Wall clock time and date at job start Mon Mar 30 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86796 * 120.00043 * 2 1 4 4 H 1.48500 * 109.47080 * 89.99636 * 3 2 1 5 5 H 1.48506 * 109.47169 * 209.99715 * 3 2 1 6 6 H 1.48501 * 109.47294 * 329.99685 * 3 2 1 7 7 C 1.39871 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00056 * 17.83491 * 7 2 1 9 9 C 1.41135 * 120.00166 * 197.82965 * 7 2 1 10 10 C 1.41099 * 120.15412 * 28.82431 * 9 7 2 11 11 C 1.35667 * 120.12616 * 180.02562 * 10 9 7 12 12 C 1.40615 * 120.91487 * 359.97438 * 11 10 9 13 13 S 1.75878 * 130.07102 * 179.97438 * 12 11 10 14 14 C 1.69974 * 93.18710 * 180.02562 * 13 12 11 15 15 C 1.35327 * 112.14799 * 0.02562 * 14 13 12 16 16 C 1.41597 * 123.19408 * 180.02562 * 15 14 13 17 17 O 1.21432 * 119.99658 * 179.97438 * 16 15 14 18 18 C 1.39631 * 120.00557 * 0.02562 * 12 11 10 19 19 C 1.40270 * 119.37372 * 359.74451 * 18 12 11 20 20 F 1.35107 * 120.05678 * 180.27082 * 19 18 12 21 21 H 0.96994 * 120.00193 * 175.43930 * 1 2 3 22 22 H 1.08002 * 119.93275 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.54072 * 180.02562 * 11 10 9 24 24 H 1.07996 * 123.92167 * 180.02562 * 14 13 12 25 25 H 1.08002 * 120.00370 * 359.96516 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4905 2.0464 1.4001 5 1 3.5408 1.4401 -0.7000 6 1 1.4406 2.6527 -0.7001 7 6 2.0084 -1.2114 0.0005 8 1 1.5073 -2.1243 -0.2855 9 6 3.3689 -1.2407 0.3748 10 6 3.8741 -0.2890 1.2859 11 6 5.1821 -0.3174 1.6449 12 6 6.0541 -1.2882 1.1210 13 16 7.7690 -1.5458 1.4141 14 6 7.8446 -2.8811 0.3651 15 6 6.6465 -3.1525 -0.2025 16 6 6.4439 -4.2166 -1.1144 17 8 5.3427 -4.4081 -1.5890 18 6 5.5774 -2.2403 0.2177 19 6 4.2250 -2.2197 -0.1539 20 9 3.7479 -3.1379 -1.0227 21 1 -0.4850 -0.8373 -0.0668 22 1 3.2181 0.4634 1.6983 23 1 5.5586 0.4153 2.3433 24 1 8.7443 -3.4471 0.1738 25 1 7.2688 -4.8578 -1.3880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396304722.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:07 Heat of formation + Delta-G solvation = -65.623025 kcal Electronic energy + Delta-G solvation = -15569.185498 eV Core-core repulsion = 12745.537576 eV Total energy + Delta-G solvation = -2823.647922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.04226 -40.54332 -39.28263 -36.71855 -35.15204 -31.92292 -30.51255 -27.42738 -26.07694 -24.14964 -22.52361 -21.08046 -19.68922 -19.12312 -17.82401 -17.41165 -16.39672 -16.19412 -16.11987 -15.92032 -15.44335 -15.11368 -14.92610 -14.65928 -14.00918 -13.87197 -13.63320 -13.05357 -12.73575 -12.42224 -12.18447 -11.73740 -11.66210 -11.51714 -10.95598 -10.54025 -10.18140 -9.65462 -9.42716 -8.59553 -6.68310 -0.45758 0.34822 0.64865 0.68573 1.04011 1.29269 1.49333 1.71614 2.04662 2.14349 2.47399 3.15755 3.52448 3.80714 3.93587 4.17666 4.29765 4.55844 4.64916 4.70170 5.01237 5.15197 5.26634 5.31953 5.37573 5.63400 5.77646 6.09678 6.36417 6.59839 6.78176 7.80673 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.009454 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.238384 B = 2960.921994 C = 3825.055437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.011 3.989 3 Si 1.102 2.898 4 H -0.230 1.230 5 H -0.264 1.264 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.035 0.965 9 C 0.053 3.947 10 C -0.200 4.200 11 C -0.041 4.041 12 C -0.269 4.269 13 S 0.250 5.750 14 C -0.125 4.125 15 C -0.255 4.255 16 C 0.378 3.622 17 O -0.507 6.507 18 C -0.049 4.049 19 C -0.053 4.053 20 F -0.153 7.153 21 H 0.278 0.722 22 H 0.134 0.866 23 H 0.159 0.841 24 H 0.229 0.771 25 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.623 0.675 4.417 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.203 4.203 3 Si 0.920 3.080 4 H -0.155 1.155 5 H -0.189 1.189 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.221 4.221 11 C -0.062 4.062 12 C -0.383 4.383 13 S 0.516 5.484 14 C -0.263 4.263 15 C -0.273 4.273 16 C 0.239 3.761 17 O -0.385 6.385 18 C -0.055 4.055 19 C -0.076 4.076 20 F -0.132 7.132 21 H 0.088 0.912 22 H 0.151 0.849 23 H 0.176 0.824 24 H 0.246 0.754 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 18.795 2.836 5.099 19.680 hybrid contribution -2.185 -3.264 -1.462 4.191 sum 16.610 -0.428 3.637 17.009 Atomic orbital electron populations 1.70625 1.08454 1.32566 1.33208 1.28663 0.95768 1.06873 0.89009 0.83339 0.74619 0.69604 0.80443 1.15466 1.18913 1.19975 1.20484 0.96083 0.96580 1.43469 0.94654 1.17893 0.92807 0.92366 0.92088 1.20933 0.96937 1.02652 1.01564 1.20275 0.91457 0.96373 0.98102 1.22570 1.00980 1.04961 1.09828 1.82018 0.99262 1.24452 1.42626 1.26050 1.01242 1.01347 0.97653 1.20119 0.93691 1.04060 1.09390 1.23102 0.91940 0.83584 0.77437 1.90730 1.30277 1.69041 1.48481 1.19089 0.92113 0.96480 0.97803 1.18013 0.91683 0.97289 1.00567 1.91376 1.89017 1.64899 1.67941 0.91161 0.84868 0.82386 0.75408 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.62 13.66 21.82 0.30 -46.32 15 2 C 0.01 0.61 5.41 85.23 0.46 1.07 15 3 Si 1.10 47.00 24.90 68.60 1.71 48.70 15 4 H -0.23 -8.26 6.42 99.48 0.64 -7.62 15 5 H -0.26 -11.31 7.04 99.48 0.70 -10.61 15 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 7 C -0.54 -32.23 9.11 23.38 0.21 -32.02 15 8 H 0.04 2.35 7.94 -2.91 -0.02 2.33 15 9 C 0.05 2.90 5.13 -21.34 -0.11 2.79 15 10 C -0.20 -9.08 7.18 22.38 0.16 -8.92 15 11 C -0.04 -1.53 9.99 22.25 0.22 -1.31 15 12 C -0.27 -9.95 6.48 23.19 0.15 -9.79 15 13 S 0.25 5.65 22.97 -56.49 -1.30 4.35 15 14 C -0.13 -2.70 10.62 67.15 0.71 -1.99 15 15 C -0.26 -8.67 5.82 -20.92 -0.12 -8.79 15 16 C 0.38 12.54 11.28 68.65 0.77 13.31 15 17 O -0.51 -23.69 13.89 -3.50 -0.05 -23.74 15 18 C -0.05 -2.18 6.01 -20.24 -0.12 -2.30 15 19 C -0.05 -2.90 7.33 23.29 0.17 -2.73 15 20 F -0.15 -9.33 12.92 44.97 0.58 -8.74 15 21 H 0.28 15.82 8.73 -92.71 -0.81 15.01 15 22 H 0.13 5.63 4.39 -2.91 -0.01 5.62 15 23 H 0.16 4.31 8.06 -2.91 -0.02 4.29 15 24 H 0.23 2.12 8.06 -2.91 -0.02 2.10 15 25 H 0.16 2.89 8.06 -2.91 -0.02 2.87 15 Total: -1.00 -77.75 238.49 4.88 -72.86 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 1.13 Total: 3.57 kcal Atomic # 6 Polarization: -53.19 SS G_CDS: 2.51 Total: -50.68 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.30 Total: -46.32 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 9 Polarization: -9.33 SS G_CDS: 0.58 Total: -8.74 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.71 Total: 48.70 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.30 Total: 4.35 kcal Total: -77.75 4.88 -72.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396304722.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.239 kcal (2) G-P(sol) polarization free energy of solvation -77.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds