Wall clock time and date at job start Mon Mar 30 2020 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31153 * 1 3 3 Si 1.86799 * 119.99714 * 2 1 4 4 H 1.48506 * 109.47152 * 275.05213 * 3 2 1 5 5 H 1.48500 * 109.47339 * 35.05435 * 3 2 1 6 6 H 1.48498 * 109.47046 * 155.05617 * 3 2 1 7 7 C 1.39639 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00497 * 353.34344 * 7 2 1 9 9 C 1.40884 * 119.99655 * 173.62785 * 7 2 1 10 10 C 1.37174 * 123.32593 * 314.80151 * 9 7 2 11 11 F 1.35107 * 124.09747 * 0.02562 * 10 9 7 12 12 S 1.69993 * 111.80971 * 179.85262 * 10 9 7 13 13 C 1.75814 * 93.22321 * 0.35361 * 12 10 9 14 14 C 1.39698 * 130.07533 * 179.81978 * 13 12 10 15 15 C 1.37977 * 120.81468 * 179.97438 * 14 13 12 16 16 C 1.38041 * 120.44328 * 0.02562 * 15 14 13 17 17 C 1.39345 * 120.04217 * 359.97438 * 16 15 14 18 18 C 1.46690 * 120.05482 * 180.02562 * 17 16 15 19 19 O 1.21330 * 119.99572 * 354.65922 * 18 17 16 20 20 C 1.39294 * 110.22637 * 359.80294 * 13 12 10 21 21 H 0.97000 * 120.00235 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.59213 * 359.97438 * 14 13 12 23 23 H 1.08000 * 119.77724 * 180.02562 * 15 14 13 24 24 H 1.08000 * 119.98188 * 179.97438 * 16 15 14 25 25 H 1.07995 * 120.00283 * 174.66529 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 14 2.2454 1.6178 0.0000 4 1 2.3861 2.1081 -1.3947 5 1 1.5004 2.6195 0.8041 6 1 3.5923 1.4118 0.5904 7 6 2.0097 -1.2093 -0.0005 8 1 1.4752 -2.1416 0.1075 9 6 3.4120 -1.2130 -0.1360 10 6 4.0818 -0.4533 -1.0611 11 9 3.4781 0.3774 -1.9391 12 16 5.7638 -0.6802 -0.9661 13 6 5.6328 -1.8423 0.3467 14 6 6.6294 -2.5424 1.0310 15 6 6.3071 -3.4201 2.0455 16 6 4.9891 -3.6227 2.4027 17 6 3.9732 -2.9386 1.7382 18 6 2.5726 -3.1532 2.1179 19 8 2.2903 -3.9967 2.9430 20 6 4.2964 -2.0312 0.6911 21 1 -0.4850 0.8400 0.0004 22 1 7.6650 -2.3947 0.7625 23 1 7.0911 -3.9523 2.5637 24 1 4.7452 -4.3118 3.1977 25 1 1.7929 -2.5605 1.6630 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396301606.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:43 Heat of formation + Delta-G solvation = -51.006234 kcal Electronic energy + Delta-G solvation = -15589.659371 eV Core-core repulsion = 12766.645280 eV Total energy + Delta-G solvation = -2823.014091 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.74742 -40.94730 -39.21679 -36.70036 -34.63050 -32.29130 -30.46098 -28.21771 -25.34364 -24.24032 -22.18771 -21.59507 -19.79006 -19.03031 -17.48223 -17.40683 -17.11916 -16.82337 -16.40337 -15.70778 -15.49864 -15.39866 -15.00513 -14.74566 -14.20941 -14.11935 -13.61046 -13.18678 -12.76405 -12.49137 -12.23914 -11.91542 -11.63363 -11.52802 -11.19278 -10.63889 -10.37488 -9.32417 -8.94979 -8.68894 -6.63286 -0.61804 0.01151 0.54562 1.01878 1.13098 1.27033 1.36946 1.42037 1.51341 2.06170 2.64932 2.92570 3.42491 3.59769 3.95903 4.14021 4.33819 4.50776 4.62279 4.68776 4.90516 4.99731 5.16647 5.28668 5.38379 5.46505 5.85116 5.97487 6.27624 6.43377 6.62907 8.11377 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.012521 C = 0.008444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.781438 B = 2235.684886 C = 3314.995347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.057 3.943 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.458 4.458 8 H 0.089 0.911 9 C 0.035 3.965 10 C -0.232 4.232 11 F -0.124 7.124 12 S 0.126 5.874 13 C -0.158 4.158 14 C -0.044 4.044 15 C -0.109 4.109 16 C -0.061 4.061 17 C -0.166 4.166 18 C 0.376 3.624 19 O -0.501 6.501 20 C -0.038 4.038 21 H 0.293 0.707 22 H 0.168 0.832 23 H 0.182 0.818 24 H 0.148 0.852 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.281 -2.599 2.742 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.159 4.159 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.107 0.893 9 C 0.023 3.977 10 C -0.366 4.366 11 F -0.104 7.104 12 S 0.387 5.613 13 C -0.273 4.273 14 C -0.067 4.067 15 C -0.129 4.129 16 C -0.081 4.081 17 C -0.169 4.169 18 C 0.239 3.761 19 O -0.378 6.378 20 C -0.047 4.047 21 H 0.104 0.896 22 H 0.185 0.815 23 H 0.199 0.801 24 H 0.166 0.834 25 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.954 -2.230 2.261 14.311 hybrid contribution -1.952 0.674 0.078 2.066 sum 12.003 -1.557 2.339 12.327 Atomic orbital electron populations 1.69745 1.08240 1.31169 1.37997 1.26457 0.95440 1.03127 0.90837 0.85633 0.79624 0.78170 0.78131 1.20059 1.21540 1.17957 1.18860 0.89518 0.95184 1.45533 0.89321 1.17962 0.94717 0.93563 0.91482 1.21327 0.97075 1.15016 1.03166 1.91036 1.82520 1.69370 1.67437 1.81789 0.99583 1.43650 1.36300 1.22719 0.96857 1.04633 1.03115 1.21167 0.98696 0.93338 0.93494 1.21403 0.96285 0.98240 0.96968 1.21580 0.92582 0.96137 0.97834 1.20657 0.96810 1.00448 0.98943 1.24945 0.92524 0.80792 0.77866 1.90396 1.86466 1.31765 1.29176 1.19297 0.92430 0.97069 0.95938 0.89622 0.81497 0.80113 0.83394 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.75 13.94 21.79 0.30 -45.44 15 2 C 0.06 3.01 5.42 85.13 0.46 3.47 15 3 Si 0.96 45.41 24.16 68.60 1.66 47.07 15 4 H -0.27 -13.22 6.35 99.48 0.63 -12.59 15 5 H -0.29 -12.87 7.11 99.48 0.71 -12.17 15 6 H -0.26 -12.11 6.59 99.48 0.66 -11.46 15 7 C -0.46 -24.12 7.70 23.26 0.18 -23.94 15 8 H 0.09 4.81 6.33 -2.91 -0.02 4.80 15 9 C 0.04 1.70 4.83 -20.83 -0.10 1.60 15 10 C -0.23 -10.90 5.96 67.57 0.40 -10.50 15 11 F -0.12 -6.21 12.81 44.97 0.58 -5.63 15 12 S 0.13 4.59 22.96 -56.49 -1.30 3.29 15 13 C -0.16 -5.45 6.43 22.88 0.15 -5.31 15 14 C -0.04 -1.07 10.05 22.56 0.23 -0.84 15 15 C -0.11 -2.34 10.00 22.16 0.22 -2.12 15 16 C -0.06 -1.74 9.57 22.49 0.22 -1.52 15 17 C -0.17 -6.23 5.91 -19.80 -0.12 -6.35 15 18 C 0.38 15.45 10.89 70.03 0.76 16.21 15 19 O -0.50 -21.23 17.15 -3.18 -0.05 -21.28 15 20 C -0.04 -1.57 6.02 -19.97 -0.12 -1.69 15 21 H 0.29 14.59 8.30 -92.71 -0.77 13.82 15 22 H 0.17 2.70 8.06 -2.91 -0.02 2.68 15 23 H 0.18 2.15 8.06 -2.91 -0.02 2.12 15 24 H 0.15 3.77 7.63 -2.91 -0.02 3.75 15 25 H 0.12 5.41 4.46 -2.91 -0.01 5.40 15 Total: -1.00 -61.22 236.67 4.59 -56.64 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: 1.12 Total: -3.64 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 2.28 Total: -30.99 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.30 Total: -45.44 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.05 Total: -21.28 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.58 Total: -5.63 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.66 Total: 47.07 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.30 Total: 3.29 kcal Total: -61.22 4.59 -56.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396301606.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.629 kcal (2) G-P(sol) polarization free energy of solvation -61.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds