Wall clock time and date at job start Mon Mar 30 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86795 * 119.99857 * 2 1 4 4 H 1.48499 * 109.46847 * 239.99376 * 3 2 1 5 5 H 1.48505 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47334 * 119.99638 * 3 2 1 7 7 C 1.39941 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99738 * 162.65413 * 7 2 1 9 9 C 1.40676 * 120.00386 * 342.64976 * 7 2 1 10 10 C 1.39812 * 120.23453 * 334.35058 * 9 7 2 11 11 C 1.39508 * 119.98388 * 180.02562 * 10 9 7 12 12 C 1.46775 * 119.70391 * 179.97438 * 11 10 9 13 13 O 1.21306 * 119.99456 * 359.97438 * 12 11 10 14 14 C 1.40089 * 120.59470 * 359.97067 * 11 10 9 15 15 F 1.35098 * 119.37927 * 180.02562 * 14 11 10 16 16 C 1.39548 * 121.23594 * 0.04817 * 14 11 10 17 17 S 1.76107 * 130.40551 * 179.97438 * 16 14 11 18 18 C 1.75504 * 91.48773 * 179.97438 * 17 16 14 19 19 C 1.32876 * 110.62940 * 359.73816 * 18 17 16 20 20 C 1.39783 * 120.25792 * 359.95464 * 16 14 11 21 21 H 0.96996 * 120.00290 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.00737 * 359.97438 * 10 9 7 23 23 H 1.07999 * 119.99646 * 179.97438 * 12 11 10 24 24 H 1.08001 * 124.68756 * 180.02562 * 18 17 16 25 25 H 1.07998 * 122.06853 * 180.30354 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0966 1.6963 -1.2124 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0084 -1.2120 0.0005 8 1 3.0516 -1.2333 -0.2783 9 6 1.3531 -2.4024 0.3644 10 6 0.2386 -2.3631 1.2076 11 6 -0.4070 -3.5468 1.5655 12 6 -1.5761 -3.4985 2.4516 13 8 -1.9765 -2.4324 2.8696 14 6 0.0505 -4.7813 1.0867 15 9 -0.5936 -5.9125 1.4486 16 6 1.1593 -4.8646 0.2435 17 16 1.9326 -6.2663 -0.4903 18 6 3.1270 -5.2513 -1.2798 19 6 2.9179 -3.9712 -0.9911 20 6 1.8390 -3.7059 -0.1427 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1219 -1.4165 1.5825 23 1 -2.0797 -4.4120 2.7313 24 1 3.9194 -5.6162 -1.9165 25 1 3.5445 -3.1848 -1.3851 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396305551.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:27 Heat of formation + Delta-G solvation = -61.565585 kcal Electronic energy + Delta-G solvation = -15305.775741 eV Core-core repulsion = 12482.303762 eV Total energy + Delta-G solvation = -2823.471978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.50045 -40.37896 -39.27344 -36.39021 -35.11871 -31.70706 -30.49005 -27.28899 -25.78760 -23.68897 -22.56814 -20.98100 -19.67671 -18.67929 -17.77995 -17.25349 -16.74593 -16.40867 -16.20474 -15.80291 -15.15494 -15.04396 -14.93282 -14.40683 -14.05420 -13.67257 -13.42015 -12.99049 -12.88985 -12.43630 -12.36637 -11.96224 -11.73668 -11.49091 -11.16380 -10.72656 -10.12210 -9.34604 -8.93539 -8.62527 -6.43492 -0.50397 0.54779 0.76624 0.99489 1.25668 1.37538 1.49366 1.52985 1.92818 2.10412 2.48707 3.34998 3.41544 3.64086 4.14572 4.28369 4.44495 4.65904 4.83146 4.85729 5.00723 5.11804 5.35219 5.52975 5.72296 5.80018 5.85762 6.29395 6.44756 6.54198 6.61525 8.01065 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.009985 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.337272 B = 2803.492126 C = 4161.000626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.029 3.971 3 Si 0.994 3.006 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.433 4.433 8 H 0.104 0.896 9 C 0.102 3.898 10 C -0.137 4.137 11 C -0.174 4.174 12 C 0.393 3.607 13 O -0.497 6.497 14 C -0.002 4.002 15 F -0.152 7.152 16 C -0.145 4.145 17 S 0.067 5.933 18 C -0.232 4.232 19 C -0.093 4.093 20 C -0.166 4.166 21 H 0.301 0.699 22 H 0.122 0.878 23 H 0.139 0.861 24 H 0.194 0.806 25 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 -3.515 -1.573 5.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.191 4.191 3 Si 0.813 3.187 4 H -0.172 1.172 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.459 4.459 8 H 0.122 0.878 9 C 0.097 3.903 10 C -0.159 4.159 11 C -0.178 4.178 12 C 0.255 3.745 13 O -0.373 6.373 14 C -0.029 4.029 15 F -0.131 7.131 16 C -0.261 4.261 17 S 0.329 5.671 18 C -0.365 4.365 19 C -0.122 4.122 20 C -0.173 4.173 21 H 0.112 0.888 22 H 0.140 0.860 23 H 0.155 0.845 24 H 0.211 0.789 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.653 -4.424 -1.403 5.906 hybrid contribution 0.144 1.857 -0.016 1.863 sum 3.797 -2.567 -1.419 4.798 Atomic orbital electron populations 1.69851 1.09575 1.32351 1.29534 1.27112 0.95527 1.05499 0.90950 0.85040 0.78716 0.74188 0.80800 1.17157 1.19256 1.17996 1.20023 0.99016 0.91147 1.35729 0.87829 1.18744 0.91317 0.91060 0.89170 1.21238 0.98470 0.96181 1.00011 1.20531 1.00983 0.92564 1.03697 1.24262 0.81700 0.93166 0.75367 1.90453 1.62893 1.36290 1.47654 1.16291 0.97296 0.81055 1.08228 1.91309 1.81138 1.49396 1.91225 1.22558 1.00636 0.98537 1.04323 1.83497 1.26918 1.07718 1.48973 1.25305 1.05950 0.95372 1.09885 1.19853 0.97074 0.97165 0.98115 1.19417 1.00797 0.92475 1.04660 0.88815 0.85986 0.84491 0.78907 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.28 10.99 21.83 0.24 -38.04 15 2 C 0.03 1.32 5.13 85.25 0.44 1.76 15 3 Si 0.99 33.46 29.59 68.60 2.03 35.49 15 4 H -0.25 -7.83 7.11 99.48 0.71 -7.13 15 5 H -0.27 -8.75 7.11 99.48 0.71 -8.04 15 6 H -0.26 -8.49 7.11 99.48 0.71 -7.78 15 7 C -0.43 -20.50 8.79 23.28 0.20 -20.30 15 8 H 0.10 4.47 7.50 -2.91 -0.02 4.45 15 9 C 0.10 5.15 5.74 -19.69 -0.11 5.04 15 10 C -0.14 -7.02 8.18 22.96 0.19 -6.84 15 11 C -0.17 -8.12 5.85 -20.29 -0.12 -8.24 15 12 C 0.39 16.09 11.20 70.05 0.78 16.87 15 13 O -0.50 -23.11 17.11 -3.11 -0.05 -23.17 15 14 C 0.00 -0.09 7.30 23.04 0.17 0.07 15 15 F -0.15 -6.19 16.48 44.97 0.74 -5.45 15 16 C -0.14 -6.49 6.44 22.96 0.15 -6.35 15 17 S 0.07 2.42 23.30 -56.49 -1.32 1.10 15 18 C -0.23 -7.59 11.12 66.64 0.74 -6.85 15 19 C -0.09 -3.58 9.73 21.47 0.21 -3.37 15 20 C -0.17 -7.67 6.02 -19.92 -0.12 -7.79 15 21 H 0.30 13.17 8.30 -92.71 -0.77 12.40 15 22 H 0.12 6.68 5.72 -2.91 -0.02 6.66 15 23 H 0.14 4.34 7.66 -2.91 -0.02 4.32 15 24 H 0.19 4.65 8.06 -2.91 -0.02 4.62 15 25 H 0.15 5.07 7.69 -2.91 -0.02 5.05 15 Total: -1.00 -56.92 249.23 5.42 -51.51 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.24 Total: 14.55 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 2.53 Total: -35.99 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.24 Total: -38.04 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.74 Total: -5.45 kcal Atomic # 14 Polarization: 33.46 SS G_CDS: 2.03 Total: 35.49 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.32 Total: 1.10 kcal Total: -56.92 5.42 -51.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305551.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.057 kcal (2) G-P(sol) polarization free energy of solvation -56.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds