Wall clock time and date at job start Mon Mar 30 2020 06:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86807 * 119.99639 * 2 1 4 4 H 1.48497 * 109.46936 * 239.99652 * 3 2 1 5 5 H 1.48499 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47047 * 119.99755 * 3 2 1 7 7 C 1.40383 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00456 * 180.02562 * 7 2 1 9 9 C 1.39809 * 119.99522 * 0.02562 * 7 2 1 10 10 C 1.37200 * 124.85053 * 180.02562 * 9 7 2 11 11 C 1.39439 * 115.08721 * 179.97438 * 10 9 7 12 12 C 1.42394 * 128.23422 * 179.97438 * 11 10 9 13 13 C 1.35233 * 120.82672 * 179.97438 * 12 11 10 14 14 C 1.40772 * 120.49511 * 0.30759 * 13 12 11 15 15 C 1.46590 * 120.10766 * 179.72057 * 14 13 12 16 16 O 1.21351 * 120.00086 * 179.97438 * 15 14 13 17 17 C 1.39721 * 119.78804 * 359.41875 * 14 13 12 18 18 F 1.35092 * 119.96139 * 180.30118 * 17 14 13 19 19 C 1.39528 * 120.07631 * 0.57152 * 17 14 13 20 20 S 1.75455 * 124.86008 * 359.97438 * 9 7 2 21 21 H 0.96995 * 120.00106 * 0.02562 * 1 2 3 22 22 H 1.07995 * 122.45422 * 359.97438 * 10 9 7 23 23 H 1.08001 * 119.58299 * 0.02562 * 12 11 10 24 24 H 1.08002 * 119.74921 * 180.02562 * 13 12 11 25 25 H 1.07995 * 119.99927 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 3.0939 1.6965 -1.2124 5 1 1.2751 2.7465 -0.0006 6 1 3.0938 1.6966 1.2125 7 6 2.0083 -1.2157 0.0005 8 1 3.0882 -1.2157 0.0010 9 6 1.3092 -2.4265 0.0005 10 6 1.8923 -3.6684 0.0016 11 6 1.0004 -4.7403 0.0019 12 6 1.2965 -6.1331 0.0024 13 6 0.3047 -7.0524 0.0032 14 6 -1.0438 -6.6485 -0.0029 15 6 -2.1121 -7.6523 -0.0082 16 8 -3.2739 -7.3019 -0.0130 17 6 -1.3608 -5.2877 0.0024 18 9 -2.6537 -4.8962 0.0027 19 6 -0.3435 -4.3327 0.0017 20 16 -0.4390 -2.5751 0.0005 21 1 -0.4850 0.8400 -0.0004 22 1 2.9635 -3.8057 0.0020 23 1 2.3261 -6.4593 0.0030 24 1 0.5491 -8.1044 0.0040 25 1 -1.8651 -8.7036 -0.0077 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396308314.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:27 Heat of formation + Delta-G solvation = -69.139256 kcal Electronic energy + Delta-G solvation = -15000.991018 eV Core-core repulsion = 12177.190620 eV Total energy + Delta-G solvation = -2823.800397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.05436 -38.64905 -37.52380 -35.21004 -33.34707 -29.64334 -29.53210 -26.48607 -23.31199 -22.43370 -20.58291 -19.60582 -18.35585 -16.62307 -16.17844 -15.65986 -15.25931 -14.87991 -14.56071 -14.12273 -13.66909 -13.38040 -13.30057 -12.53167 -12.36950 -12.34469 -11.68903 -11.63678 -11.45684 -11.00158 -10.72026 -10.49521 -10.32231 -9.59975 -9.31105 -9.06898 -8.50983 -7.72744 -7.50012 -6.60825 -5.03422 1.28221 2.18667 2.47906 2.67861 2.73904 2.90436 2.98868 3.35525 3.51707 3.58660 4.35763 4.79952 4.89165 5.11338 5.54775 5.90423 5.91249 6.24926 6.32987 6.58939 6.72374 6.83819 7.00421 7.04431 7.23259 7.43547 7.56734 7.78843 7.97353 8.04482 8.12265 9.31107 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.045818 B = 0.006439 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.964960 B = 4347.278724 C = 4948.392479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.048 3.952 3 Si 0.945 3.055 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.353 4.353 8 H 0.107 0.893 9 C 0.051 3.949 10 C -0.353 4.353 11 C 0.065 3.935 12 C -0.177 4.177 13 C -0.039 4.039 14 C -0.328 4.328 15 C 0.383 3.617 16 O -0.490 6.490 17 C 0.237 3.763 18 F -0.130 7.130 19 C -0.337 4.337 20 S 0.165 5.835 21 H 0.309 0.691 22 H 0.115 0.885 23 H 0.111 0.889 24 H 0.118 0.882 25 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 -1.703 0.014 3.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.177 4.177 3 Si 0.767 3.233 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.387 4.387 8 H 0.125 0.875 9 C -0.069 4.069 10 C -0.376 4.376 11 C 0.056 3.944 12 C -0.197 4.197 13 C -0.060 4.060 14 C -0.333 4.333 15 C 0.247 3.753 16 O -0.368 6.368 17 C 0.213 3.787 18 F -0.108 7.108 19 C -0.452 4.452 20 S 0.425 5.575 21 H 0.123 0.877 22 H 0.133 0.867 23 H 0.130 0.870 24 H 0.136 0.864 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.315 -0.351 0.011 1.361 hybrid contribution 1.509 -0.352 0.003 1.549 sum 2.823 -0.703 0.014 2.910 Atomic orbital electron populations 1.68559 1.08118 1.32198 1.28965 1.26531 0.95227 1.03613 0.92365 0.85681 0.79739 0.77091 0.80813 1.17965 1.19353 1.17959 1.19586 0.96211 0.88525 1.34351 0.87534 1.21679 0.95551 0.96033 0.93674 1.19721 0.98224 0.89836 1.29793 1.17963 0.90736 0.93460 0.92231 1.20447 0.98353 0.91417 1.09518 1.20178 0.90679 0.98432 0.96677 1.20052 0.96062 0.92097 1.25048 1.23443 0.87335 0.93575 0.70941 1.90520 1.22823 1.85278 1.38201 1.17241 0.76527 0.91100 0.93868 1.91474 1.35175 1.91640 1.92531 1.23540 0.95905 1.02773 1.22964 1.85058 1.03986 0.90396 1.78059 0.87670 0.86702 0.87049 0.86402 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.42 10.58 55.57 0.59 -15.83 15 2 C 0.05 0.99 5.50 -17.26 -0.09 0.89 15 3 Si 0.95 15.23 29.56 -169.99 -5.03 10.21 15 4 H -0.26 -4.08 7.11 56.52 0.40 -3.67 15 5 H -0.27 -4.23 7.11 56.52 0.40 -3.83 15 6 H -0.26 -4.07 7.11 56.52 0.40 -3.67 15 7 C -0.35 -7.93 9.27 -38.19 -0.35 -8.28 15 8 H 0.11 2.18 7.85 -52.49 -0.41 1.77 15 9 C 0.05 1.25 6.12 -39.37 -0.24 1.00 15 10 C -0.35 -8.27 10.13 -39.51 -0.40 -8.67 15 11 C 0.06 1.50 5.85 -107.02 -0.63 0.88 15 12 C -0.18 -3.49 10.00 -39.05 -0.39 -3.88 15 13 C -0.04 -0.70 9.69 -39.69 -0.38 -1.08 15 14 C -0.33 -6.67 5.87 -105.02 -0.62 -7.29 15 15 C 0.38 6.95 11.43 34.10 0.39 7.34 15 16 O -0.49 -10.75 16.12 5.50 0.09 -10.67 15 17 C 0.24 5.57 7.32 -38.55 -0.28 5.29 15 18 F -0.13 -3.18 15.50 2.25 0.03 -3.15 15 19 C -0.34 -8.21 6.44 -38.27 -0.25 -8.45 15 20 S 0.16 4.02 20.14 -107.50 -2.16 1.85 15 21 H 0.31 5.97 8.29 -40.82 -0.34 5.63 15 22 H 0.12 2.49 8.06 -52.49 -0.42 2.07 15 23 H 0.11 1.89 8.06 -52.49 -0.42 1.46 15 24 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 25 H 0.09 1.14 8.06 -52.49 -0.42 0.71 15 LS Contribution 249.22 15.07 3.76 3.76 Total: -1.00 -27.24 249.22 -7.21 -34.44 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -1.24 Total: 1.63 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -3.25 Total: -22.25 kcal Atomic # 7 Polarization: -16.42 SS G_CDS: 0.59 Total: -15.83 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.03 Total: -3.15 kcal Atomic # 14 Polarization: 15.23 SS G_CDS: -5.03 Total: 10.21 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -2.16 Total: 1.85 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.24 -7.21 -34.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396308314.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.695 kcal (2) G-P(sol) polarization free energy of solvation -27.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds