Wall clock time and date at job start Mon Mar 30 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48503 * 109.47070 * 274.68562 * 3 2 1 5 5 H 1.48503 * 109.46827 * 34.68458 * 3 2 1 6 6 H 1.48501 * 109.47453 * 154.68413 * 3 2 1 7 7 C 1.39860 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99522 * 198.02327 * 7 2 1 9 9 C 1.41248 * 120.00200 * 18.03246 * 7 2 1 10 10 C 1.41249 * 120.06122 * 204.88049 * 9 7 2 11 11 C 1.35566 * 120.17516 * 180.02562 * 10 9 7 12 12 C 1.40677 * 120.91513 * 0.02584 * 11 10 9 13 13 S 1.75974 * 129.93177 * 180.30166 * 12 11 10 14 14 C 1.75225 * 92.47033 * 180.02562 * 13 12 11 15 15 C 1.41299 * 124.44274 * 179.90522 * 14 13 12 16 16 O 1.21439 * 120.00265 * 179.69842 * 15 14 13 17 17 C 1.35387 * 111.11608 * 359.64610 * 14 13 12 18 18 F 1.35098 * 122.87520 * 180.24189 * 17 14 13 19 19 C 1.40345 * 120.01643 * 359.97418 * 12 11 10 20 20 C 1.39805 * 120.05820 * 24.90131 * 9 7 2 21 21 H 0.97002 * 119.99817 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.91275 * 0.03881 * 10 9 7 23 23 H 1.07996 * 119.53889 * 180.02562 * 11 10 9 24 24 H 1.07995 * 119.99869 * 359.71052 * 15 14 13 25 25 H 1.07996 * 120.00902 * 0.02562 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3915 2.1035 -1.3954 5 1 1.4935 2.6220 0.7968 6 1 3.5866 1.4136 0.5987 7 6 2.0082 -1.2112 0.0005 8 1 3.0485 -1.2340 0.2900 9 6 1.3540 -2.4046 -0.3776 10 6 1.8253 -3.6499 0.0940 11 6 1.1995 -4.7967 -0.2678 12 6 0.0764 -4.7710 -1.1147 13 16 -0.9105 -6.0951 -1.7223 14 6 -1.9531 -5.0077 -2.6173 15 6 -3.0517 -5.4208 -3.4041 16 8 -3.7251 -4.5956 -3.9875 17 6 -1.5714 -3.7194 -2.4515 18 9 -2.2148 -2.6834 -3.0327 19 6 -0.4115 -3.5466 -1.5968 20 6 0.2391 -2.3554 -1.2197 21 1 -0.4850 0.8401 -0.0004 22 1 2.6863 -3.6884 0.7448 23 1 1.5682 -5.7431 0.0991 24 1 -3.2926 -6.4703 -3.4864 25 1 -0.1225 -1.4045 -1.5821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396302364.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:04 Heat of formation + Delta-G solvation = -49.215705 kcal Electronic energy + Delta-G solvation = -15109.200310 eV Core-core repulsion = 12286.263862 eV Total energy + Delta-G solvation = -2822.936447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.43147 -38.82187 -38.05609 -34.69013 -33.22411 -29.88591 -29.45557 -25.89711 -24.62927 -21.92112 -20.99321 -19.55612 -17.91236 -17.12497 -16.13413 -15.84494 -15.41755 -15.32985 -14.92382 -14.12265 -13.73571 -13.62184 -13.32249 -12.89992 -12.36311 -12.24748 -11.79800 -11.33885 -11.26937 -11.01029 -10.57631 -10.18157 -10.10219 -9.83533 -9.63054 -9.36679 -8.53072 -7.85498 -7.05138 -6.94418 -4.62191 0.70930 2.08955 2.32601 2.58393 2.62319 2.93362 2.97286 2.98776 3.23798 3.74216 4.24350 4.43907 4.81873 5.23116 5.34503 5.67073 5.95261 6.16187 6.28312 6.55851 6.70265 6.88649 7.06112 7.18020 7.32774 7.60562 7.65209 7.78328 8.21327 8.51185 8.53068 9.90098 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.030318 B = 0.007215 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.333001 B = 3880.015039 C = 4721.621057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.449 4.449 8 H 0.087 0.913 9 C 0.101 3.899 10 C -0.156 4.156 11 C -0.069 4.069 12 C -0.207 4.207 13 S 0.081 5.919 14 C -0.352 4.352 15 C 0.407 3.593 16 O -0.469 6.469 17 C 0.210 3.790 18 F -0.105 7.105 19 C -0.095 4.095 20 C -0.122 4.122 21 H 0.287 0.713 22 H 0.111 0.889 23 H 0.105 0.895 24 H 0.100 0.900 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 -6.015 -1.032 6.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.478 4.478 8 H 0.105 0.895 9 C 0.097 3.903 10 C -0.177 4.177 11 C -0.092 4.092 12 C -0.322 4.322 13 S 0.342 5.658 14 C -0.469 4.469 15 C 0.268 3.732 16 O -0.346 6.346 17 C 0.173 3.827 18 F -0.083 7.083 19 C -0.101 4.101 20 C -0.145 4.145 21 H 0.099 0.901 22 H 0.129 0.871 23 H 0.123 0.877 24 H 0.116 0.884 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.053 -6.955 -1.196 7.058 hybrid contribution 0.187 2.375 -0.111 2.385 sum 0.135 -4.581 -1.307 4.765 Atomic orbital electron populations 1.69807 1.07746 1.30143 1.32802 1.26005 0.94822 1.01863 0.92059 0.86184 0.80503 0.80029 0.79483 1.19037 1.20012 1.18298 1.19623 0.98472 0.90914 1.38802 0.89520 1.17422 0.91200 0.92440 0.89201 1.20928 1.01900 0.92385 1.02525 1.19718 0.94093 0.97817 0.97548 1.21763 1.04754 0.93801 1.11839 1.83096 1.25386 1.07670 1.49657 1.23410 1.10051 0.97039 1.16358 1.21573 0.80448 0.94669 0.76481 1.90600 1.47563 1.57632 1.38781 1.18683 0.90032 0.83049 0.90913 1.91514 1.79364 1.56652 1.80802 1.18861 0.95328 0.95543 1.00335 1.21303 0.98674 0.94681 0.99838 0.90146 0.87088 0.87725 0.88394 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.11 10.98 55.54 0.61 -18.50 15 2 C 0.07 1.68 5.12 -17.34 -0.09 1.60 15 3 Si 0.91 17.33 29.60 -169.99 -5.03 12.30 15 4 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 5 H -0.28 -5.15 7.11 56.52 0.40 -4.75 15 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 7 C -0.45 -10.76 9.03 -37.83 -0.34 -11.10 15 8 H 0.09 1.95 7.91 -52.48 -0.41 1.53 15 9 C 0.10 2.45 5.56 -107.02 -0.59 1.86 15 10 C -0.16 -3.33 9.70 -39.39 -0.38 -3.71 15 11 C -0.07 -1.38 9.98 -39.62 -0.40 -1.77 15 12 C -0.21 -4.32 6.50 -37.87 -0.25 -4.57 15 13 S 0.08 1.40 23.14 -107.50 -2.49 -1.09 15 14 C -0.35 -6.66 6.13 -39.44 -0.24 -6.91 15 15 C 0.41 6.81 11.43 31.89 0.36 7.17 15 16 O -0.47 -9.46 16.61 5.42 0.09 -9.37 15 17 C 0.21 4.61 7.61 -37.87 -0.29 4.32 15 18 F -0.11 -2.42 16.11 2.25 0.04 -2.38 15 19 C -0.10 -2.21 6.02 -105.38 -0.63 -2.84 15 20 C -0.12 -3.03 8.76 -38.00 -0.33 -3.37 15 21 H 0.29 6.42 8.30 -40.82 -0.34 6.08 15 22 H 0.11 2.10 8.06 -52.49 -0.42 1.68 15 23 H 0.10 1.75 8.06 -52.49 -0.42 1.32 15 24 H 0.10 1.18 8.06 -52.49 -0.42 0.76 15 25 H 0.13 3.40 6.15 -52.49 -0.32 3.08 15 LS Contribution 250.11 15.07 3.77 3.77 Total: -1.00 -26.60 250.11 -7.33 -33.93 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -1.14 Total: 0.67 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -3.18 Total: -19.33 kcal Atomic # 7 Polarization: -19.11 SS G_CDS: 0.61 Total: -18.50 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.49 Total: -1.09 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.60 -7.33 -33.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302364.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.283 kcal (2) G-P(sol) polarization free energy of solvation -26.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds