Wall clock time and date at job start Mon Mar 30 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30981 * 1 3 3 Si 1.86800 * 119.99612 * 2 1 4 4 H 1.48502 * 109.47089 * 239.99435 * 3 2 1 5 5 H 1.48496 * 109.47495 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47042 * 120.00260 * 3 2 1 7 7 C 1.39789 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00176 * 162.65325 * 7 2 1 9 9 C 1.41040 * 119.99848 * 342.64762 * 7 2 1 10 10 C 1.41112 * 120.11936 * 334.45594 * 9 7 2 11 11 C 1.35596 * 120.15946 * 179.72347 * 10 9 7 12 12 C 1.40680 * 121.01633 * 0.26743 * 11 10 9 13 13 S 1.76024 * 130.19393 * 179.97438 * 12 11 10 14 14 C 1.75273 * 92.23654 * 180.02562 * 13 12 11 15 15 C 1.50697 * 124.27966 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.47020 * 270.03623 * 15 14 13 17 17 C 1.31760 * 111.43720 * 0.02562 * 14 13 12 18 18 C 1.39799 * 120.22194 * 359.97438 * 12 11 10 19 19 C 1.40628 * 120.11644 * 154.65999 * 9 7 2 20 20 O 1.35528 * 120.08062 * 0.04735 * 19 9 7 21 21 H 0.97000 * 120.00109 * 0.02562 * 1 2 3 22 22 H 1.07992 * 119.91862 * 359.97438 * 10 9 7 23 23 H 1.08003 * 119.48967 * 180.25274 * 11 10 9 24 24 H 1.08991 * 109.47607 * 30.03965 * 15 14 13 25 25 H 1.09000 * 109.46811 * 150.04528 * 15 14 13 26 26 H 0.96700 * 113.99519 * 179.97438 * 16 15 14 27 27 H 1.08002 * 122.56387 * 180.02562 * 17 14 13 28 28 H 0.96702 * 113.99522 * 270.19098 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2437 1.6178 0.0000 4 1 3.0976 1.6965 -1.2124 5 1 1.2787 2.7465 0.0006 6 1 3.0975 1.6965 1.2125 7 6 2.0088 -1.2106 -0.0005 8 1 3.0519 -1.2317 -0.2794 9 6 1.3518 -2.4044 0.3632 10 6 0.2258 -2.3624 1.2127 11 6 -0.4099 -3.5091 1.5585 12 6 0.0378 -4.7566 1.0870 13 16 -0.5931 -6.3740 1.3777 14 6 0.6429 -7.1105 0.3767 15 6 0.7609 -8.5918 0.1261 16 8 1.5988 -9.1785 1.1240 17 6 1.4566 -6.2053 -0.1279 18 6 1.1534 -4.8326 0.2479 19 6 1.8190 -3.6412 -0.1159 20 8 2.9029 -3.6894 -0.9281 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1329 -1.4143 1.5851 23 1 -1.2731 -3.4641 2.2060 24 1 -0.2283 -9.0474 0.1685 25 1 1.1965 -8.7600 -0.8588 26 1 1.7193 -10.1329 1.0248 27 1 2.2842 -6.4623 -0.7724 28 1 2.6920 -3.6255 -1.8697 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330687.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:59 Heat of formation + Delta-G solvation = -83.836697 kcal Electronic energy + Delta-G solvation = -15359.508124 eV Core-core repulsion = 12658.530703 eV Total energy + Delta-G solvation = -2700.977421 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33624 -38.23203 -37.17419 -36.50787 -34.76610 -31.40396 -30.38109 -27.45386 -26.58085 -23.65468 -22.51732 -21.18936 -19.41039 -18.80872 -18.41338 -17.32903 -17.16378 -16.51206 -16.20839 -15.43067 -15.26427 -14.95656 -14.50056 -14.24797 -13.90325 -13.34676 -13.22953 -12.99093 -12.79454 -12.48367 -12.19643 -11.90444 -11.71761 -11.60758 -11.04852 -10.97629 -10.90190 -9.99965 -9.21563 -8.82267 -8.41874 -6.37608 0.02640 0.66165 0.84790 1.26692 1.37602 1.44107 1.50444 1.61497 2.17502 2.55224 3.40787 3.45971 3.92290 4.00349 4.23803 4.28208 4.41873 4.54910 4.74987 4.84051 5.04546 5.16141 5.30536 5.45080 5.58180 5.69421 5.89645 6.11121 6.39647 6.69548 6.78190 6.93491 7.30859 8.20728 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.044654 B = 0.005945 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.887173 B = 4708.848657 C = 5200.326544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.473 4.473 8 H 0.079 0.921 9 C 0.067 3.933 10 C -0.130 4.130 11 C -0.088 4.088 12 C -0.237 4.237 13 S 0.059 5.941 14 C -0.175 4.175 15 C 0.153 3.847 16 O -0.587 6.587 17 C -0.109 4.109 18 C -0.078 4.078 19 C -0.033 4.033 20 O -0.493 6.493 21 H 0.294 0.706 22 H 0.122 0.878 23 H 0.119 0.881 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.403 0.597 27 H 0.146 0.854 28 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 -9.308 -1.457 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.502 4.502 8 H 0.097 0.903 9 C 0.063 3.937 10 C -0.151 4.151 11 C -0.110 4.110 12 C -0.351 4.351 13 S 0.320 5.680 14 C -0.290 4.290 15 C 0.074 3.926 16 O -0.397 6.397 17 C -0.140 4.140 18 C -0.085 4.085 19 C -0.081 4.081 20 O -0.302 6.302 21 H 0.105 0.895 22 H 0.140 0.860 23 H 0.136 0.864 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.254 0.746 27 H 0.163 0.837 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.997 -9.227 0.085 9.441 hybrid contribution 1.102 1.020 -1.473 2.104 sum -0.896 -8.207 -1.388 8.372 Atomic orbital electron populations 1.69879 1.08870 1.31335 1.33939 1.26804 0.95549 1.04568 0.90895 0.85179 0.78788 0.75249 0.80133 1.18307 1.18702 1.18679 1.19620 0.98303 0.91696 1.40548 0.90275 1.18063 0.91975 0.92541 0.91097 1.20960 0.98177 0.97136 0.98830 1.20077 1.00005 0.90191 1.00775 1.22235 1.03842 0.97357 1.11700 1.83079 1.33777 0.96155 1.55005 1.23855 1.00920 0.99755 1.04466 1.20511 0.95358 0.84852 0.91846 1.86554 1.71070 1.28618 1.53497 1.20932 1.00309 0.90134 1.02663 1.19515 0.95566 0.93495 0.99877 1.18344 0.95381 0.90648 1.03763 1.84635 1.30126 1.95661 1.19737 0.89462 0.86024 0.86351 0.90477 0.89478 0.74607 0.83664 0.77556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.52 10.98 21.81 0.24 -40.28 15 2 C 0.04 1.87 5.13 85.19 0.44 2.30 15 3 Si 0.99 36.97 29.59 68.60 2.03 39.00 15 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 5 H -0.26 -9.16 7.11 99.48 0.71 -8.45 15 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 7 C -0.47 -25.23 8.68 23.33 0.20 -25.02 15 8 H 0.08 4.21 7.63 -2.91 -0.02 4.18 15 9 C 0.07 3.67 5.56 -21.30 -0.12 3.55 15 10 C -0.13 -6.78 8.59 22.36 0.19 -6.59 15 11 C -0.09 -4.22 9.98 22.25 0.22 -4.00 15 12 C -0.24 -11.07 6.50 23.24 0.15 -10.91 15 13 S 0.06 2.20 23.20 -56.49 -1.31 0.89 15 14 C -0.17 -6.14 6.00 24.95 0.15 -5.99 15 15 C 0.15 3.70 7.47 71.23 0.53 4.24 15 16 O -0.59 -14.42 13.64 -148.98 -2.03 -16.45 15 17 C -0.11 -4.35 10.09 23.41 0.24 -4.12 15 18 C -0.08 -3.73 6.03 -20.29 -0.12 -3.86 15 19 C -0.03 -1.68 6.80 23.59 0.16 -1.52 15 20 O -0.49 -23.19 12.65 -88.32 -1.12 -24.31 15 21 H 0.29 13.12 8.30 -92.71 -0.77 12.35 15 22 H 0.12 6.39 6.20 -2.91 -0.02 6.37 15 23 H 0.12 4.97 8.06 -2.91 -0.02 4.95 15 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 15 25 H 0.09 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.40 4.80 9.12 -74.06 -0.68 4.12 15 27 H 0.15 5.23 8.06 -2.91 -0.02 5.20 15 28 H 0.37 14.31 9.06 -74.06 -0.67 13.64 15 Total: -1.00 -65.12 264.93 -0.27 -65.39 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.12 Total: 27.67 kcal Atomic # 6 Polarization: -53.96 SS G_CDS: 2.04 Total: -51.92 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.24 Total: -40.28 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -3.15 Total: -40.76 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.31 Total: 0.89 kcal Total: -65.12 -0.27 -65.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330687.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.447 kcal (2) G-P(sol) polarization free energy of solvation -65.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds