Wall clock time and date at job start Mon Mar 30 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86810 * 119.99464 * 2 1 4 4 H 1.48497 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46695 * 300.00018 * 3 2 1 6 6 H 1.48497 * 109.47265 * 59.99927 * 3 2 1 7 7 C 1.39841 * 120.00553 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99575 * 162.49379 * 7 2 1 9 9 C 1.41371 * 119.99942 * 342.49884 * 7 2 1 10 10 C 1.40087 * 119.94184 * 334.16795 * 9 7 2 11 11 C 1.40382 * 120.54742 * 180.27941 * 10 9 7 12 12 C 1.45683 * 129.02460 * 179.97438 * 11 10 9 13 13 C 1.31930 * 114.85249 * 180.02562 * 12 11 10 14 14 F 1.35100 * 124.25659 * 180.02562 * 13 12 11 15 15 S 1.75256 * 111.48913 * 359.97438 * 13 12 11 16 16 C 1.40108 * 119.24228 * 359.97438 * 11 10 9 17 17 C 1.41869 * 120.07023 * 359.97438 * 16 11 10 18 18 C 1.46838 * 119.86571 * 179.97438 * 17 16 11 19 19 O 1.21306 * 120.00117 * 0.02562 * 18 17 16 20 20 C 1.38713 * 120.27349 * 0.02562 * 17 16 11 21 21 H 0.96996 * 120.00273 * 359.97438 * 1 2 3 22 22 H 1.07998 * 119.72749 * 0.25582 * 10 9 7 23 23 H 1.08000 * 122.57106 * 359.97438 * 12 11 10 24 24 H 1.07999 * 120.00466 * 180.02562 * 18 17 16 25 25 H 1.07994 * 120.12311 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6179 0.0000 4 1 3.7029 1.3466 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8841 2.3966 1.2125 7 6 2.0084 -1.2110 0.0005 8 1 3.0508 -1.2326 -0.2808 9 6 1.3507 -2.4069 0.3693 10 6 0.2388 -2.3596 1.2201 11 6 -0.4203 -3.5397 1.5990 12 6 -1.5802 -3.7051 2.4649 13 6 -1.9723 -4.9533 2.6342 14 9 -3.0246 -5.3231 3.3964 15 16 -0.9572 -6.0714 1.7448 16 6 0.0460 -4.7695 1.1160 17 6 1.1717 -4.8138 0.2536 18 6 1.6569 -6.1051 -0.2496 19 8 1.0953 -7.1311 0.0719 20 6 1.8164 -3.6423 -0.1153 21 1 -0.4850 0.8400 0.0004 22 1 -0.1141 -1.4074 1.5878 23 1 -2.0801 -2.8700 2.9330 24 1 2.5139 -6.1414 -0.9058 25 1 2.6728 -3.6788 -0.7722 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396307887.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:56 Heat of formation + Delta-G solvation = -57.456530 kcal Electronic energy + Delta-G solvation = -15012.416548 eV Core-core repulsion = 12189.122752 eV Total energy + Delta-G solvation = -2823.293796 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.05642 -40.46583 -39.16885 -36.51774 -34.86250 -31.79268 -30.18730 -27.35574 -25.57000 -23.97228 -22.06638 -21.80539 -19.03470 -19.02558 -17.31560 -17.23654 -17.02169 -16.88928 -16.48114 -16.05841 -15.24149 -15.14998 -14.80036 -14.47423 -14.01122 -13.81607 -13.29376 -12.90845 -12.84418 -12.40119 -12.10984 -11.81223 -11.67698 -11.59937 -10.97109 -10.56840 -10.23730 -9.27907 -8.71722 -8.68397 -6.36257 -0.23837 0.11869 0.30797 1.10063 1.11353 1.45618 1.53030 1.59600 1.87982 2.21906 2.65444 3.25679 3.48801 3.55023 4.18879 4.28669 4.52025 4.63892 4.76726 4.86658 5.05263 5.23501 5.29868 5.42753 5.61628 5.92086 5.99229 6.49458 6.55824 6.80337 6.83294 8.28361 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026214 B = 0.007458 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.894978 B = 3753.706737 C = 4739.824651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.477 4.477 8 H 0.097 0.903 9 C 0.066 3.934 10 C -0.130 4.130 11 C -0.067 4.067 12 C -0.154 4.154 13 C -0.021 4.021 14 F -0.111 7.111 15 S 0.107 5.893 16 C -0.209 4.209 17 C -0.152 4.152 18 C 0.387 3.613 19 O -0.500 6.500 20 C -0.109 4.109 21 H 0.290 0.710 22 H 0.113 0.887 23 H 0.155 0.845 24 H 0.158 0.842 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -2.187 0.127 3.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.506 4.506 8 H 0.115 0.885 9 C 0.062 3.938 10 C -0.152 4.152 11 C -0.073 4.073 12 C -0.187 4.187 13 C -0.153 4.153 14 F -0.090 7.090 15 S 0.365 5.635 16 C -0.324 4.324 17 C -0.158 4.158 18 C 0.249 3.751 19 O -0.376 6.376 20 C -0.129 4.129 21 H 0.101 0.899 22 H 0.130 0.870 23 H 0.173 0.827 24 H 0.174 0.826 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.153 -4.155 0.198 4.684 hybrid contribution -0.452 2.514 0.475 2.598 sum 1.701 -1.641 0.673 2.457 Atomic orbital electron populations 1.69876 1.09157 1.30898 1.34904 1.26750 0.95348 1.04707 0.91205 0.85150 0.79860 0.76239 0.78526 1.17356 1.19528 1.19654 1.19907 0.98836 0.91338 1.40497 0.88484 1.17727 0.92065 0.93728 0.90285 1.21271 0.99257 0.94852 0.99844 1.18823 0.95744 0.93799 0.98964 1.21278 0.98636 0.96535 1.02268 1.21750 0.93439 0.97700 1.02453 1.91447 1.53059 1.91644 1.72867 1.84209 1.25046 1.06050 1.48168 1.22384 1.04510 0.94839 1.10707 1.20284 0.96767 0.97260 1.01449 1.24690 0.86472 0.85083 0.78829 1.90442 1.57045 1.37407 1.52756 1.21774 1.00928 0.90288 0.99929 0.89919 0.86961 0.82714 0.82570 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.16 11.00 21.81 0.24 -38.92 15 2 C 0.04 1.59 5.12 85.22 0.44 2.03 15 3 Si 0.98 33.81 29.59 68.60 2.03 35.84 15 4 H -0.25 -8.22 7.11 99.48 0.71 -7.52 15 5 H -0.27 -9.12 7.11 99.48 0.71 -8.41 15 6 H -0.27 -9.31 7.11 99.48 0.71 -8.61 15 7 C -0.48 -21.73 9.02 23.43 0.21 -21.51 15 8 H 0.10 4.06 7.90 -2.91 -0.02 4.03 15 9 C 0.07 3.05 5.54 -21.47 -0.12 2.93 15 10 C -0.13 -6.30 8.73 23.24 0.20 -6.09 15 11 C -0.07 -3.10 6.02 -20.38 -0.12 -3.22 15 12 C -0.15 -6.37 10.40 23.33 0.24 -6.12 15 13 C -0.02 -0.83 8.17 66.96 0.55 -0.28 15 14 F -0.11 -4.07 17.32 44.97 0.78 -3.29 15 15 S 0.11 4.29 21.33 -56.49 -1.20 3.09 15 16 C -0.21 -9.14 6.36 23.62 0.15 -8.99 15 17 C -0.15 -5.95 5.88 -20.02 -0.12 -6.07 15 18 C 0.39 12.32 11.42 70.07 0.80 13.12 15 19 O -0.50 -18.86 15.76 -3.11 -0.05 -18.91 15 20 C -0.11 -4.26 9.48 22.97 0.22 -4.04 15 21 H 0.29 12.56 8.30 -92.71 -0.77 11.80 15 22 H 0.11 5.70 6.16 -2.91 -0.02 5.69 15 23 H 0.16 5.75 8.06 -2.91 -0.02 5.72 15 24 H 0.16 3.20 8.06 -2.91 -0.02 3.17 15 25 H 0.15 4.78 8.06 -2.91 -0.02 4.76 15 Total: -1.00 -55.29 249.01 5.48 -49.80 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.24 Total: 10.63 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 2.45 Total: -38.24 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.24 Total: -38.92 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 33.81 SS G_CDS: 2.03 Total: 35.84 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.20 Total: 3.09 kcal Total: -55.29 5.48 -49.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307887.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.655 kcal (2) G-P(sol) polarization free energy of solvation -55.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds