 3.751 14 O -0.423 6.423 15 C -0.156 4.156 16 S 0.408 5.592 17 C -0.475 4.475 18 C 0.097 3.903 19 F -0.120 7.120 20 C -0.276 4.276 21 H 0.124 0.876 22 H 0.143 0.857 23 H 0.165 0.835 24 H 0.149 0.851 25 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.355 -0.365 1.551 1.633 hybrid contribution 0.808 2.402 -0.385 2.564 sum 0.453 2.037 1.166 2.391 Atomic orbital electron populations 1.69668 1.09337 1.33260 1.25244 1.27156 0.95752 1.05119 0.90850 0.85013 0.79344 0.74329 0.80256 1.18304 1.17182 1.17932 1.20431 0.98762 0.91998 1.32191 0.88902 1.18912 0.91020 0.89512 0.87422 1.20774 1.00582 0.98460 1.04067 1.20770 0.96697 0.90288 0.94661 1.19600 1.03850 0.96987 1.14125 1.23977 0.86145 0.85599 0.79396 1.90395 1.67196 1.32187 1.52495 1.22706 0.98479 0.95358 0.99009 1.83939 1.22855 1.06353 1.46090 1.25179 1.11041 0.95543 1.15756 1.16423 0.91008 0.85079 0.97801 1.91369 1.72001 1.61996 1.86622 1.19188 1.02762 0.95590 1.10040 0.87642 0.85700 0.83470 0.85095 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -32.31 10.98 21.91 0.24 -32.07 15 2 C 0.04 1.53 5.14 85.41 0.44 1.97 15 3 Si 0.99 31.63 29.59 68.60 2.03 33.66 15 4 H -0.26 -8.14 7.11 99.48 0.71 -7.44 15 5 H -0.25 -7.12 7.11 99.48 0.71 -6.41 15 6 H -0.26 -8.25 7.11 99.48 0.71 -7.55 15 7 C -0.41 -19.79 8.56 23.25 0.20 -19.59 15 8 H 0.09 4.50 6.45 -2.91 -0.02 4.48 15 9 C 0.14 6.92 5.74 -19.65 -0.11 6.81 15 10 C -0.22 -10.00 8.56 22.33 0.19 -9.81 15 11 C 0.00 -0.14 9.62 22.17 0.21 0.07 15 12 C -0.34 -14.49 5.90 -19.93 -0.12 -14.60 15 13 C 0.38 14.10 11.39 69.98 0.80 14.90 15 14 O -0.54 -23.16 15.73 -3.29 -0.05 -23.22 15 15 C -0.04 -1.84 6.33 23.36 0.15 -1.69 15 16 S 0.15 6.14 21.37 -56.49 -1.21 4.94 15 17 C -0.34 -14.16 11.11 66.65 0.74 -13.42 15 18 C 0.13 6.04 7.27 21.53 0.16 6.20 15 19 F -0.14 -6.58 15.38 44.97 0.69 -5.89 15 20 C -0.27 -13.56 6.02 -19.93 -0.12 -13.68 15 21 H 0.31 11.43 8.29 -92.71 -0.77 10.66 15 22 H 0.13 5.61 6.21 -2.91 -0.02 5.59 15 23 H 0.15 4.52 8.06 -2.92 -0.02 4.50 15 24 H 0.13 3.47 8.06 -2.91 -0.02 3.45 15 25 H 0.19 6.35 8.06 -2.91 -0.02 6.33 15 Total: -1.00 -57.30 245.15 5.48 -51.81 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.24 Total: 13.61 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 2.53 Total: -42.85 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.24 Total: -32.07 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.69 Total: -5.89 kcal Atomic # 14 Polarization: 31.63 SS G_CDS: 2.03 Total: 33.66 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.21 Total: 4.94 kcal Total: -57.30 5.48 -51.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396301547.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.360 kcal (2) G-P(sol) polarization free energy of solvation -57.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds