Wall clock time and date at job start Mon Mar 30 2020 06:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48504 * 109.47459 * 274.63045 * 3 2 1 5 5 H 1.48500 * 109.47053 * 34.63505 * 3 2 1 6 6 H 1.48506 * 109.47184 * 154.63248 * 3 2 1 7 7 C 1.39836 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00072 * 162.87826 * 7 2 1 9 9 C 1.40992 * 119.99715 * 342.87671 * 7 2 1 10 10 C 1.41141 * 120.17856 * 334.08749 * 9 7 2 11 11 C 1.35691 * 120.34268 * 179.97438 * 10 9 7 12 12 O 1.35842 * 119.61588 * 179.97438 * 11 10 9 13 13 C 1.42467 * 120.76267 * 359.97438 * 11 10 9 14 14 C 1.40360 * 128.62400 * 180.02562 * 13 11 10 15 15 C 1.32583 * 115.87560 * 179.19265 * 14 13 11 16 16 S 1.75485 * 110.80818 * 0.69922 * 15 14 13 17 17 C 1.40246 * 118.97573 * 359.73616 * 13 11 10 18 18 C 1.38948 * 120.19459 * 0.53638 * 17 13 11 19 19 C 1.50705 * 119.96386 * 179.72675 * 18 17 13 20 20 O 1.42892 * 109.47534 * 269.73061 * 19 18 17 21 21 H 0.97006 * 120.00241 * 359.97438 * 1 2 3 22 22 H 1.08007 * 119.82916 * 359.95994 * 10 9 7 23 23 H 0.96701 * 113.99720 * 90.00607 * 12 11 10 24 24 H 1.08004 * 122.06454 * 359.94117 * 14 13 11 25 25 H 1.08008 * 124.59689 * 180.16385 * 15 14 13 26 26 H 1.08997 * 109.47304 * 149.72382 * 19 18 17 27 27 H 1.09008 * 109.46745 * 29.73075 * 19 18 17 28 28 H 0.96698 * 113.99904 * 300.00183 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3927 2.1030 -1.3955 5 1 1.4929 2.6224 0.7957 6 1 3.5862 1.4139 0.5998 7 6 2.0083 -1.2110 -0.0005 8 1 3.0524 -1.2316 -0.2759 9 6 1.3502 -2.4051 0.3584 10 6 0.2256 -2.3669 1.2105 11 6 -0.4106 -3.5141 1.5577 12 8 -1.4912 -3.4602 2.3791 13 6 0.0417 -4.7742 1.0707 14 6 -0.4860 -6.0506 1.3205 15 6 0.1294 -7.0591 0.7187 16 16 1.4855 -6.4825 -0.2341 17 6 1.1553 -4.8136 0.2191 18 6 1.8091 -3.6386 -0.1310 19 6 3.0090 -3.6875 -1.0416 20 8 4.1960 -3.8269 -0.2585 21 1 -0.4851 0.8401 0.0004 22 1 -0.1303 -1.4197 1.5883 23 1 -2.3338 -3.3635 1.9146 24 1 -1.3478 -6.2009 1.9539 25 1 -0.1592 -8.0959 0.8099 26 1 3.0626 -2.7664 -1.6219 27 1 2.9176 -4.5379 -1.7175 28 1 4.3418 -3.1040 0.3669 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330118.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:52 Heat of formation + Delta-G solvation = -85.843499 kcal Electronic energy + Delta-G solvation = -15862.291365 eV Core-core repulsion = 13161.226922 eV Total energy + Delta-G solvation = -2701.064443 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66220 -38.30718 -37.18916 -36.57622 -34.50457 -31.17309 -30.60329 -27.43192 -26.16946 -24.15728 -22.34038 -21.18869 -20.06669 -18.47075 -18.09713 -17.28584 -16.91296 -16.45753 -16.12545 -15.56607 -15.30631 -14.83271 -14.66138 -14.02792 -13.86259 -13.47197 -13.11677 -12.97148 -12.72819 -12.61922 -12.12713 -11.94850 -11.65915 -11.60214 -11.07597 -10.95203 -10.76278 -10.08451 -9.18787 -8.86956 -8.35070 -6.46459 0.12889 0.73725 0.94716 1.31846 1.36887 1.41803 1.55254 1.76675 2.15246 2.56237 3.34402 3.62156 3.83384 4.17864 4.34868 4.46255 4.71727 4.76875 4.87230 4.98463 5.09021 5.27394 5.29319 5.43158 5.78446 5.82708 5.87437 5.99650 6.31587 6.68510 6.71471 6.88291 7.03497 8.13062 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025365 B = 0.008860 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.612015 B = 3159.464411 C = 4106.191147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.039 3.961 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.458 4.458 8 H 0.097 0.903 9 C 0.128 3.872 10 C -0.188 4.188 11 C 0.144 3.856 12 O -0.510 6.510 13 C -0.245 4.245 14 C -0.085 4.085 15 C -0.253 4.253 16 S 0.036 5.964 17 C -0.062 4.062 18 C -0.263 4.263 19 C 0.150 3.850 20 O -0.580 6.580 21 H 0.296 0.704 22 H 0.118 0.882 23 H 0.397 0.603 24 H 0.143 0.857 25 H 0.184 0.816 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -2.085 -0.388 2.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.485 4.485 8 H 0.115 0.885 9 C 0.122 3.878 10 C -0.209 4.209 11 C 0.098 3.902 12 O -0.322 6.322 13 C -0.252 4.252 14 C -0.115 4.115 15 C -0.386 4.386 16 S 0.296 5.704 17 C -0.177 4.177 18 C -0.272 4.272 19 C 0.073 3.927 20 O -0.387 6.387 21 H 0.107 0.893 22 H 0.136 0.864 23 H 0.254 0.746 24 H 0.160 0.840 25 H 0.202 0.798 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.109 -3.360 -1.173 3.727 hybrid contribution -1.625 1.953 0.886 2.690 sum -0.516 -1.407 -0.287 1.526 Atomic orbital electron populations 1.69867 1.09266 1.31604 1.31894 1.26881 0.95487 1.04908 0.90763 0.85114 0.79426 0.75367 0.79566 1.18571 1.19282 1.17546 1.19892 0.98773 0.91203 1.38672 0.88470 1.17484 0.90128 0.92180 0.88028 1.21155 1.01258 0.96700 1.01740 1.18075 0.89731 0.90873 0.91508 1.84617 1.16641 1.95900 1.35046 1.18405 1.02901 0.94312 1.09544 1.19846 1.00886 0.90442 1.00280 1.25061 1.02613 1.03280 1.07656 1.83558 1.34047 0.97755 1.55021 1.22370 0.98331 0.96819 1.00193 1.19861 1.05343 0.91043 1.10964 1.20617 0.80959 1.00383 0.90737 1.86376 1.43459 1.52121 1.56759 0.89295 0.86442 0.74584 0.83985 0.79848 0.92606 0.90759 0.76922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.31 10.99 21.81 0.24 -37.07 15 2 C 0.04 1.70 5.13 85.22 0.44 2.14 15 3 Si 0.99 33.38 29.59 68.60 2.03 35.41 15 4 H -0.26 -8.58 7.11 99.48 0.71 -7.87 15 5 H -0.27 -8.85 7.11 99.48 0.71 -8.14 15 6 H -0.25 -8.32 7.11 99.48 0.71 -7.61 15 7 C -0.46 -21.38 8.08 23.33 0.19 -21.20 15 8 H 0.10 4.20 6.71 -2.91 -0.02 4.18 15 9 C 0.13 6.35 5.55 -21.36 -0.12 6.23 15 10 C -0.19 -9.44 8.48 22.39 0.19 -9.25 15 11 C 0.14 6.76 6.71 22.73 0.15 6.92 15 12 O -0.51 -20.57 13.33 -91.78 -1.22 -21.80 15 13 C -0.25 -11.22 5.90 -21.22 -0.13 -11.35 15 14 C -0.09 -3.29 9.96 21.63 0.22 -3.08 15 15 C -0.25 -8.85 11.10 66.66 0.74 -8.11 15 16 S 0.04 1.38 22.58 -56.49 -1.28 0.11 15 17 C -0.06 -2.86 6.29 22.93 0.14 -2.72 15 18 C -0.26 -12.44 5.56 -19.16 -0.11 -12.54 15 19 C 0.15 6.27 6.42 71.24 0.46 6.72 15 20 O -0.58 -23.17 13.67 -148.98 -2.04 -25.20 15 21 H 0.30 12.34 8.30 -92.70 -0.77 11.57 15 22 H 0.12 6.06 6.22 -2.91 -0.02 6.04 15 23 H 0.40 12.17 9.06 -74.06 -0.67 11.50 15 24 H 0.14 4.78 8.06 -2.91 -0.02 4.76 15 25 H 0.18 4.93 8.06 -2.91 -0.02 4.91 15 26 H 0.06 2.28 6.75 -2.39 -0.02 2.26 15 27 H 0.07 2.99 7.58 -2.38 -0.02 2.97 15 28 H 0.38 13.47 8.93 -74.06 -0.66 12.81 15 Total: -1.00 -57.23 260.33 -0.19 -57.42 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.10 Total: 37.37 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 2.18 Total: -46.23 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.24 Total: -37.07 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -3.26 Total: -47.00 kcal Atomic # 14 Polarization: 33.38 SS G_CDS: 2.03 Total: 35.41 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.28 Total: 0.11 kcal Total: -57.23 -0.19 -57.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330118.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.423 kcal (2) G-P(sol) polarization free energy of solvation -57.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds