Wall clock time and date at job start Mon Mar 30 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86800 * 119.99485 * 2 1 4 4 H 1.48498 * 109.47347 * 85.18596 * 3 2 1 5 5 H 1.48507 * 109.47009 * 205.18197 * 3 2 1 6 6 H 1.48496 * 109.47155 * 325.17953 * 3 2 1 7 7 C 1.40209 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99927 * 196.49459 * 7 2 1 9 9 C 1.40267 * 120.00243 * 16.49053 * 7 2 1 10 10 C 1.40345 * 120.56962 * 26.11702 * 9 7 2 11 11 C 1.38833 * 120.50339 * 179.97438 * 10 9 7 12 12 S 1.76242 * 129.69849 * 180.02562 * 11 10 9 13 13 C 1.75412 * 91.63560 * 179.97438 * 12 11 10 14 14 F 1.35094 * 124.56491 * 180.02562 * 13 12 11 15 15 C 1.32903 * 110.87941 * 359.97438 * 13 12 11 16 16 C 1.40626 * 115.82475 * 0.02562 * 15 13 12 17 17 C 1.41334 * 127.90159 * 179.97438 * 16 15 13 18 18 C 1.38477 * 120.70224 * 179.64707 * 17 16 15 19 19 C 1.46307 * 120.39834 * 180.34242 * 18 17 16 20 20 O 1.21382 * 120.00000 * 0.28319 * 19 18 17 21 21 H 0.96995 * 120.00611 * 0.02562 * 1 2 3 22 22 H 1.07993 * 119.75310 * 359.97438 * 10 9 7 23 23 H 1.08005 * 122.08960 * 179.97438 * 15 13 12 24 24 H 1.08006 * 119.64549 * 0.02562 * 17 16 15 25 25 H 1.08000 * 119.99899 * 180.28168 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3865 2.1053 1.3951 5 1 3.5856 1.4131 -0.5958 6 1 1.4928 2.6211 -0.7994 7 6 2.0080 -1.2142 -0.0005 8 1 3.0547 -1.2335 0.2650 9 6 1.3501 -2.4039 -0.3459 10 6 0.2257 -2.3799 -1.1854 11 6 -0.4242 -3.5583 -1.5267 12 16 -1.8378 -3.8089 -2.5490 13 6 -1.7767 -5.5434 -2.2947 14 9 -2.6435 -6.4281 -2.8341 15 6 -0.7623 -5.8702 -1.5007 16 6 0.0264 -4.8000 -1.0423 17 6 1.1560 -4.8546 -0.1947 18 6 1.8308 -3.6984 0.1595 19 6 3.0039 -3.7634 1.0313 20 8 3.3942 -4.8359 1.4447 21 1 -0.4851 0.8399 -0.0004 22 1 -0.1369 -1.4377 -1.5688 23 1 -0.5568 -6.8939 -1.2241 24 1 1.5002 -5.8089 0.1759 25 1 3.5226 -2.8571 1.3071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396302396.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:57 Heat of formation + Delta-G solvation = -63.664247 kcal Electronic energy + Delta-G solvation = -14974.591044 eV Core-core repulsion = 12151.028060 eV Total energy + Delta-G solvation = -2823.562983 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.84060 -40.35448 -39.01500 -36.84391 -34.57077 -31.59853 -30.83610 -27.38439 -25.43111 -23.80825 -22.64235 -20.86770 -19.60331 -19.07907 -17.36272 -17.32914 -17.03688 -16.71939 -16.17101 -15.84857 -14.98184 -14.97129 -14.82400 -14.47553 -14.14680 -13.92249 -13.48815 -13.15641 -12.83078 -12.50008 -12.12082 -11.85026 -11.58535 -11.48597 -11.00419 -10.50505 -10.39805 -9.26009 -8.92477 -8.70562 -6.54775 -0.06399 0.03050 0.38880 1.01097 1.25765 1.45440 1.60665 1.68900 1.82151 2.14446 2.57213 3.41532 3.42854 3.89023 4.11009 4.36498 4.62211 4.64639 4.81074 4.85425 4.95971 5.18512 5.21437 5.63460 5.66537 5.74726 5.86026 6.27895 6.47259 6.62136 6.84016 7.98591 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.022443 B = 0.007977 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.295249 B = 3509.034810 C = 4678.234433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.036 3.964 3 Si 0.992 3.008 4 H -0.257 1.257 5 H -0.246 1.246 6 H -0.269 1.269 7 C -0.419 4.419 8 H 0.118 0.882 9 C 0.135 3.865 10 C -0.176 4.176 11 C -0.069 4.069 12 S 0.042 5.958 13 C -0.077 4.077 14 F -0.117 7.117 15 C -0.090 4.090 16 C -0.239 4.239 17 C 0.031 3.969 18 C -0.308 4.308 19 C 0.401 3.599 20 O -0.536 6.536 21 H 0.304 0.696 22 H 0.118 0.882 23 H 0.159 0.841 24 H 0.122 0.878 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 2.077 -1.498 2.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.181 1.181 5 H -0.169 1.169 6 H -0.193 1.193 7 C -0.445 4.445 8 H 0.136 0.864 9 C 0.127 3.873 10 C -0.203 4.203 11 C -0.184 4.184 12 S 0.300 5.700 13 C -0.209 4.209 14 F -0.096 7.096 15 C -0.121 4.121 16 C -0.243 4.243 17 C 0.010 3.990 18 C -0.311 4.311 19 C 0.268 3.732 20 O -0.418 6.418 21 H 0.116 0.884 22 H 0.135 0.865 23 H 0.176 0.824 24 H 0.140 0.860 25 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.190 2.428 -2.140 3.242 hybrid contribution 0.392 -0.500 0.497 0.806 sum 0.202 1.928 -1.643 2.541 Atomic orbital electron populations 1.69775 1.09748 1.32695 1.27655 1.27136 0.95465 1.05441 0.90671 0.84999 0.79522 0.74504 0.79925 1.18148 1.16905 1.19336 1.20250 0.99294 0.90769 1.34225 0.86402 1.18655 0.89863 0.91618 0.87119 1.20545 1.00830 0.94484 1.04416 1.22541 0.97831 0.97715 1.00353 1.83854 1.31559 0.99137 1.55495 1.21078 0.98526 0.91187 1.10063 1.91396 1.67666 1.65611 1.84913 1.20171 0.93786 1.01012 0.97111 1.17427 1.03616 0.91291 1.12011 1.21082 0.90038 0.97726 0.90121 1.21560 1.05028 0.93854 1.10640 1.23770 0.81890 0.92333 0.75176 1.90419 1.65570 1.35508 1.50291 0.88406 0.86457 0.82399 0.85969 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -33.05 10.98 21.87 0.24 -32.80 15 2 C 0.04 1.40 5.15 85.34 0.44 1.84 15 3 Si 0.99 29.01 29.59 68.60 2.03 31.04 15 4 H -0.26 -7.29 7.11 99.48 0.71 -6.58 15 5 H -0.25 -6.92 7.11 99.48 0.71 -6.21 15 6 H -0.27 -7.81 7.11 99.48 0.71 -7.10 15 7 C -0.42 -17.30 8.48 23.24 0.20 -17.10 15 8 H 0.12 4.23 6.67 -2.91 -0.02 4.22 15 9 C 0.13 6.11 5.71 -19.96 -0.11 6.00 15 10 C -0.18 -8.25 8.70 22.93 0.20 -8.05 15 11 C -0.07 -3.13 6.44 23.01 0.15 -2.98 15 12 S 0.04 1.69 23.29 -56.49 -1.32 0.38 15 13 C -0.08 -3.00 8.26 66.64 0.55 -2.45 15 14 F -0.12 -4.28 17.32 44.97 0.78 -3.50 15 15 C -0.09 -3.50 10.13 21.68 0.22 -3.28 15 16 C -0.24 -10.42 5.86 -21.34 -0.13 -10.54 15 17 C 0.03 1.31 9.60 23.09 0.22 1.54 15 18 C -0.31 -13.40 6.03 -18.81 -0.11 -13.51 15 19 C 0.40 15.63 11.02 69.92 0.77 16.40 15 20 O -0.54 -23.12 17.14 -3.35 -0.06 -23.18 15 21 H 0.30 11.49 8.29 -92.71 -0.77 10.72 15 22 H 0.12 5.64 6.21 -2.91 -0.02 5.62 15 23 H 0.16 5.19 8.06 -2.91 -0.02 5.17 15 24 H 0.12 4.90 7.60 -2.91 -0.02 4.88 15 25 H 0.12 3.95 6.67 -2.91 -0.02 3.93 15 Total: -1.00 -50.88 248.51 5.32 -45.56 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.25 Total: 14.64 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 2.39 Total: -32.14 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.24 Total: -32.80 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.06 Total: -23.18 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 29.01 SS G_CDS: 2.03 Total: 31.04 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.32 Total: 0.38 kcal Total: -50.88 5.32 -45.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302396.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.100 kcal (2) G-P(sol) polarization free energy of solvation -50.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds