Wall clock time and date at job start Mon Mar 30 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30973 * 1 3 3 Si 1.86806 * 120.00020 * 2 1 4 4 H 1.48504 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47017 * 299.99780 * 3 2 1 6 6 H 1.48496 * 109.47079 * 59.99990 * 3 2 1 7 7 C 1.39787 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00363 * 197.87879 * 7 2 1 9 9 C 1.41041 * 119.99758 * 17.87516 * 7 2 1 10 10 C 1.41116 * 120.11979 * 24.95938 * 9 7 2 11 11 C 1.35595 * 120.16552 * 180.02562 * 10 9 7 12 12 C 1.50694 * 119.49446 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.47047 * 359.97438 * 12 11 10 14 14 C 1.40684 * 121.01126 * 0.02562 * 11 10 9 15 15 S 1.76021 * 130.19276 * 179.97438 * 14 11 10 16 16 C 1.75266 * 92.23628 * 180.02562 * 15 14 11 17 17 C 1.31760 * 111.44094 * 359.97438 * 16 15 14 18 18 C 1.39804 * 120.22127 * 359.97438 * 14 11 10 19 19 C 1.40622 * 120.11842 * 204.68817 * 9 7 2 20 20 O 1.35531 * 120.08427 * 359.97438 * 19 9 7 21 21 H 0.97000 * 119.99942 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.91467 * 359.97438 * 10 9 7 23 23 H 1.09002 * 109.47698 * 119.99634 * 12 11 10 24 24 H 1.08998 * 109.47275 * 239.99759 * 12 11 10 25 25 H 0.96704 * 113.99875 * 180.02562 * 13 12 11 26 26 H 1.08005 * 124.28460 * 179.97438 * 16 15 14 27 27 H 1.07997 * 122.57280 * 179.97438 * 17 16 15 28 28 H 0.96693 * 114.00388 * 89.99886 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 3.7038 1.3464 0.0006 5 1 1.8850 2.3965 -1.2126 6 1 1.8850 2.3965 1.2125 7 6 2.0087 -1.2105 0.0005 8 1 3.0497 -1.2330 0.2877 9 6 1.3546 -2.4027 -0.3739 10 6 0.2279 -2.3558 -1.2221 11 6 -0.4020 -3.5013 -1.5822 12 6 -1.6035 -3.4338 -2.4893 13 8 -1.8722 -2.0705 -2.8231 14 6 0.0490 -4.7520 -1.1221 15 16 -0.5751 -6.3686 -1.4310 16 6 0.6597 -7.1105 -0.4328 17 6 1.4683 -6.2075 0.0838 18 6 1.1624 -4.8323 -0.2805 19 6 1.8264 -3.6427 0.0923 20 8 2.9116 -3.6958 0.9024 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1341 -1.4051 -1.5848 23 1 -1.4037 -3.9985 -3.3999 24 1 -2.4678 -3.8599 -1.9798 25 1 -2.6348 -1.9512 -3.4057 26 1 0.7470 -8.1735 -0.2625 27 1 2.2944 -6.4678 0.7289 28 1 2.7017 -3.6449 1.8449 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330639.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:54 Heat of formation + Delta-G solvation = -60.373406 kcal Electronic energy + Delta-G solvation = -15791.958374 eV Core-core repulsion = 13091.998397 eV Total energy + Delta-G solvation = -2699.959977 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.65963 -36.55123 -35.39514 -34.71968 -32.98429 -29.90748 -28.14400 -25.70431 -24.56292 -22.41830 -20.39133 -19.54800 -17.76426 -17.10734 -16.46688 -15.49896 -15.36992 -14.73641 -14.39918 -13.96284 -13.80053 -13.16476 -13.03098 -12.42876 -12.13037 -11.63852 -11.47257 -11.27828 -10.99960 -10.81126 -10.55777 -10.25475 -10.14005 -9.73948 -9.61008 -9.13308 -9.06482 -8.17169 -7.39306 -6.98546 -6.64211 -4.42165 1.83663 2.46175 2.51065 2.94667 3.00996 3.04674 3.10435 3.41215 3.85649 4.37437 4.80601 5.26840 5.46431 5.65169 5.80216 5.95756 6.04537 6.12179 6.38622 6.57670 6.82467 6.98389 7.11736 7.35551 7.37609 7.59304 7.77490 8.07451 8.16630 8.33995 8.63470 8.70873 9.11473 10.02464 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025094 B = 0.008682 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.527441 B = 3224.211789 C = 4248.776048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.092 3.908 10 C -0.085 4.085 11 C -0.070 4.070 12 C 0.126 3.874 13 O -0.556 6.556 14 C -0.208 4.208 15 S 0.001 5.999 16 C -0.211 4.211 17 C -0.104 4.104 18 C -0.060 4.060 19 C -0.016 4.016 20 O -0.487 6.487 21 H 0.285 0.715 22 H 0.147 0.853 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.368 0.632 26 H 0.150 0.850 27 H 0.130 0.870 28 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 -4.368 -1.725 5.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.107 0.893 9 C 0.088 3.912 10 C -0.105 4.105 11 C -0.074 4.074 12 C 0.048 3.952 13 O -0.360 6.360 14 C -0.323 4.323 15 S 0.260 5.740 16 C -0.344 4.344 17 C -0.135 4.135 18 C -0.067 4.067 19 C -0.065 4.065 20 O -0.294 6.294 21 H 0.096 0.904 22 H 0.164 0.836 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.213 0.787 26 H 0.168 0.832 27 H 0.148 0.852 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.237 -4.782 -2.680 6.366 hybrid contribution 0.676 1.033 1.033 1.610 sum -2.561 -3.748 -1.648 4.830 Atomic orbital electron populations 1.69879 1.07576 1.29812 1.32869 1.26045 0.94820 1.01790 0.92181 0.86170 0.81087 0.80349 0.78690 1.18144 1.19482 1.19855 1.19553 0.98608 0.90520 1.37962 0.89289 1.17774 0.91198 0.91712 0.90553 1.20961 0.96096 0.97384 0.96077 1.18418 0.97300 0.91287 1.00434 1.20766 0.95601 0.82620 0.96189 1.86643 1.52500 1.25908 1.70930 1.21423 1.03912 0.94315 1.12628 1.83256 1.35710 0.99474 1.55600 1.24603 1.01566 1.02090 1.06164 1.20918 0.99889 0.91512 1.01214 1.19126 0.95327 0.92425 0.99810 1.18131 0.94960 0.90176 1.03271 1.84718 1.30326 1.95805 1.18548 0.90418 0.83607 0.93774 0.93671 0.78695 0.83227 0.85186 0.79495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.57 10.97 55.54 0.61 -18.96 15 2 C 0.07 1.75 5.13 -17.34 -0.09 1.66 15 3 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 15 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 7 C -0.44 -11.47 8.68 -37.94 -0.33 -11.80 15 8 H 0.09 2.31 7.62 -52.48 -0.40 1.91 15 9 C 0.09 2.46 5.57 -106.84 -0.59 1.86 15 10 C -0.08 -2.20 7.93 -39.44 -0.31 -2.52 15 11 C -0.07 -1.65 5.87 -104.65 -0.61 -2.27 15 12 C 0.13 2.43 7.09 36.00 0.26 2.68 15 13 O -0.56 -10.45 12.05 -35.23 -0.42 -10.87 15 14 C -0.21 -4.81 6.34 -38.07 -0.24 -5.05 15 15 S 0.00 0.01 22.91 -107.50 -2.46 -2.45 15 16 C -0.21 -3.77 11.01 28.85 0.32 -3.45 15 17 C -0.10 -2.07 10.27 -38.57 -0.40 -2.46 15 18 C -0.06 -1.43 6.03 -105.27 -0.64 -2.07 15 19 C -0.02 -0.41 6.80 -37.54 -0.26 -0.67 15 20 O -0.49 -11.23 12.64 -18.29 -0.23 -11.46 15 21 H 0.28 6.50 8.30 -40.82 -0.34 6.16 15 22 H 0.15 3.93 5.00 -52.48 -0.26 3.67 15 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 15 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.37 4.60 9.12 45.56 0.42 5.01 15 26 H 0.15 2.13 8.06 -52.48 -0.42 1.70 15 27 H 0.13 2.32 8.06 -52.49 -0.42 1.89 15 28 H 0.35 6.72 9.06 45.56 0.41 7.13 15 LS Contribution 261.71 15.07 3.94 3.94 Total: -1.00 -29.89 261.71 -7.15 -37.04 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -0.66 Total: 13.57 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -2.89 Total: -24.08 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.66 Total: -22.33 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.46 Total: -2.45 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.89 -7.15 -37.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330639.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.336 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds