Wall clock time and date at job start Mon Mar 30 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30426 * 1 3 3 Si 1.86799 * 119.99646 * 2 1 4 4 H 1.48507 * 109.47300 * 275.15302 * 3 2 1 5 5 H 1.48496 * 109.47494 * 35.15368 * 3 2 1 6 6 H 1.48505 * 109.47113 * 155.15781 * 3 2 1 7 7 C 1.40714 * 120.00335 * 179.72191 * 2 1 3 8 8 H 1.07994 * 119.99792 * 334.60445 * 7 2 1 9 9 C 1.39497 * 119.99975 * 154.60739 * 7 2 1 10 10 C 1.38927 * 123.36731 * 136.77386 * 9 7 2 11 11 C 1.41090 * 124.64982 * 359.97438 * 10 9 7 12 12 O 1.21505 * 120.00022 * 174.44140 * 11 10 9 13 13 S 1.75170 * 110.70452 * 179.85834 * 10 9 7 14 14 C 1.75863 * 92.84694 * 0.34542 * 13 10 9 15 15 C 1.39350 * 110.84612 * 359.80639 * 14 13 10 16 16 C 1.40880 * 119.07917 * 179.97438 * 15 14 13 17 17 C 1.37355 * 120.51064 * 0.04728 * 16 15 14 18 18 C 1.38657 * 120.30162 * 359.92837 * 17 16 15 19 19 C 1.37715 * 120.11578 * 0.04646 * 18 17 16 20 20 F 1.35094 * 119.78497 * 179.97438 * 19 18 17 21 21 H 0.96997 * 120.00697 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.99624 * 354.44985 * 11 10 9 23 23 H 1.07994 * 119.74148 * 179.97438 * 16 15 14 24 24 H 1.08007 * 119.84598 * 179.97438 * 17 16 15 25 25 H 1.07999 * 119.94693 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3043 0.0000 0.0000 3 14 2.2382 1.6178 0.0000 4 1 2.3768 2.1094 -1.3945 5 1 1.4943 2.6188 0.8061 6 1 3.5860 1.4113 0.5882 7 6 2.0079 -1.2186 0.0059 8 1 1.5462 -2.1067 0.4113 9 6 3.3018 -1.2793 -0.5118 10 6 4.3411 -1.9629 0.1069 11 6 4.2240 -2.6727 1.3206 12 8 5.1613 -3.3249 1.7358 13 16 5.8159 -1.8255 -0.8282 14 6 5.0464 -0.8340 -2.0600 15 6 3.7021 -0.6238 -1.7590 16 6 2.9175 0.1520 -2.6349 17 6 3.4686 0.6934 -3.7706 18 6 4.8066 0.4832 -4.0677 19 6 5.5913 -0.2717 -3.2246 20 9 6.8939 -0.4726 -3.5208 21 1 -0.4851 0.8400 -0.0004 22 1 3.3011 -2.6363 1.8805 23 1 1.8745 0.3214 -2.4122 24 1 2.8571 1.2861 -4.4349 25 1 5.2340 0.9119 -4.9621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396303247.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:34 Heat of formation + Delta-G solvation = -51.385234 kcal Electronic energy + Delta-G solvation = -15450.720884 eV Core-core repulsion = 12627.690359 eV Total energy + Delta-G solvation = -2823.030525 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.48281 -38.90984 -37.42109 -35.14019 -33.31957 -30.16888 -29.39438 -27.07257 -23.75899 -22.57124 -20.78663 -19.80383 -17.86667 -16.85828 -16.25611 -16.08124 -15.35477 -15.22559 -14.75967 -14.52098 -13.52315 -13.44593 -13.15560 -13.05370 -12.54279 -12.42857 -12.10882 -11.90944 -11.47831 -10.94545 -10.74482 -10.52405 -10.10614 -9.95045 -9.60424 -8.65923 -8.52945 -7.91494 -7.61921 -7.05515 -5.01182 1.01474 1.51296 2.36980 2.43526 2.78733 2.84783 2.97198 3.31271 3.55768 3.87007 3.92599 4.55651 4.65622 5.09569 5.24557 5.54267 5.63127 5.96740 6.11505 6.31821 6.37619 6.44106 6.48923 6.71008 7.10517 7.23907 7.24918 7.63556 7.87630 8.04821 8.88112 9.33769 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.013942 C = 0.008539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.062391 B = 2007.909429 C = 3278.347554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.089 3.911 3 Si 0.881 3.119 4 H -0.242 1.242 5 H -0.271 1.271 6 H -0.239 1.239 7 C -0.392 4.392 8 H 0.114 0.886 9 C 0.128 3.872 10 C -0.445 4.445 11 C 0.407 3.593 12 O -0.547 6.547 13 S 0.078 5.922 14 C -0.145 4.145 15 C -0.066 4.066 16 C -0.076 4.076 17 C -0.124 4.124 18 C -0.136 4.136 19 C 0.102 3.898 20 F -0.142 7.142 21 H 0.299 0.701 22 H 0.083 0.917 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 5.600 -6.022 8.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.139 4.139 3 Si 0.702 3.298 4 H -0.166 1.166 5 H -0.196 1.196 6 H -0.162 1.162 7 C -0.420 4.420 8 H 0.131 0.869 9 C 0.118 3.882 10 C -0.560 4.560 11 C 0.279 3.721 12 O -0.434 6.434 13 S 0.341 5.659 14 C -0.262 4.262 15 C -0.076 4.076 16 C -0.096 4.096 17 C -0.146 4.146 18 C -0.157 4.157 19 C 0.076 3.924 20 F -0.121 7.121 21 H 0.110 0.890 22 H 0.099 0.901 23 H 0.149 0.851 24 H 0.148 0.852 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.204 4.711 -5.468 7.547 hybrid contribution -1.224 1.269 -0.378 1.803 sum 0.980 5.981 -5.846 8.420 Atomic orbital electron populations 1.69547 1.08604 1.32064 1.26665 1.26438 0.94601 1.02220 0.90625 0.86743 0.82416 0.79365 0.81255 1.16590 1.19594 1.16192 1.19275 0.94668 0.97504 1.30552 0.86866 1.17753 0.92581 0.89317 0.88566 1.23080 0.95313 1.30390 1.07249 1.21012 0.90422 0.76676 0.84027 1.90445 1.42668 1.39397 1.70922 1.83502 1.13233 1.52878 1.16336 1.22970 0.98765 1.05043 0.99437 1.19589 0.91452 0.99770 0.96760 1.21182 1.00207 0.95050 0.93156 1.20607 0.94279 1.01928 0.97781 1.20814 0.94553 1.00568 0.99777 1.17001 0.78532 1.02070 0.94791 1.91450 1.33787 1.93773 1.93072 0.88957 0.90100 0.85133 0.85228 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -15.96 13.91 55.59 0.77 -15.19 15 2 C 0.09 1.91 4.39 -17.21 -0.08 1.83 15 3 Si 0.88 17.04 24.73 -169.99 -4.20 12.83 15 4 H -0.24 -4.35 5.85 56.52 0.33 -4.02 15 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 6 H -0.24 -5.08 7.11 56.52 0.40 -4.68 15 7 C -0.39 -8.95 8.70 -38.18 -0.33 -9.28 15 8 H 0.11 2.66 7.97 -52.49 -0.42 2.24 15 9 C 0.13 2.96 4.67 -105.86 -0.49 2.46 15 10 C -0.44 -10.66 6.24 -38.25 -0.24 -10.90 15 11 C 0.41 9.62 10.97 31.81 0.35 9.97 15 12 O -0.55 -14.18 17.60 5.36 0.09 -14.09 15 13 S 0.08 1.77 22.81 -107.50 -2.45 -0.68 15 14 C -0.15 -3.13 6.40 -38.38 -0.25 -3.37 15 15 C -0.07 -1.43 4.82 -105.17 -0.51 -1.93 15 16 C -0.08 -1.44 6.78 -38.90 -0.26 -1.70 15 17 C -0.12 -1.96 10.01 -39.75 -0.40 -2.36 15 18 C -0.14 -2.16 10.00 -39.62 -0.40 -2.56 15 19 C 0.10 1.93 7.33 -38.99 -0.29 1.64 15 20 F -0.14 -2.63 17.26 2.25 0.04 -2.60 15 21 H 0.30 5.64 8.29 -40.82 -0.34 5.30 15 22 H 0.08 1.74 7.56 -52.48 -0.40 1.34 15 23 H 0.13 2.41 5.89 -52.49 -0.31 2.10 15 24 H 0.13 1.59 8.06 -52.48 -0.42 1.17 15 25 H 0.13 1.66 8.06 -52.49 -0.42 1.23 15 LS Contribution 242.49 15.07 3.65 3.65 Total: -1.00 -26.01 242.49 -6.16 -32.17 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -1.17 Total: 0.11 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.89 Total: -16.20 kcal Atomic # 7 Polarization: -15.96 SS G_CDS: 0.77 Total: -15.19 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.09 Total: -14.09 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -4.20 Total: 12.83 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.45 Total: -0.68 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -26.01 -6.16 -32.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303247.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.216 kcal (2) G-P(sol) polarization free energy of solvation -26.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds