Wall clock time and date at job start Mon Mar 30 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48503 * 109.47070 * 274.68562 * 3 2 1 5 5 H 1.48503 * 109.46827 * 34.68458 * 3 2 1 6 6 H 1.48501 * 109.47453 * 154.68413 * 3 2 1 7 7 C 1.39860 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99522 * 198.02327 * 7 2 1 9 9 C 1.41248 * 120.00200 * 18.03246 * 7 2 1 10 10 C 1.41249 * 120.06122 * 204.88049 * 9 7 2 11 11 C 1.35566 * 120.17516 * 180.02562 * 10 9 7 12 12 C 1.40677 * 120.91513 * 0.02584 * 11 10 9 13 13 S 1.75974 * 129.93177 * 180.30166 * 12 11 10 14 14 C 1.75225 * 92.47033 * 180.02562 * 13 12 11 15 15 C 1.41299 * 124.44274 * 179.90522 * 14 13 12 16 16 O 1.21439 * 120.00265 * 179.69842 * 15 14 13 17 17 C 1.35387 * 111.11608 * 359.64610 * 14 13 12 18 18 F 1.35098 * 122.87520 * 180.24189 * 17 14 13 19 19 C 1.40345 * 120.01643 * 359.97418 * 12 11 10 20 20 C 1.39805 * 120.05820 * 24.90131 * 9 7 2 21 21 H 0.97002 * 119.99817 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.91275 * 0.03881 * 10 9 7 23 23 H 1.07996 * 119.53889 * 180.02562 * 11 10 9 24 24 H 1.07995 * 119.99869 * 359.71052 * 15 14 13 25 25 H 1.07996 * 120.00902 * 0.02562 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3915 2.1035 -1.3954 5 1 1.4935 2.6220 0.7968 6 1 3.5866 1.4136 0.5987 7 6 2.0082 -1.2112 0.0005 8 1 3.0485 -1.2340 0.2900 9 6 1.3540 -2.4046 -0.3776 10 6 1.8253 -3.6499 0.0940 11 6 1.1995 -4.7967 -0.2678 12 6 0.0764 -4.7710 -1.1147 13 16 -0.9105 -6.0951 -1.7223 14 6 -1.9531 -5.0077 -2.6173 15 6 -3.0517 -5.4208 -3.4041 16 8 -3.7251 -4.5956 -3.9875 17 6 -1.5714 -3.7194 -2.4515 18 9 -2.2148 -2.6834 -3.0327 19 6 -0.4115 -3.5466 -1.5968 20 6 0.2391 -2.3554 -1.2197 21 1 -0.4850 0.8401 -0.0004 22 1 2.6863 -3.6884 0.7448 23 1 1.5682 -5.7431 0.0991 24 1 -3.2926 -6.4703 -3.4864 25 1 -0.1225 -1.4045 -1.5821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396302364.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:04 Heat of formation + Delta-G solvation = -63.337478 kcal Electronic energy + Delta-G solvation = -15109.812676 eV Core-core repulsion = 12286.263862 eV Total energy + Delta-G solvation = -2823.548813 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.07985 -40.32737 -39.68736 -36.36545 -34.88129 -31.58919 -31.07265 -27.62016 -26.20436 -23.57729 -22.59535 -21.15761 -19.52930 -18.74780 -17.73140 -17.40204 -17.04758 -16.98591 -16.52589 -15.65726 -15.29647 -15.26343 -14.95074 -14.51651 -14.03159 -13.84746 -13.44526 -12.98499 -12.86692 -12.57400 -12.12214 -11.81022 -11.74174 -11.47777 -11.06915 -11.05642 -10.19016 -9.52379 -8.76142 -8.47430 -6.41170 -0.87557 0.58062 0.64771 0.98130 0.99885 1.37069 1.44146 1.51613 1.74268 2.15310 2.54010 2.96973 3.42441 3.47922 3.87586 4.09534 4.47555 4.59486 4.73214 4.87160 5.03290 5.15549 5.35234 5.51733 5.59086 5.89732 6.04377 6.30761 6.46137 6.75681 6.80300 8.21423 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.030318 B = 0.007215 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.333001 B = 3880.015039 C = 4721.621057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.482 4.482 8 H 0.095 0.905 9 C 0.077 3.923 10 C -0.158 4.158 11 C -0.066 4.066 12 C -0.225 4.225 13 S 0.198 5.802 14 C -0.343 4.343 15 C 0.412 3.588 16 O -0.502 6.502 17 C 0.150 3.850 18 F -0.126 7.126 19 C -0.109 4.109 20 C -0.169 4.169 21 H 0.289 0.711 22 H 0.134 0.866 23 H 0.148 0.852 24 H 0.169 0.831 25 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -9.074 -0.799 9.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.511 4.511 8 H 0.113 0.887 9 C 0.073 3.927 10 C -0.179 4.179 11 C -0.088 4.088 12 C -0.340 4.340 13 S 0.462 5.538 14 C -0.459 4.459 15 C 0.275 3.725 16 O -0.380 6.380 17 C 0.112 3.888 18 F -0.104 7.104 19 C -0.114 4.114 20 C -0.192 4.192 21 H 0.100 0.900 22 H 0.152 0.848 23 H 0.166 0.834 24 H 0.185 0.815 25 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.405 -10.065 -0.950 10.118 hybrid contribution -0.035 3.000 -0.226 3.009 sum 0.370 -7.065 -1.177 7.172 Atomic orbital electron populations 1.69908 1.09404 1.30927 1.34537 1.26868 0.95353 1.05079 0.91115 0.85149 0.79523 0.75681 0.79217 1.19246 1.19569 1.17023 1.19933 0.99001 0.91832 1.40309 0.88748 1.17771 0.91460 0.94019 0.89430 1.21246 1.02430 0.91887 1.02367 1.20161 0.93153 0.99077 0.96378 1.22395 1.05292 0.95267 1.11049 1.82620 1.21617 1.03345 1.46262 1.24189 1.10289 0.96489 1.14974 1.22537 0.78607 0.96868 0.74492 1.90608 1.48310 1.59329 1.39723 1.18901 0.91685 0.84118 0.94046 1.91446 1.79808 1.57693 1.81474 1.19094 0.95756 0.96043 1.00555 1.21088 1.00939 0.94462 1.02689 0.90008 0.84815 0.83403 0.81544 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.01 10.98 21.81 0.24 -42.77 15 2 C 0.03 1.54 5.12 85.22 0.44 1.98 15 3 Si 0.98 36.76 29.60 68.60 2.03 38.79 15 4 H -0.27 -9.95 7.11 99.48 0.71 -9.25 15 5 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 6 H -0.25 -8.64 7.11 99.48 0.71 -7.93 15 7 C -0.48 -24.05 9.03 23.40 0.21 -23.83 15 8 H 0.09 4.35 7.91 -2.91 -0.02 4.32 15 9 C 0.08 3.87 5.56 -21.42 -0.12 3.75 15 10 C -0.16 -6.64 9.70 22.39 0.22 -6.43 15 11 C -0.07 -2.44 9.98 22.25 0.22 -2.22 15 12 C -0.22 -8.97 6.50 23.38 0.15 -8.82 15 13 S 0.20 5.88 23.14 -56.49 -1.31 4.57 15 14 C -0.34 -12.12 6.13 22.36 0.14 -11.98 15 15 C 0.41 12.33 11.43 68.57 0.78 13.11 15 16 O -0.50 -19.46 16.61 -3.52 -0.06 -19.52 15 17 C 0.15 6.71 7.61 23.38 0.18 6.89 15 18 F -0.13 -6.13 16.11 44.97 0.72 -5.41 15 19 C -0.11 -5.17 6.02 -20.36 -0.12 -5.29 15 20 C -0.17 -8.93 8.76 23.29 0.20 -8.72 15 21 H 0.29 13.87 8.30 -92.71 -0.77 13.10 15 22 H 0.13 4.86 8.06 -2.91 -0.02 4.84 15 23 H 0.15 4.19 8.06 -2.91 -0.02 4.16 15 24 H 0.17 2.87 8.06 -2.91 -0.02 2.85 15 25 H 0.10 5.68 6.15 -2.91 -0.02 5.66 15 Total: -1.00 -62.42 250.11 5.17 -57.26 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.24 Total: 8.65 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 2.30 Total: -41.57 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.24 Total: -42.77 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.06 Total: -19.52 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.72 Total: -5.41 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.31 Total: 4.57 kcal Total: -62.42 5.17 -57.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302364.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.082 kcal (2) G-P(sol) polarization free energy of solvation -62.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds