Wall clock time and date at job start Mon Mar 30 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31076 * 1 3 3 Si 1.86791 * 120.00201 * 2 1 4 4 H 1.48495 * 109.47347 * 269.99853 * 3 2 1 5 5 H 1.48503 * 109.47351 * 29.99658 * 3 2 1 6 6 H 1.48501 * 109.47077 * 149.99748 * 3 2 1 7 7 C 1.39720 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99729 * 191.09136 * 7 2 1 9 9 C 1.40796 * 120.00266 * 11.08927 * 7 2 1 10 10 C 1.36440 * 123.30455 * 22.41263 * 9 7 2 11 11 S 1.69973 * 111.95606 * 179.71137 * 10 9 7 12 12 C 1.75799 * 93.23733 * 0.26483 * 11 10 9 13 13 C 1.39854 * 130.12432 * 180.02562 * 12 11 10 14 14 C 1.37546 * 120.45603 * 180.02562 * 13 12 11 15 15 C 1.50704 * 119.92638 * 179.97438 * 14 13 12 16 16 O 1.42899 * 109.47055 * 0.02562 * 15 14 13 17 17 C 1.39086 * 120.14336 * 359.97438 * 14 13 12 18 18 O 1.35971 * 119.92808 * 179.97438 * 17 14 13 19 19 C 1.37894 * 120.14093 * 0.02562 * 17 14 13 20 20 C 1.39324 * 110.17811 * 359.97438 * 12 11 10 21 21 H 0.96997 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.08001 * 124.02092 * 359.97166 * 10 9 7 23 23 H 1.07997 * 119.76932 * 0.02562 * 13 12 11 24 24 H 1.09003 * 109.46986 * 119.99929 * 15 14 13 25 25 H 1.08996 * 109.47038 * 240.00504 * 15 14 13 26 26 H 0.96696 * 114.00003 * 179.97438 * 16 15 14 27 27 H 0.96700 * 113.99966 * 270.02440 * 18 17 14 28 28 H 1.08003 * 119.86937 * 180.02562 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6176 0.0000 4 1 2.4923 2.0463 -1.4000 5 1 1.4422 2.6527 0.7000 6 1 3.5423 1.4400 0.7001 7 6 2.0093 -1.2101 0.0005 8 1 3.0742 -1.2188 0.1805 9 6 1.3249 -2.4181 -0.2334 10 6 0.1288 -2.4873 -0.8862 11 16 -0.4333 -4.0862 -1.0151 12 6 0.9549 -4.7484 -0.1638 13 6 1.2649 -6.0727 0.1617 14 6 2.4222 -6.3707 0.8427 15 6 2.7441 -7.8020 1.1879 16 8 1.7039 -8.6541 0.7044 17 6 3.2959 -5.3541 1.2135 18 8 4.4385 -5.6536 1.8871 19 6 3.0054 -4.0430 0.9004 20 6 1.8263 -3.7252 0.2035 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3961 -1.6287 -1.2783 23 1 0.5909 -6.8669 -0.1237 24 1 3.6893 -8.0838 0.7239 25 1 2.8254 -7.9053 2.2699 26 1 1.8453 -9.5922 0.8912 27 1 4.3399 -5.6517 2.8490 28 1 3.6872 -3.2570 1.1900 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330614.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:30 Heat of formation + Delta-G solvation = -87.332594 kcal Electronic energy + Delta-G solvation = -15424.555407 eV Core-core repulsion = 12723.426392 eV Total energy + Delta-G solvation = -2701.129015 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88566 -38.28838 -37.73805 -36.15352 -33.91710 -31.27449 -30.56964 -28.02569 -26.40265 -23.71957 -22.91828 -21.42757 -19.27172 -18.47442 -18.20623 -17.97127 -16.90282 -16.37498 -16.10985 -15.64711 -15.47722 -14.79750 -14.66950 -14.20688 -13.83888 -13.55870 -13.20826 -12.89302 -12.73910 -12.48572 -12.27184 -11.93233 -11.71067 -11.33694 -11.26923 -11.10187 -10.83706 -10.18062 -9.01464 -8.62554 -8.45931 -6.30896 0.07118 0.27856 1.11813 1.28187 1.36814 1.50075 1.86365 1.93051 2.21772 2.62143 3.24917 3.31260 3.38912 3.92570 4.07960 4.39669 4.46104 4.62671 4.67966 4.81338 5.05904 5.18401 5.25866 5.32434 5.48645 5.66073 5.86850 5.96823 6.48986 6.80411 6.89183 6.91510 7.01006 8.39241 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029591 B = 0.006989 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.016093 B = 4005.491323 C = 4886.273212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.024 3.976 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.382 4.382 11 S 0.061 5.939 12 C -0.166 4.166 13 C -0.062 4.062 14 C -0.119 4.119 15 C 0.138 3.862 16 O -0.588 6.588 17 C 0.103 3.897 18 O -0.493 6.493 19 C -0.115 4.115 20 C -0.082 4.082 21 H 0.284 0.716 22 H 0.140 0.860 23 H 0.140 0.860 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.403 0.597 27 H 0.406 0.594 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 -11.229 4.578 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.189 4.189 3 Si 0.810 3.190 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.095 0.905 9 C 0.043 3.957 10 C -0.518 4.518 11 S 0.324 5.676 12 C -0.281 4.281 13 C -0.085 4.085 14 C -0.123 4.123 15 C 0.061 3.939 16 O -0.397 6.397 17 C 0.055 3.945 18 O -0.305 6.305 19 C -0.135 4.135 20 C -0.092 4.092 21 H 0.094 0.906 22 H 0.157 0.843 23 H 0.157 0.843 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.254 0.746 27 H 0.265 0.735 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.889 -11.070 3.158 12.151 hybrid contribution 1.211 1.467 1.105 2.200 sum 5.100 -9.603 4.263 11.679 Atomic orbital electron populations 1.69951 1.08854 1.29813 1.37482 1.26736 0.95662 1.04440 0.92065 0.85094 0.78907 0.75718 0.79318 1.19015 1.19353 1.17934 1.19270 0.95789 0.90891 1.44058 0.90546 1.17769 0.93421 0.91355 0.93171 1.24324 1.07710 0.98392 1.21327 1.81465 1.23678 1.00238 1.62232 1.22976 1.00607 0.97625 1.06903 1.20272 0.97495 0.92440 0.98304 1.20052 0.94174 0.96270 1.01763 1.20645 0.89893 0.84531 0.98848 1.86419 1.47613 1.22825 1.82879 1.17587 0.87375 0.90013 0.99505 1.84771 1.29415 1.91826 1.24515 1.21125 0.95630 0.96481 1.00309 1.19728 0.95775 0.93468 1.00239 0.90608 0.84299 0.84260 0.90853 0.89929 0.74619 0.73518 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.88 10.79 21.80 0.24 -45.64 15 2 C 0.02 1.24 5.36 85.16 0.46 1.70 15 3 Si 0.99 39.81 29.57 68.60 2.03 41.84 15 4 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 7 C -0.47 -26.04 9.07 23.25 0.21 -25.83 15 8 H 0.08 4.05 7.70 -2.91 -0.02 4.03 15 9 C 0.05 2.94 5.69 -20.87 -0.12 2.82 15 10 C -0.38 -21.46 9.51 67.40 0.64 -20.82 15 11 S 0.06 2.89 22.96 -56.49 -1.30 1.59 15 12 C -0.17 -7.70 6.44 22.92 0.15 -7.55 15 13 C -0.06 -2.39 9.40 22.50 0.21 -2.18 15 14 C -0.12 -3.94 5.88 -19.82 -0.12 -4.06 15 15 C 0.14 3.10 6.90 71.24 0.49 3.59 15 16 O -0.59 -12.81 12.12 -148.98 -1.80 -14.61 15 17 C 0.10 3.55 6.66 22.39 0.15 3.70 15 18 O -0.49 -12.88 12.92 -93.22 -1.20 -14.08 15 19 C -0.12 -4.90 9.80 22.76 0.22 -4.68 15 20 C -0.08 -4.11 6.02 -20.24 -0.12 -4.23 15 21 H 0.28 14.17 8.30 -92.71 -0.77 13.40 15 22 H 0.14 8.33 6.26 -2.91 -0.02 8.31 15 23 H 0.14 5.02 6.97 -2.91 -0.02 5.00 15 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 15 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 15 26 H 0.40 4.05 9.12 -74.06 -0.68 3.38 15 27 H 0.41 6.31 9.06 -74.06 -0.67 5.64 15 28 H 0.13 5.20 7.89 -2.91 -0.02 5.17 15 Total: -1.00 -69.16 261.99 0.01 -69.14 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.12 Total: 19.31 kcal Atomic # 6 Polarization: -59.71 SS G_CDS: 2.17 Total: -57.54 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.24 Total: -45.64 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -3.01 Total: -28.69 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.30 Total: 1.59 kcal Total: -69.16 0.01 -69.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330614.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.190 kcal (2) G-P(sol) polarization free energy of solvation -69.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds