Wall clock time and date at job start Mon Mar 30 2020 06:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31035 * 1 3 3 Si 1.86805 * 119.99617 * 2 1 4 4 H 1.48499 * 109.46773 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47197 * 299.99762 * 3 2 1 6 6 H 1.48500 * 109.47026 * 59.99946 * 3 2 1 7 7 C 1.39760 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99865 * 190.80458 * 7 2 1 9 9 C 1.40774 * 120.00439 * 10.80539 * 7 2 1 10 10 C 1.36411 * 123.29113 * 23.02386 * 9 7 2 11 11 S 1.69985 * 111.92916 * 179.73588 * 10 9 7 12 12 C 1.75761 * 93.22174 * 0.26844 * 11 10 9 13 13 C 1.39194 * 110.22838 * 359.97438 * 12 11 10 14 14 C 1.40735 * 119.31053 * 180.02562 * 13 12 11 15 15 F 1.35108 * 119.66273 * 179.97438 * 14 13 12 16 16 C 1.38187 * 120.67497 * 359.95342 * 14 13 12 17 17 C 1.37845 * 120.49845 * 0.05055 * 16 14 13 18 18 C 1.39653 * 120.01134 * 359.97008 * 17 16 14 19 19 C 1.46567 * 120.00070 * 180.02562 * 18 17 16 20 20 O 1.21336 * 119.99891 * 179.97438 * 19 18 17 21 21 H 0.96993 * 120.00629 * 359.97438 * 1 2 3 22 22 H 1.07992 * 124.03517 * 0.02562 * 10 9 7 23 23 H 1.07994 * 119.74962 * 180.02562 * 16 14 13 24 24 H 1.07991 * 119.99135 * 179.97438 * 17 16 14 25 25 H 1.07999 * 119.99887 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 3.7043 1.3465 -0.0006 5 1 1.8855 2.3965 -1.2125 6 1 1.8854 2.3965 1.2125 7 6 2.0092 -1.2103 -0.0005 8 1 3.0749 -1.2186 0.1748 9 6 1.3242 -2.4186 -0.2296 10 6 0.1314 -2.4900 -0.8877 11 16 -0.4327 -4.0890 -1.0077 12 6 0.9501 -4.7467 -0.1449 13 6 1.8210 -3.7237 0.2193 14 6 2.9984 -4.0392 0.9228 15 9 3.8491 -3.0519 1.2794 16 6 3.2931 -5.3483 1.2529 17 6 2.4378 -6.3690 0.8972 18 6 1.2628 -6.0841 0.1983 19 6 0.3532 -7.1696 -0.1794 20 8 -0.6679 -6.9219 -0.7861 21 1 -0.4851 0.8399 0.0004 22 1 -0.3898 -1.6335 -1.2888 23 1 4.2006 -5.5733 1.7934 24 1 2.6764 -7.3892 1.1590 25 1 0.5919 -8.1898 0.0825 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396307160.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:12 Heat of formation + Delta-G solvation = -65.279403 kcal Electronic energy + Delta-G solvation = -15311.732668 eV Core-core repulsion = 12488.099647 eV Total energy + Delta-G solvation = -2823.633022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.85171 -40.54381 -39.11629 -36.82096 -34.28191 -31.70591 -30.18707 -28.04501 -25.46097 -24.33536 -22.13376 -21.48082 -19.22285 -18.62657 -17.70498 -17.45042 -16.64798 -16.56772 -16.08365 -15.90800 -15.38376 -15.20910 -14.88722 -14.10004 -13.88248 -13.74839 -13.25530 -13.15134 -12.81558 -12.73718 -12.14895 -11.99400 -11.73582 -11.34979 -11.11506 -10.51487 -10.10314 -9.31759 -8.69065 -8.56742 -6.37959 -0.46568 0.14793 1.04143 1.16855 1.31607 1.43264 1.47757 1.88885 1.97477 2.17892 2.69633 3.23142 3.33747 3.52498 3.90178 3.97204 4.34665 4.59187 4.64136 5.05330 5.07687 5.16658 5.18177 5.20136 5.59270 5.88248 5.95223 6.40949 6.65844 6.74617 6.85269 8.33409 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.028160 B = 0.008751 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.079577 B = 3198.740309 C = 4137.914911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.023 3.977 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.467 4.467 8 H 0.077 0.923 9 C 0.057 3.943 10 C -0.410 4.410 11 S 0.121 5.879 12 C -0.101 4.101 13 C -0.160 4.160 14 C 0.149 3.851 15 F -0.142 7.142 16 C -0.182 4.182 17 C 0.002 3.998 18 C -0.206 4.206 19 C 0.384 3.616 20 O -0.503 6.503 21 H 0.284 0.716 22 H 0.136 0.864 23 H 0.179 0.821 24 H 0.210 0.790 25 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -11.889 3.198 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.095 0.905 9 C 0.048 3.952 10 C -0.546 4.546 11 S 0.387 5.613 12 C -0.218 4.218 13 C -0.171 4.171 14 C 0.128 3.872 15 F -0.120 7.120 16 C -0.205 4.205 17 C -0.018 4.018 18 C -0.214 4.214 19 C 0.246 3.754 20 O -0.379 6.379 21 H 0.095 0.905 22 H 0.154 0.846 23 H 0.196 0.804 24 H 0.227 0.773 25 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.169 -12.025 2.191 12.915 hybrid contribution 1.386 2.573 0.565 2.976 sum 5.555 -9.453 2.756 11.305 Atomic orbital electron populations 1.69951 1.08913 1.29864 1.37189 1.26784 0.95668 1.04591 0.91967 0.85068 0.79226 0.75915 0.78972 1.18065 1.18910 1.18851 1.19426 0.95910 0.90992 1.43644 0.90451 1.17718 0.93433 0.91165 0.92862 1.24524 1.08178 0.99992 1.21858 1.82199 1.22385 0.97941 1.58824 1.23157 0.98869 0.97017 1.02801 1.19839 0.97169 0.94919 1.05155 1.18392 0.86337 0.86532 0.95915 1.91432 1.68856 1.62438 1.89291 1.21236 1.04389 0.88572 1.06261 1.21634 0.88623 1.01344 0.90199 1.20925 1.01261 0.91621 1.07570 1.24753 0.81917 0.94981 0.73784 1.90544 1.26813 1.87777 1.32795 0.90540 0.84610 0.80380 0.77298 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.02 10.81 21.80 0.24 -46.78 15 2 C 0.02 1.23 5.36 85.18 0.46 1.69 15 3 Si 0.99 41.11 29.57 68.60 2.03 43.14 15 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 5 H -0.26 -10.53 7.11 99.48 0.71 -9.83 15 6 H -0.26 -10.43 7.11 99.48 0.71 -9.73 15 7 C -0.47 -26.90 8.76 23.26 0.20 -26.70 15 8 H 0.08 4.34 6.52 -2.91 -0.02 4.32 15 9 C 0.06 3.27 5.68 -20.88 -0.12 3.15 15 10 C -0.41 -23.55 9.50 67.39 0.64 -22.91 15 11 S 0.12 5.89 21.06 -56.49 -1.19 4.70 15 12 C -0.10 -4.47 6.31 23.32 0.15 -4.32 15 13 C -0.16 -7.87 6.03 -20.23 -0.12 -7.99 15 14 C 0.15 6.07 7.35 22.87 0.17 6.24 15 15 F -0.14 -6.12 15.40 44.97 0.69 -5.42 15 16 C -0.18 -4.91 9.96 22.16 0.22 -4.69 15 17 C 0.00 0.03 9.76 22.52 0.22 0.25 15 18 C -0.21 -6.36 5.90 -19.94 -0.12 -6.48 15 19 C 0.38 9.63 11.42 69.99 0.80 10.43 15 20 O -0.50 -17.88 15.77 -3.20 -0.05 -17.93 15 21 H 0.28 14.52 8.30 -92.71 -0.77 13.75 15 22 H 0.14 8.37 6.29 -2.91 -0.02 8.35 15 23 H 0.18 3.24 8.06 -2.91 -0.02 3.22 15 24 H 0.21 1.53 8.06 -2.92 -0.02 1.51 15 25 H 0.18 1.82 8.06 -2.91 -0.02 1.79 15 Total: -1.00 -75.41 245.25 5.46 -69.95 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.24 Total: 3.67 kcal Atomic # 6 Polarization: -53.82 SS G_CDS: 2.50 Total: -51.32 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.24 Total: -46.78 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.05 Total: -17.93 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.69 Total: -5.42 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 5.89 SS G_CDS: -1.19 Total: 4.70 kcal Total: -75.41 5.46 -69.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307160.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.668 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds