Wall clock time and date at job start Mon Mar 30 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31070 * 1 3 3 Si 1.86799 * 120.00246 * 2 1 4 4 H 1.48500 * 109.47097 * 270.00118 * 3 2 1 5 5 H 1.48504 * 109.47209 * 29.99919 * 3 2 1 6 6 H 1.48496 * 109.47573 * 149.99864 * 3 2 1 7 7 C 1.39713 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00297 * 171.94488 * 7 2 1 9 9 C 1.40949 * 119.99658 * 351.93292 * 7 2 1 10 10 C 1.36677 * 123.29886 * 320.15723 * 9 7 2 11 11 S 1.69990 * 111.84952 * 180.02562 * 10 9 7 12 12 C 1.75837 * 93.19344 * 359.97438 * 11 10 9 13 13 C 1.39913 * 130.06576 * 180.02562 * 12 11 10 14 14 C 1.37739 * 120.86029 * 179.97438 * 13 12 11 15 15 C 1.38457 * 120.40155 * 359.97438 * 14 13 12 16 16 F 1.35097 * 120.01298 * 179.75082 * 15 14 13 17 17 C 1.39566 * 119.96941 * 0.02562 * 15 14 13 18 18 C 1.46542 * 120.06279 * 179.97438 * 17 15 14 19 19 O 1.21332 * 120.00282 * 354.17180 * 18 17 15 20 20 C 1.39118 * 110.16809 * 0.02562 * 12 11 10 21 21 H 0.97000 * 119.99492 * 0.02562 * 1 2 3 22 22 H 1.07998 * 124.07141 * 359.97438 * 10 9 7 23 23 H 1.08002 * 119.56872 * 359.95023 * 13 12 11 24 24 H 1.08002 * 119.79816 * 180.02562 * 14 13 12 25 25 H 1.07998 * 119.99937 * 174.17049 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.4923 2.0464 -1.4001 5 1 1.4422 2.6527 0.7000 6 1 3.5423 1.4402 0.7000 7 6 2.0093 -1.2099 -0.0005 8 1 3.0813 -1.2145 -0.1316 9 6 1.3149 -2.4246 0.1702 10 6 0.2784 -2.5795 1.0475 11 16 -0.3449 -4.1607 1.0176 12 6 0.7951 -4.6921 -0.2112 13 6 0.9466 -5.9436 -0.8181 14 6 1.9167 -6.1528 -1.7733 15 6 2.7617 -5.1231 -2.1511 16 9 3.7137 -5.3383 -3.0851 17 6 2.6332 -3.8642 -1.5623 18 6 3.5268 -2.7730 -1.9602 19 8 4.4458 -2.9888 -2.7224 20 6 1.6332 -3.6426 -0.5739 21 1 -0.4849 0.8401 -0.0004 22 1 -0.0985 -1.7924 1.6837 23 1 0.2947 -6.7563 -0.5335 24 1 2.0183 -7.1258 -2.2310 25 1 3.3673 -1.7768 -1.5750 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396307813.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:03 Heat of formation + Delta-G solvation = -44.387778 kcal Electronic energy + Delta-G solvation = -15424.944358 eV Core-core repulsion = 12602.217265 eV Total energy + Delta-G solvation = -2822.727093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.40625 -39.10721 -37.58037 -35.05176 -32.42154 -30.63444 -28.53358 -26.46880 -23.83454 -22.71906 -20.78288 -19.92074 -17.58178 -16.68526 -16.46247 -15.80871 -15.21419 -15.18153 -14.84202 -14.10973 -13.79369 -13.38710 -13.35797 -12.67198 -12.52467 -12.30622 -11.67301 -11.54811 -11.24640 -10.89913 -10.84408 -10.38608 -10.03617 -9.76564 -9.33757 -8.89256 -8.75783 -7.65840 -6.88573 -6.76048 -4.54531 0.93997 1.51223 2.49803 2.90757 2.96961 3.05448 3.09382 3.41393 3.46478 3.90656 4.24328 4.59521 4.91678 5.01323 5.10920 5.48793 5.67390 6.03992 6.05007 6.34817 6.44573 6.52234 6.65613 7.05690 7.14970 7.36693 7.65112 8.06444 8.17017 8.52516 8.71658 10.20998 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.010493 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.168473 B = 2667.834422 C = 3951.947669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.081 3.919 10 C -0.305 4.305 11 S 0.065 5.935 12 C -0.177 4.177 13 C -0.028 4.028 14 C -0.180 4.180 15 C 0.138 3.862 16 F -0.128 7.128 17 C -0.188 4.188 18 C 0.368 3.632 19 O -0.479 6.479 20 C 0.008 3.992 21 H 0.280 0.720 22 H 0.152 0.848 23 H 0.129 0.871 24 H 0.135 0.865 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -5.671 0.465 5.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.501 4.501 8 H 0.102 0.898 9 C 0.072 3.928 10 C -0.441 4.441 11 S 0.329 5.671 12 C -0.292 4.292 13 C -0.051 4.051 14 C -0.202 4.202 15 C 0.115 3.885 16 F -0.106 7.106 17 C -0.192 4.192 18 C 0.230 3.770 19 O -0.355 6.355 20 C -0.004 4.004 21 H 0.090 0.910 22 H 0.170 0.830 23 H 0.147 0.853 24 H 0.153 0.847 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.190 -6.234 0.887 6.408 hybrid contribution 1.291 1.518 -0.894 2.184 sum 0.101 -4.715 -0.007 4.717 Atomic orbital electron populations 1.69837 1.07155 1.29045 1.37383 1.25704 0.94895 1.00707 0.92591 0.86332 0.80449 0.80817 0.79404 1.19343 1.20129 1.18396 1.18904 0.94719 0.89385 1.47067 0.89812 1.17222 0.94582 0.90267 0.90703 1.24424 1.10694 0.98256 1.10743 1.82017 1.37340 1.07372 1.40332 1.22682 1.03663 0.97428 1.05455 1.20419 0.96161 0.94800 0.93685 1.20688 0.98529 0.98808 1.02153 1.17693 0.88193 0.93520 0.89074 1.91510 1.61627 1.95126 1.62323 1.20722 1.01915 0.94705 1.01812 1.24972 0.80104 0.94889 0.77061 1.90472 1.28779 1.87313 1.28919 1.19793 0.92324 0.94610 0.93643 0.90982 0.83023 0.85333 0.84729 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.91 11.80 55.54 0.66 -19.25 15 2 C 0.08 1.82 5.36 -17.33 -0.09 1.73 15 3 Si 0.91 17.87 29.57 -169.99 -5.03 12.85 15 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 7 C -0.47 -11.19 7.40 -38.01 -0.28 -11.47 15 8 H 0.08 1.89 5.80 -52.49 -0.30 1.59 15 9 C 0.08 1.95 5.46 -106.22 -0.58 1.37 15 10 C -0.31 -7.09 9.47 30.17 0.29 -6.80 15 11 S 0.07 1.27 22.97 -107.50 -2.47 -1.20 15 12 C -0.18 -3.51 6.43 -38.63 -0.25 -3.76 15 13 C -0.03 -0.45 10.05 -39.14 -0.39 -0.85 15 14 C -0.18 -2.94 9.98 -39.68 -0.40 -3.34 15 15 C 0.14 2.69 7.27 -39.01 -0.28 2.40 15 16 F -0.13 -2.54 15.52 2.25 0.03 -2.51 15 17 C -0.19 -3.99 5.92 -104.48 -0.62 -4.61 15 18 C 0.37 7.85 10.85 34.08 0.37 8.22 15 19 O -0.48 -10.91 16.14 5.51 0.09 -10.82 15 20 C 0.01 0.18 6.02 -104.78 -0.63 -0.45 15 21 H 0.28 6.38 8.30 -40.82 -0.34 6.04 15 22 H 0.15 3.69 7.43 -52.49 -0.39 3.30 15 23 H 0.13 1.66 8.06 -52.49 -0.42 1.24 15 24 H 0.13 1.74 8.06 -52.49 -0.42 1.31 15 25 H 0.14 2.89 4.38 -52.49 -0.23 2.66 15 LS Contribution 243.55 15.07 3.67 3.67 Total: -1.00 -26.42 243.55 -6.82 -33.24 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -0.90 Total: 1.59 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.87 Total: -17.57 kcal Atomic # 7 Polarization: -19.91 SS G_CDS: 0.66 Total: -19.25 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.03 Total: -2.51 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.47 Total: -1.20 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.42 -6.82 -33.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307813.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.145 kcal (2) G-P(sol) polarization free energy of solvation -26.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds