Wall clock time and date at job start Mon Mar 30 2020 06:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86798 * 120.00120 * 2 1 4 4 H 1.48504 * 109.46983 * 270.00213 * 3 2 1 5 5 H 1.48497 * 109.47096 * 30.00087 * 3 2 1 6 6 H 1.48499 * 109.47443 * 150.00439 * 3 2 1 7 7 C 1.39880 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99739 * 162.27505 * 7 2 1 9 9 C 1.41045 * 120.00437 * 342.55097 * 7 2 1 10 10 C 1.40231 * 119.79699 * 333.86724 * 9 7 2 11 11 C 1.38749 * 121.16281 * 179.71629 * 10 9 7 12 12 S 1.76118 * 130.36573 * 180.17496 * 11 10 9 13 13 C 1.75484 * 91.51350 * 180.34793 * 12 11 10 14 14 C 1.32848 * 110.73107 * 359.97438 * 13 12 11 15 15 C 1.39810 * 115.90140 * 0.02562 * 14 13 12 16 16 C 1.47727 * 128.89250 * 179.97438 * 15 14 13 17 17 C 1.46430 * 120.17837 * 0.06941 * 16 15 14 18 18 O 1.21346 * 119.99907 * 359.96629 * 17 16 15 19 19 C 1.38754 * 119.64248 * 180.02562 * 16 15 14 20 20 F 1.35097 * 120.04772 * 179.97438 * 19 16 15 21 21 H 0.96996 * 119.99599 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.42058 * 359.97401 * 10 9 7 23 23 H 1.07996 * 124.63589 * 179.97438 * 13 12 11 24 24 H 1.08002 * 122.04941 * 180.02562 * 14 13 12 25 25 H 1.08004 * 120.00069 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6526 0.7000 6 1 3.5406 1.4402 0.6999 7 6 2.0084 -1.2114 -0.0005 8 1 3.0500 -1.2335 -0.2853 9 6 1.3519 -2.4050 0.3652 10 6 0.2423 -2.3559 1.2213 11 6 -0.4282 -3.5118 1.5947 12 16 -1.8305 -3.7307 2.6374 13 6 -1.7863 -5.4701 2.4100 14 6 -0.7843 -5.8143 1.6085 15 6 0.0018 -4.7629 1.1275 16 6 1.1738 -4.8165 0.2298 17 6 1.6524 -6.1031 -0.2798 18 8 1.0865 -7.1291 0.0356 19 6 1.8179 -3.6410 -0.1286 20 9 2.8908 -3.6805 -0.9487 21 1 -0.4849 0.8400 0.0004 22 1 -0.0989 -1.4010 1.5933 23 1 -2.4790 -6.1658 2.8601 24 1 -0.5890 -6.8432 1.3446 25 1 2.5093 -6.1389 -0.9364 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396306413.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:55 Heat of formation + Delta-G solvation = -58.585091 kcal Electronic energy + Delta-G solvation = -15328.213431 eV Core-core repulsion = 12504.870697 eV Total energy + Delta-G solvation = -2823.342734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.67307 -40.46816 -38.99795 -36.80876 -34.66971 -31.82752 -30.76739 -27.14946 -25.65205 -24.06985 -22.28918 -21.29658 -19.43118 -18.37992 -17.98584 -17.61957 -16.85978 -16.41977 -16.01310 -15.84549 -15.20408 -15.04699 -14.97503 -14.07957 -14.07051 -13.78904 -13.69113 -13.11658 -12.85786 -12.50044 -12.27481 -11.95316 -11.67114 -11.57741 -10.98967 -10.60397 -10.31679 -9.31016 -8.84906 -8.60174 -6.47226 -0.54258 0.25671 0.84353 1.27872 1.30428 1.40602 1.48692 1.54801 1.75580 2.15032 2.56083 3.22654 3.36423 3.46036 4.02877 4.34227 4.44006 4.58924 4.65816 4.93899 5.10633 5.12861 5.18428 5.53893 5.68527 5.72083 5.79501 6.26551 6.43346 6.56667 6.57892 8.10994 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.009013 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.859305 B = 3105.786477 C = 4237.894113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.460 4.460 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.134 4.134 11 C -0.121 4.121 12 S 0.048 5.952 13 C -0.229 4.229 14 C -0.102 4.102 15 C -0.147 4.147 16 C -0.187 4.187 17 C 0.394 3.606 18 O -0.489 6.489 19 C 0.078 3.922 20 F -0.135 7.135 21 H 0.298 0.702 22 H 0.119 0.881 23 H 0.190 0.810 24 H 0.147 0.853 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -1.657 1.461 2.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.488 4.488 8 H 0.112 0.888 9 C 0.046 3.954 10 C -0.160 4.160 11 C -0.236 4.236 12 S 0.309 5.691 13 C -0.362 4.362 14 C -0.132 4.132 15 C -0.155 4.155 16 C -0.192 4.192 17 C 0.256 3.744 18 O -0.365 6.365 19 C 0.057 3.943 20 F -0.114 7.114 21 H 0.109 0.891 22 H 0.137 0.863 23 H 0.207 0.793 24 H 0.164 0.836 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.789 -1.180 2.423 2.809 hybrid contribution 1.221 0.010 -1.036 1.602 sum 0.432 -1.171 1.387 1.866 Atomic orbital electron populations 1.69844 1.09210 1.31825 1.31817 1.26850 0.95520 1.04879 0.90968 0.85071 0.79175 0.75028 0.79871 1.18366 1.18844 1.17779 1.19847 0.98834 0.91564 1.38604 0.88823 1.17611 0.93712 0.91790 0.92292 1.20315 0.99273 0.95522 1.00872 1.22696 1.00556 0.97120 1.03224 1.83578 1.29610 1.04019 1.51905 1.25315 1.05373 0.97412 1.08074 1.20010 0.95048 0.99891 0.98218 1.18786 0.99387 0.92145 1.05161 1.21520 0.98895 0.94786 1.03969 1.24061 0.86208 0.85195 0.78924 1.90394 1.56515 1.36942 1.52688 1.18083 0.87719 0.94052 0.94455 1.91356 1.52835 1.97241 1.69934 0.89061 0.86293 0.79294 0.83591 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.14 11.00 21.82 0.24 -37.90 15 2 C 0.04 1.64 5.10 85.23 0.43 2.07 15 3 Si 0.99 34.02 29.59 68.60 2.03 36.05 15 4 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 5 H -0.26 -8.68 7.11 99.48 0.71 -7.97 15 6 H -0.25 -8.58 7.11 99.48 0.71 -7.88 15 7 C -0.46 -22.35 8.72 23.36 0.20 -22.14 15 8 H 0.09 4.34 7.72 -2.91 -0.02 4.32 15 9 C 0.05 2.62 5.55 -21.42 -0.12 2.50 15 10 C -0.13 -6.68 8.63 22.88 0.20 -6.49 15 11 C -0.12 -5.62 6.45 22.89 0.15 -5.47 15 12 S 0.05 1.83 23.30 -56.49 -1.32 0.51 15 13 C -0.23 -7.98 11.11 66.64 0.74 -7.24 15 14 C -0.10 -4.07 9.43 21.47 0.20 -3.87 15 15 C -0.15 -6.65 6.03 -19.89 -0.12 -6.77 15 16 C -0.19 -8.10 6.06 -18.51 -0.11 -8.21 15 17 C 0.39 14.24 11.22 69.95 0.78 15.02 15 18 O -0.49 -19.19 15.22 -3.23 -0.05 -19.24 15 19 C 0.08 3.55 7.26 23.08 0.17 3.71 15 20 F -0.14 -5.62 15.97 44.97 0.72 -4.90 15 21 H 0.30 12.66 8.30 -92.71 -0.77 11.89 15 22 H 0.12 6.12 6.15 -2.91 -0.02 6.11 15 23 H 0.19 5.03 8.06 -2.91 -0.02 5.01 15 24 H 0.15 5.61 6.21 -2.91 -0.02 5.59 15 25 H 0.14 3.87 7.70 -2.91 -0.02 3.85 15 Total: -1.00 -54.73 246.10 5.40 -49.34 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.25 Total: 13.02 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 2.53 Total: -36.87 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.24 Total: -37.90 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.72 Total: -4.90 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 2.03 Total: 36.05 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.32 Total: 0.51 kcal Total: -54.73 5.40 -49.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396306413.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.249 kcal (2) G-P(sol) polarization free energy of solvation -54.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds