Wall clock time and date at job start Mon Mar 30 2020 06:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30769 * 1 3 3 Si 1.86806 * 119.99613 * 2 1 4 4 H 1.48498 * 109.47053 * 269.99886 * 3 2 1 5 5 H 1.48498 * 109.47049 * 29.99920 * 3 2 1 6 6 H 1.48499 * 109.47034 * 150.00225 * 3 2 1 7 7 C 1.40179 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.39877 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.36922 * 124.83042 * 180.02562 * 9 7 2 11 11 C 1.39842 * 115.04250 * 179.97438 * 10 9 7 12 12 C 1.41946 * 128.39638 * 180.02562 * 11 10 9 13 13 C 1.37067 * 120.84555 * 179.97438 * 12 11 10 14 14 C 1.38745 * 120.75811 * 0.25618 * 13 12 11 15 15 F 1.35099 * 120.02374 * 179.72026 * 14 13 12 16 16 C 1.39901 * 119.94654 * 359.48941 * 14 13 12 17 17 C 1.46488 * 120.02700 * 180.27839 * 16 14 13 18 18 O 1.21343 * 119.99545 * 180.23028 * 17 16 14 19 19 C 1.40259 * 112.85176 * 359.97438 * 11 10 9 20 20 S 1.75459 * 124.83741 * 359.97438 * 9 7 2 21 21 H 0.96994 * 120.00179 * 359.97438 * 1 2 3 22 22 H 1.08003 * 122.47506 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.57970 * 0.02562 * 12 11 10 24 24 H 1.08002 * 119.61735 * 179.97438 * 13 12 11 25 25 H 1.07994 * 119.99920 * 0.22383 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4891 2.0465 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5392 1.4403 0.7000 7 6 2.0087 -1.2139 -0.0005 8 1 3.0886 -1.2139 -0.0010 9 6 1.3093 -2.4253 -0.0005 10 6 1.8916 -3.6645 -0.0005 11 6 0.9967 -4.7391 0.0000 12 6 1.2873 -6.1285 0.0007 13 6 0.2793 -7.0573 0.0017 14 6 -1.0504 -6.6614 -0.0032 15 9 -2.0321 -7.5896 -0.0078 16 6 -1.3738 -5.3003 0.0015 17 6 -2.7772 -4.8803 0.0026 18 8 -3.0571 -3.6996 0.0024 19 6 -0.3451 -4.3305 0.0011 20 16 -0.4391 -2.5733 0.0007 21 1 -0.4850 0.8400 0.0004 22 1 2.9628 -3.8019 -0.0001 23 1 2.3158 -6.4580 0.0012 24 1 0.5231 -8.1095 0.0018 25 1 -3.5627 -5.6215 0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396307895.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:19 Heat of formation + Delta-G solvation = -63.150799 kcal Electronic energy + Delta-G solvation = -15079.088423 eV Core-core repulsion = 12255.547704 eV Total energy + Delta-G solvation = -2823.540718 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.25022 -38.76177 -37.50815 -34.98835 -33.06846 -30.52826 -29.00915 -25.40973 -24.33742 -22.27415 -20.58229 -19.41986 -18.00047 -17.11021 -16.26986 -15.42731 -15.15600 -15.02201 -14.49832 -14.25563 -13.61882 -13.49439 -13.30711 -12.53120 -12.44217 -12.26511 -11.61765 -11.55888 -11.36668 -11.03299 -10.55888 -10.37874 -10.14817 -9.46336 -9.41211 -8.78906 -8.69372 -7.50785 -7.28425 -6.59710 -4.79155 1.15661 2.03210 2.61688 2.79225 2.85960 2.97250 3.09495 3.50916 3.52110 3.76822 4.41767 4.81805 4.88270 5.02653 5.49269 5.63028 6.01234 6.27060 6.39320 6.54662 6.62814 6.85799 6.96642 7.14743 7.31565 7.56759 7.70435 7.83758 7.97902 8.14920 8.28083 9.54355 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.038592 B = 0.007168 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.360192 B = 3905.418602 C = 4620.933162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.050 3.950 3 Si 0.941 3.059 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.373 4.373 8 H 0.101 0.899 9 C 0.029 3.971 10 C -0.363 4.363 11 C 0.000 4.000 12 C -0.101 4.101 13 C -0.152 4.152 14 C 0.059 3.941 15 F -0.152 7.152 16 C -0.162 4.162 17 C 0.371 3.629 18 O -0.451 6.451 19 C -0.204 4.204 20 S 0.216 5.784 21 H 0.305 0.695 22 H 0.109 0.891 23 H 0.116 0.884 24 H 0.120 0.880 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 -3.333 0.000 3.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.406 4.406 8 H 0.119 0.881 9 C -0.091 4.091 10 C -0.387 4.387 11 C -0.008 4.008 12 C -0.121 4.121 13 C -0.174 4.174 14 C 0.038 3.962 15 F -0.131 7.131 16 C -0.170 4.170 17 C 0.230 3.770 18 O -0.325 6.325 19 C -0.320 4.320 20 S 0.478 5.522 21 H 0.119 0.881 22 H 0.127 0.873 23 H 0.134 0.866 24 H 0.138 0.862 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.541 -1.495 0.004 2.147 hybrid contribution 1.499 -0.862 -0.006 1.729 sum -0.042 -2.357 -0.001 2.357 Atomic orbital electron populations 1.68570 1.07842 1.31564 1.31448 1.26414 0.95150 1.03271 0.92384 0.85709 0.80070 0.77969 0.79892 1.18646 1.19420 1.17895 1.19385 0.95834 0.88532 1.36845 0.88145 1.21845 0.96930 0.95992 0.94296 1.19548 0.97840 0.89827 1.31527 1.18079 0.91816 0.93307 0.97633 1.20812 0.97866 0.91316 1.02139 1.20391 0.90903 0.99499 1.06565 1.17306 0.84895 0.84373 1.09606 1.91368 1.61894 1.65124 1.94693 1.19858 0.95334 0.91225 1.10555 1.23713 0.90706 0.91104 0.71462 1.90522 1.85801 1.21390 1.34824 1.23994 0.94999 1.03269 1.09737 1.85686 1.01871 0.89230 1.75380 0.88108 0.87266 0.86591 0.86164 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.95 10.58 55.56 0.59 -17.36 15 2 C 0.05 1.12 5.50 -17.28 -0.10 1.03 15 3 Si 0.94 16.47 29.56 -169.99 -5.03 11.45 15 4 H -0.26 -4.53 7.11 56.52 0.40 -4.12 15 5 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 6 H -0.26 -4.39 7.11 56.52 0.40 -3.99 15 7 C -0.37 -8.96 9.26 -38.24 -0.35 -9.32 15 8 H 0.10 2.25 7.85 -52.49 -0.41 1.84 15 9 C 0.03 0.73 6.11 -39.45 -0.24 0.49 15 10 C -0.36 -8.88 10.14 -39.46 -0.40 -9.28 15 11 C 0.00 0.00 5.85 -107.12 -0.63 -0.63 15 12 C -0.10 -2.00 10.06 -38.59 -0.39 -2.39 15 13 C -0.15 -2.79 9.95 -39.82 -0.40 -3.19 15 14 C 0.06 1.15 7.30 -38.77 -0.28 0.87 15 15 F -0.15 -2.66 16.58 2.25 0.04 -2.62 15 16 C -0.16 -3.48 5.90 -104.76 -0.62 -4.10 15 17 C 0.37 7.24 11.22 34.05 0.38 7.63 15 18 O -0.45 -10.14 15.76 5.50 0.09 -10.06 15 19 C -0.20 -4.90 6.34 -37.63 -0.24 -5.14 15 20 S 0.22 5.45 18.22 -107.50 -1.96 3.49 15 21 H 0.31 6.37 8.29 -40.82 -0.34 6.03 15 22 H 0.11 2.51 8.06 -52.48 -0.42 2.08 15 23 H 0.12 1.99 8.06 -52.49 -0.42 1.56 15 24 H 0.12 1.81 8.06 -52.49 -0.42 1.39 15 25 H 0.10 1.44 7.71 -52.49 -0.40 1.04 15 LS Contribution 247.68 15.07 3.73 3.73 Total: -1.00 -26.76 247.68 -7.02 -33.78 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -1.22 Total: 1.62 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -3.26 Total: -24.03 kcal Atomic # 7 Polarization: -17.95 SS G_CDS: 0.59 Total: -17.36 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.45 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.96 Total: 3.49 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -26.76 -7.02 -33.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307895.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.372 kcal (2) G-P(sol) polarization free energy of solvation -26.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds