Wall clock time and date at job start Mon Mar 30 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48503 * 109.47399 * 240.00042 * 3 2 1 5 5 H 1.48503 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 119.99436 * 3 2 1 7 7 C 1.40126 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.39785 * 119.99470 * 0.02562 * 7 2 1 10 10 S 1.75411 * 124.79699 * 359.69238 * 9 7 2 11 11 C 1.76056 * 91.89356 * 179.97438 * 10 9 7 12 12 C 1.39982 * 129.98549 * 180.02562 * 11 10 9 13 13 C 1.36095 * 120.83157 * 180.30032 * 12 11 10 14 14 C 1.40575 * 120.20189 * 0.02562 * 13 12 11 15 15 C 1.46871 * 119.96385 * 180.02562 * 14 13 12 16 16 O 1.21295 * 119.99856 * 0.02562 * 15 14 13 17 17 C 1.38879 * 120.07522 * 0.02562 * 14 13 12 18 18 C 1.40519 * 109.94388 * 0.31918 * 11 10 9 19 19 C 1.37186 * 124.79341 * 179.97438 * 9 7 2 20 20 F 1.35099 * 122.55673 * 359.95366 * 19 9 7 21 21 H 0.96996 * 119.99897 * 0.02562 * 1 2 3 22 22 H 1.07997 * 119.58731 * 0.31265 * 12 11 10 23 23 H 1.08001 * 119.89574 * 179.97438 * 13 12 11 24 24 H 1.08004 * 119.99855 * 179.97438 * 15 14 13 25 25 H 1.08004 * 119.95932 * 180.02562 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0090 -1.2135 0.0005 8 1 3.0890 -1.2134 0.0001 9 6 1.3100 -2.4240 0.0005 10 16 -0.4379 -2.5707 0.0076 11 6 -0.3488 -4.3290 0.0021 12 6 -1.3744 -5.2817 0.0033 13 6 -1.0901 -6.6126 0.0044 14 6 0.2457 -7.0504 0.0050 15 6 0.5466 -8.4880 0.0056 16 8 -0.3574 -9.2967 0.0052 17 6 1.2814 -6.1251 0.0049 18 6 0.9947 -4.7408 0.0025 19 6 1.8943 -3.6653 0.0005 20 9 3.2342 -3.8381 -0.0004 21 1 -0.4850 0.8400 -0.0004 22 1 -2.4042 -4.9565 0.0031 23 1 -1.8933 -7.3346 0.0057 24 1 1.5727 -8.8249 0.0057 25 1 2.3070 -6.4635 0.0049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396304887.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:23 Heat of formation + Delta-G solvation = -68.517987 kcal Electronic energy + Delta-G solvation = -14923.374487 eV Core-core repulsion = 12099.601030 eV Total energy + Delta-G solvation = -2823.773457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.02272 -39.06594 -37.54294 -35.03611 -33.07890 -30.52253 -29.42325 -25.69858 -24.28430 -21.81932 -21.26180 -19.03359 -18.19254 -16.65414 -16.21996 -15.49075 -15.40314 -14.64068 -14.18258 -14.10464 -13.74787 -13.44574 -13.13946 -12.93937 -12.33149 -12.09387 -12.05780 -11.73284 -11.21177 -10.77971 -10.60992 -10.44414 -10.19742 -9.52302 -9.46387 -9.28537 -8.66509 -7.77094 -7.41891 -6.61687 -4.86240 1.26875 1.81888 2.67890 2.73987 2.79384 2.90158 2.94560 3.33330 3.35906 3.55308 4.40696 4.70851 4.73365 5.43430 5.68271 5.75644 5.99681 6.14760 6.43507 6.47124 6.65013 6.72859 6.89670 7.06438 7.17085 7.45491 7.63626 7.69568 7.83472 8.07475 8.14613 9.42000 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.047321 B = 0.006288 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.558547 B = 4451.720829 C = 5033.434704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.052 3.948 3 Si 0.944 3.056 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.365 4.365 8 H 0.105 0.895 9 C 0.014 3.986 10 S 0.193 5.807 11 C -0.232 4.232 12 C -0.067 4.067 13 C -0.130 4.130 14 C -0.188 4.188 15 C 0.388 3.612 16 O -0.481 6.481 17 C -0.075 4.075 18 C -0.023 4.023 19 C -0.167 4.167 20 F -0.157 7.157 21 H 0.307 0.693 22 H 0.111 0.889 23 H 0.117 0.883 24 H 0.093 0.907 25 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 -0.196 0.016 0.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.399 4.399 8 H 0.122 0.878 9 C -0.106 4.106 10 S 0.455 5.545 11 C -0.348 4.348 12 C -0.089 4.089 13 C -0.151 4.151 14 C -0.192 4.192 15 C 0.249 3.751 16 O -0.357 6.357 17 C -0.096 4.096 18 C -0.032 4.032 19 C -0.192 4.192 20 F -0.137 7.137 21 H 0.120 0.880 22 H 0.129 0.871 23 H 0.135 0.865 24 H 0.109 0.891 25 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.579 0.597 0.023 1.688 hybrid contribution 1.852 -0.213 -0.010 1.864 sum 0.273 0.384 0.013 0.471 Atomic orbital electron populations 1.68546 1.07871 1.31731 1.31622 1.26374 0.95183 1.03283 0.92140 0.85694 0.79689 0.77175 0.80793 1.18080 1.19471 1.18073 1.19285 0.96189 0.88343 1.36060 0.87759 1.21381 0.96450 0.95113 0.97691 1.84914 1.02008 0.90572 1.77025 1.23772 0.95650 1.03308 1.12036 1.19882 0.96880 0.91748 1.00416 1.20440 0.95101 0.95038 1.04479 1.20288 0.94532 0.94856 1.09524 1.23943 0.93810 0.87842 0.69482 1.90454 1.51485 1.57120 1.36648 1.21080 0.97592 0.91219 0.99672 1.17700 0.92336 0.92685 1.00490 1.15995 0.76913 0.91120 1.35168 1.91202 1.29828 1.95952 1.96705 0.87983 0.87076 0.86471 0.89059 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -16.76 10.58 55.56 0.59 -16.17 15 2 C 0.05 1.13 5.50 -17.27 -0.09 1.03 15 3 Si 0.94 16.03 29.56 -169.99 -5.03 11.00 15 4 H -0.26 -4.35 7.11 56.52 0.40 -3.95 15 5 H -0.27 -4.39 7.11 56.52 0.40 -3.98 15 6 H -0.26 -4.35 7.11 56.52 0.40 -3.94 15 7 C -0.37 -8.75 9.13 -38.30 -0.35 -9.10 15 8 H 0.10 2.43 7.79 -52.49 -0.41 2.02 15 9 C 0.01 0.35 6.11 -39.39 -0.24 0.11 15 10 S 0.19 4.41 20.11 -107.50 -2.16 2.25 15 11 C -0.23 -5.22 6.48 -38.07 -0.25 -5.46 15 12 C -0.07 -1.33 9.98 -39.70 -0.40 -1.73 15 13 C -0.13 -2.48 9.53 -39.47 -0.38 -2.86 15 14 C -0.19 -3.53 5.85 -105.29 -0.62 -4.15 15 15 C 0.39 6.23 11.43 34.22 0.39 6.62 15 16 O -0.48 -8.98 17.15 5.54 0.10 -8.89 15 17 C -0.08 -1.52 9.80 -38.16 -0.37 -1.89 15 18 C -0.02 -0.55 5.85 -107.11 -0.63 -1.18 15 19 C -0.17 -4.21 7.46 -39.22 -0.29 -4.50 15 20 F -0.16 -3.93 17.07 2.25 0.04 -3.89 15 21 H 0.31 5.90 8.30 -40.82 -0.34 5.56 15 22 H 0.11 1.93 8.06 -52.49 -0.42 1.51 15 23 H 0.12 2.08 7.63 -52.49 -0.40 1.68 15 24 H 0.09 1.10 8.06 -52.48 -0.42 0.68 15 25 H 0.12 2.08 8.06 -52.48 -0.42 1.66 15 LS Contribution 250.79 15.07 3.78 3.78 Total: -1.00 -26.66 250.79 -7.12 -33.78 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -1.21 Total: 1.23 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -3.22 Total: -23.11 kcal Atomic # 7 Polarization: -16.76 SS G_CDS: 0.59 Total: -16.17 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.10 Total: -8.89 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -5.03 Total: 11.00 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -2.16 Total: 2.25 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.66 -7.12 -33.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396304887.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.738 kcal (2) G-P(sol) polarization free energy of solvation -26.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds