Wall clock time and date at job start Mon Mar 30 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30966 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47329 * 300.00336 * 3 2 1 6 6 H 1.48505 * 109.46996 * 60.00343 * 3 2 1 7 7 C 1.39815 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00052 * 159.47976 * 7 2 1 9 9 C 1.40833 * 120.00088 * 339.48068 * 7 2 1 10 10 C 1.40989 * 120.25705 * 320.63510 * 9 7 2 11 11 O 1.35660 * 120.08510 * 359.97438 * 10 9 7 12 12 C 1.39561 * 119.83181 * 180.28871 * 10 9 7 13 13 S 1.76055 * 130.42804 * 179.67181 * 12 10 9 14 14 C 1.75490 * 91.52410 * 180.02562 * 13 12 10 15 15 C 1.32492 * 110.78129 * 359.97438 * 14 13 12 16 16 C 1.39989 * 120.14689 * 359.69119 * 12 10 9 17 17 C 1.42190 * 119.05258 * 0.02562 * 16 12 10 18 18 C 1.35136 * 121.03470 * 0.02562 * 17 16 12 19 19 C 1.50702 * 119.77868 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.46707 * 359.97438 * 19 18 17 21 21 H 0.97004 * 119.99943 * 359.97438 * 1 2 3 22 22 H 0.96691 * 114.00163 * 264.60025 * 11 10 9 23 23 H 1.08006 * 124.60559 * 179.97438 * 14 13 12 24 24 H 1.07998 * 122.06480 * 180.02562 * 15 14 13 25 25 H 1.07992 * 119.48661 * 180.02562 * 17 16 12 26 26 H 1.09003 * 109.46830 * 240.00325 * 19 18 17 27 27 H 1.08998 * 109.47186 * 119.99975 * 19 18 17 28 28 H 0.96697 * 113.99970 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 3.7037 1.3464 0.0006 5 1 1.8849 2.3965 -1.2124 6 1 1.8850 2.3964 1.2126 7 6 2.0087 -1.2108 -0.0005 8 1 3.0373 -1.2404 -0.3284 9 6 1.3716 -2.3920 0.4264 10 6 0.4951 -2.3671 1.5305 11 8 0.2619 -1.2034 2.1876 12 6 -0.1269 -3.5440 1.9498 13 16 -1.2476 -3.8329 3.2764 14 6 -1.3524 -5.5389 2.8783 15 6 -0.5940 -5.8244 1.8301 16 6 0.1129 -4.7456 1.2728 17 6 0.9958 -4.7460 0.1583 18 6 1.6014 -3.6094 -0.2511 19 6 2.5325 -3.6423 -1.4357 20 8 2.6079 -4.9752 -1.9453 21 1 -0.4850 0.8401 0.0004 22 1 0.8169 -1.0749 2.9689 23 1 -1.9535 -6.2582 3.4149 24 1 -0.5234 -6.8247 1.4290 25 1 1.1855 -5.6689 -0.3694 26 1 3.5253 -3.3151 -1.1266 27 1 2.1560 -2.9766 -2.2124 28 1 3.1913 -5.0713 -2.7104 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396329629.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:09 Heat of formation + Delta-G solvation = -75.434705 kcal Electronic energy + Delta-G solvation = -15926.325176 eV Core-core repulsion = 13225.712092 eV Total energy + Delta-G solvation = -2700.613084 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.48184 -37.96317 -37.67811 -35.82412 -34.57887 -30.99744 -30.62322 -27.48190 -26.21950 -23.68793 -22.74065 -20.56273 -19.50617 -18.76384 -18.30914 -17.30057 -16.81658 -16.19930 -15.83078 -15.57862 -15.33267 -14.74574 -14.60338 -14.08770 -13.75731 -13.50601 -13.15024 -12.99084 -12.67545 -12.18601 -12.12998 -11.86917 -11.66125 -11.50721 -10.99327 -10.81049 -10.65498 -10.01540 -9.03959 -8.61486 -8.28777 -6.28929 0.18458 0.76198 0.97327 1.36585 1.40879 1.44487 1.56987 1.78672 2.24034 2.77493 3.38218 3.49279 3.97550 4.14015 4.43755 4.60973 4.67219 4.69869 4.80343 5.04865 5.17096 5.23590 5.30185 5.44969 5.79954 5.87672 5.93848 6.12869 6.43913 6.73997 6.87211 7.06204 7.43226 8.38386 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.010164 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.695487 B = 2754.222319 C = 3981.340526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.055 3.945 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.481 4.481 8 H 0.091 0.909 9 C 0.095 3.905 10 C 0.021 3.979 11 O -0.472 6.472 12 C -0.133 4.133 13 S 0.022 5.978 14 C -0.243 4.243 15 C -0.093 4.093 16 C -0.204 4.204 17 C -0.051 4.051 18 C -0.174 4.174 19 C 0.152 3.848 20 O -0.585 6.585 21 H 0.285 0.715 22 H 0.355 0.645 23 H 0.187 0.813 24 H 0.153 0.847 25 H 0.125 0.875 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 -4.145 0.517 5.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.165 4.165 3 Si 0.795 3.205 4 H -0.176 1.176 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.510 4.510 8 H 0.109 0.891 9 C 0.089 3.911 10 C -0.032 4.032 11 O -0.278 6.278 12 C -0.248 4.248 13 S 0.282 5.718 14 C -0.375 4.375 15 C -0.122 4.122 16 C -0.211 4.211 17 C -0.071 4.071 18 C -0.176 4.176 19 C 0.075 3.925 20 O -0.393 6.393 21 H 0.096 0.904 22 H 0.207 0.793 23 H 0.204 0.796 24 H 0.171 0.829 25 H 0.142 0.858 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.495 -3.240 1.668 3.939 hybrid contribution 1.336 0.099 -1.047 1.700 sum 2.831 -3.141 0.621 4.274 Atomic orbital electron populations 1.69864 1.09459 1.30514 1.30973 1.26507 0.94921 1.03785 0.91324 0.85289 0.79775 0.76959 0.78434 1.17589 1.19633 1.19768 1.19478 0.99484 0.92093 1.39924 0.89099 1.17745 0.90202 0.92899 0.90224 1.17753 1.05512 0.82985 0.96938 1.84952 1.62363 1.37475 1.42966 1.23178 1.02935 0.97610 1.01083 1.83596 1.48400 1.06037 1.33774 1.25111 1.09599 0.97981 1.04834 1.20030 0.96739 0.99188 0.96251 1.18222 1.07621 0.92469 1.02738 1.20350 0.94570 0.98074 0.94069 1.19617 1.04556 0.94044 0.99412 1.20407 0.96722 0.82672 0.92744 1.86366 1.71734 1.28957 1.52259 0.90449 0.79297 0.79588 0.82934 0.85751 0.92447 0.93267 0.75437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.30 11.32 21.81 0.25 -41.05 15 2 C 0.05 2.64 4.38 85.20 0.37 3.02 15 3 Si 0.97 36.71 29.61 68.60 2.03 38.74 15 4 H -0.25 -9.05 7.11 99.48 0.71 -8.34 15 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 15 6 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 7 C -0.48 -23.88 8.05 23.29 0.19 -23.69 15 8 H 0.09 4.20 7.41 -2.91 -0.02 4.18 15 9 C 0.10 4.92 5.35 -21.24 -0.11 4.80 15 10 C 0.02 1.07 6.22 23.26 0.14 1.21 15 11 O -0.47 -23.67 10.41 -89.75 -0.93 -24.60 15 12 C -0.13 -6.49 6.42 23.01 0.15 -6.34 15 13 S 0.02 0.90 23.27 -56.49 -1.31 -0.42 15 14 C -0.24 -8.55 11.09 66.69 0.74 -7.81 15 15 C -0.09 -3.53 10.13 21.69 0.22 -3.31 15 16 C -0.20 -9.41 5.88 -21.32 -0.13 -9.54 15 17 C -0.05 -2.31 9.35 22.54 0.21 -2.10 15 18 C -0.17 -8.23 5.87 -19.85 -0.12 -8.34 15 19 C 0.15 5.79 6.37 71.24 0.45 6.25 15 20 O -0.58 -19.00 12.06 -148.98 -1.80 -20.80 15 21 H 0.29 13.87 8.30 -92.71 -0.77 13.10 15 22 H 0.35 15.05 9.06 -74.06 -0.67 14.38 15 23 H 0.19 4.98 8.06 -2.91 -0.02 4.96 15 24 H 0.15 4.75 8.06 -2.91 -0.02 4.73 15 25 H 0.12 5.19 6.87 -2.91 -0.02 5.17 15 26 H 0.06 2.04 7.84 -2.39 -0.02 2.02 15 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 28 H 0.40 8.02 9.12 -74.06 -0.68 7.34 15 Total: -1.00 -63.54 259.95 0.23 -63.31 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.12 Total: 30.66 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 2.12 Total: -45.84 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.25 Total: -41.05 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -2.73 Total: -45.40 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -1.31 Total: -0.42 kcal Total: -63.54 0.23 -63.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396329629.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.126 kcal (2) G-P(sol) polarization free energy of solvation -63.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds