Wall clock time and date at job start Mon Mar 30 2020 06:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30769 * 1 3 3 Si 1.86806 * 119.99613 * 2 1 4 4 H 1.48498 * 109.47053 * 269.99886 * 3 2 1 5 5 H 1.48498 * 109.47049 * 29.99920 * 3 2 1 6 6 H 1.48499 * 109.47034 * 150.00225 * 3 2 1 7 7 C 1.40179 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.39877 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.36922 * 124.83042 * 180.02562 * 9 7 2 11 11 C 1.39842 * 115.04250 * 179.97438 * 10 9 7 12 12 C 1.41946 * 128.39638 * 180.02562 * 11 10 9 13 13 C 1.37067 * 120.84555 * 179.97438 * 12 11 10 14 14 C 1.38745 * 120.75811 * 0.25618 * 13 12 11 15 15 F 1.35099 * 120.02374 * 179.72026 * 14 13 12 16 16 C 1.39901 * 119.94654 * 359.48941 * 14 13 12 17 17 C 1.46488 * 120.02700 * 180.27839 * 16 14 13 18 18 O 1.21343 * 119.99545 * 180.23028 * 17 16 14 19 19 C 1.40259 * 112.85176 * 359.97438 * 11 10 9 20 20 S 1.75459 * 124.83741 * 359.97438 * 9 7 2 21 21 H 0.96994 * 120.00179 * 359.97438 * 1 2 3 22 22 H 1.08003 * 122.47506 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.57970 * 0.02562 * 12 11 10 24 24 H 1.08002 * 119.61735 * 179.97438 * 13 12 11 25 25 H 1.07994 * 119.99920 * 0.22383 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4891 2.0465 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5392 1.4403 0.7000 7 6 2.0087 -1.2139 -0.0005 8 1 3.0886 -1.2139 -0.0010 9 6 1.3093 -2.4253 -0.0005 10 6 1.8916 -3.6645 -0.0005 11 6 0.9967 -4.7391 0.0000 12 6 1.2873 -6.1285 0.0007 13 6 0.2793 -7.0573 0.0017 14 6 -1.0504 -6.6614 -0.0032 15 9 -2.0321 -7.5896 -0.0078 16 6 -1.3738 -5.3003 0.0015 17 6 -2.7772 -4.8803 0.0026 18 8 -3.0571 -3.6996 0.0024 19 6 -0.3451 -4.3305 0.0011 20 16 -0.4391 -2.5733 0.0007 21 1 -0.4850 0.8400 0.0004 22 1 2.9628 -3.8019 -0.0001 23 1 2.3158 -6.4580 0.0012 24 1 0.5231 -8.1095 0.0018 25 1 -3.5627 -5.6215 0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396307895.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:18 Heat of formation + Delta-G solvation = -77.043491 kcal Electronic energy + Delta-G solvation = -15079.690855 eV Core-core repulsion = 12255.547704 eV Total energy + Delta-G solvation = -2824.143151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.76698 -40.39584 -39.17283 -36.69760 -34.76296 -32.14387 -30.73823 -27.12962 -25.96510 -23.94419 -22.20368 -21.12544 -19.73435 -18.70289 -17.90167 -17.03608 -16.74819 -16.54686 -16.19447 -15.82092 -15.19135 -15.14000 -14.90779 -14.17137 -14.00353 -13.99349 -13.18518 -13.12199 -13.04534 -12.67792 -12.01624 -11.93962 -11.84061 -11.19984 -11.05120 -10.48546 -10.37608 -9.24488 -8.94770 -8.44793 -6.59310 -0.45065 0.34989 1.07914 1.29331 1.35064 1.49632 1.53817 1.88517 1.89173 2.11584 2.74245 3.12583 3.32007 3.44499 4.04110 4.09228 4.44400 4.65117 4.79117 4.86405 5.04555 5.20802 5.31903 5.41539 5.57144 5.84319 5.99370 6.12403 6.39373 6.45698 6.49995 7.91251 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.038592 B = 0.007168 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.360192 B = 3905.418602 C = 4620.933162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.014 3.986 3 Si 1.016 2.984 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.249 1.249 7 C -0.406 4.406 8 H 0.108 0.892 9 C 0.003 3.997 10 C -0.385 4.385 11 C -0.025 4.025 12 C -0.091 4.091 13 C -0.144 4.144 14 C 0.084 3.916 15 F -0.134 7.134 16 C -0.187 4.187 17 C 0.375 3.625 18 O -0.487 6.487 19 C -0.230 4.230 20 S 0.167 5.833 21 H 0.313 0.687 22 H 0.114 0.886 23 H 0.147 0.853 24 H 0.166 0.834 25 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 -5.065 0.006 5.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.205 4.205 3 Si 0.833 3.167 4 H -0.180 1.180 5 H -0.185 1.185 6 H -0.172 1.172 7 C -0.438 4.438 8 H 0.126 0.874 9 C -0.116 4.116 10 C -0.409 4.409 11 C -0.033 4.033 12 C -0.111 4.111 13 C -0.165 4.165 14 C 0.063 3.937 15 F -0.113 7.113 16 C -0.194 4.194 17 C 0.236 3.764 18 O -0.363 6.363 19 C -0.346 4.346 20 S 0.429 5.571 21 H 0.127 0.873 22 H 0.132 0.868 23 H 0.164 0.836 24 H 0.184 0.816 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.280 -3.272 0.010 3.513 hybrid contribution 1.332 -0.632 -0.009 1.474 sum 0.052 -3.903 0.001 3.904 Atomic orbital electron populations 1.68659 1.09367 1.32821 1.31786 1.27414 0.95780 1.06329 0.90980 0.84653 0.78728 0.73172 0.80133 1.17973 1.18537 1.17244 1.19732 0.96393 0.89242 1.38468 0.87431 1.22158 0.96852 0.97130 0.95471 1.19744 0.98290 0.90213 1.32693 1.18381 0.91448 0.94907 0.98604 1.21202 1.00074 0.89780 1.00037 1.20866 0.89775 1.01501 1.04358 1.17394 0.85824 0.83770 1.06708 1.91425 1.61360 1.64212 1.94255 1.20237 0.96046 0.91912 1.11209 1.24369 0.90940 0.91342 0.69715 1.90524 1.86030 1.23258 1.36464 1.24085 0.96243 1.02573 1.11747 1.85576 1.02922 0.91838 1.76803 0.87349 0.86781 0.83560 0.81611 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.86 10.58 21.87 0.23 -38.63 15 2 C 0.01 0.63 5.50 85.32 0.47 1.10 15 3 Si 1.02 33.80 29.56 68.60 2.03 35.83 15 4 H -0.26 -8.18 7.11 99.48 0.71 -7.48 15 5 H -0.26 -8.25 7.11 99.48 0.71 -7.55 15 6 H -0.25 -7.96 7.11 99.48 0.71 -7.25 15 7 C -0.41 -20.30 9.26 23.14 0.21 -20.08 15 8 H 0.11 4.99 7.85 -2.91 -0.02 4.97 15 9 C 0.00 0.16 6.11 22.36 0.14 0.30 15 10 C -0.39 -19.41 10.14 22.35 0.23 -19.18 15 11 C -0.03 -1.19 5.85 -21.48 -0.13 -1.32 15 12 C -0.09 -3.36 10.06 22.91 0.23 -3.13 15 13 C -0.14 -4.64 9.95 22.12 0.22 -4.42 15 14 C 0.08 2.97 7.30 22.79 0.17 3.13 15 15 F -0.13 -4.04 16.58 44.97 0.75 -3.29 15 16 C -0.19 -7.76 5.90 -19.95 -0.12 -7.88 15 17 C 0.38 14.15 11.22 69.97 0.78 14.93 15 18 O -0.49 -22.12 15.76 -3.23 -0.05 -22.17 15 19 C -0.23 -11.23 6.34 23.53 0.15 -11.08 15 20 S 0.17 8.85 18.22 -56.49 -1.03 7.82 15 21 H 0.31 13.50 8.29 -92.71 -0.77 12.73 15 22 H 0.11 5.39 8.06 -2.91 -0.02 5.36 15 23 H 0.15 4.47 8.06 -2.91 -0.02 4.44 15 24 H 0.17 3.90 8.06 -2.91 -0.02 3.88 15 25 H 0.15 3.96 7.71 -2.91 -0.02 3.94 15 Total: -1.00 -60.55 247.68 5.52 -55.03 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.24 Total: 13.05 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 2.35 Total: -47.64 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.23 Total: -38.63 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.75 Total: -3.29 kcal Atomic # 14 Polarization: 33.80 SS G_CDS: 2.03 Total: 35.83 kcal Atomic # 16 Polarization: 8.85 SS G_CDS: -1.03 Total: 7.82 kcal Total: -60.55 5.52 -55.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307895.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.010 kcal (2) G-P(sol) polarization free energy of solvation -60.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds