Wall clock time and date at job start Mon Mar 30 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31080 * 1 3 3 Si 1.86799 * 120.00346 * 2 1 4 4 H 1.48498 * 109.47563 * 240.00009 * 3 2 1 5 5 H 1.48504 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47330 * 119.99763 * 3 2 1 7 7 C 1.39707 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99892 * 164.90953 * 7 2 1 9 9 C 1.40810 * 119.99577 * 344.91230 * 7 2 1 10 10 C 1.36449 * 123.30199 * 339.17796 * 9 7 2 11 11 S 1.69988 * 111.92937 * 179.73937 * 10 9 7 12 12 C 1.75775 * 93.22797 * 0.34220 * 11 10 9 13 13 C 1.39241 * 110.20737 * 359.66042 * 12 11 10 14 14 C 1.40661 * 119.27740 * 180.29086 * 13 12 11 15 15 C 1.37462 * 120.42193 * 359.93497 * 14 13 12 16 16 C 1.38568 * 120.31353 * 0.04153 * 15 14 13 17 17 C 1.50703 * 119.93654 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47144 * 0.02562 * 17 16 15 19 19 C 1.38141 * 120.12563 * 359.97438 * 16 15 14 20 20 O 1.35920 * 119.86440 * 179.97438 * 19 16 15 21 21 H 0.97000 * 119.99367 * 0.02562 * 1 2 3 22 22 H 1.07994 * 124.03537 * 0.03593 * 10 9 7 23 23 H 1.08002 * 119.78656 * 179.97438 * 14 13 12 24 24 H 1.08008 * 119.84022 * 180.02562 * 15 14 13 25 25 H 1.08995 * 109.47496 * 120.02203 * 17 16 15 26 26 H 1.08995 * 109.46862 * 240.02121 * 17 16 15 27 27 H 0.96701 * 113.99784 * 180.02562 * 18 17 16 28 28 H 0.96701 * 114.00630 * 270.02701 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.0987 1.6964 -1.2124 5 1 1.2800 2.7465 0.0006 6 1 3.0987 1.6964 1.2126 7 6 2.0093 -1.2099 0.0005 8 1 3.0614 -1.2261 -0.2430 9 6 1.3416 -2.4081 0.3185 10 6 0.1706 -2.4504 1.0175 11 16 -0.3836 -4.0431 1.2320 12 6 0.9828 -4.7398 0.3734 13 6 1.8367 -3.7329 -0.0693 14 6 2.9948 -4.0799 -0.7884 15 6 3.2823 -5.3983 -1.0507 16 6 2.4330 -6.4005 -0.6099 17 6 2.7561 -7.8430 -0.9028 18 8 3.9779 -7.9172 -1.6403 19 6 1.2906 -6.0798 0.0976 20 8 0.4610 -7.0671 0.5270 21 1 -0.4849 0.8401 -0.0004 22 1 -0.3453 -1.5762 1.3861 23 1 3.6626 -3.3056 -1.1360 24 1 4.1743 -5.6541 -1.6034 25 1 2.8639 -8.3888 0.0345 26 1 1.9502 -8.2840 -1.4894 27 1 4.2478 -8.8183 -1.8645 28 1 -0.2325 -7.3009 -0.1050 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330720.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:22 Heat of formation + Delta-G solvation = -63.383988 kcal Electronic energy + Delta-G solvation = -15461.954804 eV Core-core repulsion = 12761.864279 eV Total energy + Delta-G solvation = -2700.090525 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.34820 -36.73060 -36.61510 -34.49293 -32.33383 -29.45269 -29.02550 -25.98868 -25.08333 -22.13803 -21.21995 -19.66613 -17.91321 -17.30605 -16.54531 -16.09405 -15.14930 -14.87252 -14.65186 -14.33567 -14.22980 -13.35017 -12.98320 -12.50710 -12.26517 -11.70036 -11.44997 -11.18111 -11.12754 -10.75262 -10.59202 -10.44933 -10.14848 -10.02546 -9.70018 -9.36276 -9.15835 -8.31786 -7.37104 -6.73915 -6.62006 -4.28649 1.68550 1.94792 2.82601 2.98448 3.08871 3.12187 3.64653 3.82713 3.99627 4.32841 4.35719 4.69715 5.23924 5.29911 5.42438 5.61372 5.75643 6.06336 6.14338 6.37799 6.58877 6.94441 6.97187 7.12212 7.19603 7.41810 7.69025 7.72447 7.95067 8.05687 8.47168 8.78092 8.88741 10.28023 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030375 B = 0.006962 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.594123 B = 4021.109755 C = 4872.853874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.070 3.930 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.436 4.436 8 H 0.075 0.925 9 C 0.077 3.923 10 C -0.356 4.356 11 S 0.054 5.946 12 C -0.167 4.167 13 C -0.048 4.048 14 C -0.084 4.084 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.134 3.866 18 O -0.569 6.569 19 C 0.124 3.876 20 O -0.496 6.496 21 H 0.278 0.722 22 H 0.161 0.839 23 H 0.122 0.878 24 H 0.128 0.872 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.376 0.624 28 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -10.031 -2.275 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.469 4.469 8 H 0.094 0.906 9 C 0.069 3.931 10 C -0.491 4.491 11 S 0.317 5.683 12 C -0.282 4.282 13 C -0.058 4.058 14 C -0.103 4.103 15 C -0.131 4.131 16 C -0.128 4.128 17 C 0.057 3.943 18 O -0.374 6.374 19 C 0.074 3.926 20 O -0.305 6.305 21 H 0.089 0.911 22 H 0.179 0.821 23 H 0.140 0.860 24 H 0.146 0.854 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.223 0.777 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.287 -9.664 -0.964 9.796 hybrid contribution 1.172 0.929 -1.185 1.908 sum 2.459 -8.734 -2.149 9.325 Atomic orbital electron populations 1.69869 1.07346 1.28728 1.36558 1.25774 0.94795 1.01002 0.93041 0.86312 0.79945 0.80290 0.79816 1.19125 1.20445 1.18978 1.18897 0.96621 0.90186 1.41165 0.90639 1.17330 0.93056 0.89601 0.93129 1.24378 1.08238 0.97139 1.19393 1.81908 1.24375 1.01320 1.60648 1.22956 1.02370 0.95342 1.07571 1.19727 0.94501 0.93674 0.97934 1.20946 0.95860 0.95687 0.97828 1.20454 0.99840 0.91365 1.01452 1.19477 0.96892 0.94716 1.01759 1.20583 0.85572 0.93653 0.94498 1.86479 1.41581 1.32555 1.76752 1.17305 0.91571 0.84779 0.98988 1.84799 1.45173 1.54363 1.46163 0.91139 0.82149 0.86023 0.85380 0.92536 0.93165 0.77718 0.76681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.12 10.89 55.54 0.61 -20.51 15 2 C 0.07 1.79 5.31 -17.32 -0.09 1.70 15 3 Si 0.91 19.09 29.59 -169.99 -5.03 14.06 15 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.28 -5.72 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 7 C -0.44 -11.66 9.06 -38.06 -0.34 -12.01 15 8 H 0.08 1.91 7.67 -52.49 -0.40 1.51 15 9 C 0.08 2.09 5.69 -106.18 -0.60 1.49 15 10 C -0.36 -9.46 9.52 30.09 0.29 -9.17 15 11 S 0.05 1.24 22.93 -107.50 -2.46 -1.23 15 12 C -0.17 -3.81 6.39 -38.46 -0.25 -4.06 15 13 C -0.05 -1.17 6.02 -105.22 -0.63 -1.80 15 14 C -0.08 -1.79 9.86 -38.95 -0.38 -2.17 15 15 C -0.11 -2.07 9.34 -39.74 -0.37 -2.45 15 16 C -0.13 -2.27 5.89 -104.53 -0.62 -2.89 15 17 C 0.13 1.84 6.88 36.01 0.25 2.08 15 18 O -0.57 -7.20 12.13 -35.23 -0.43 -7.63 15 19 C 0.12 2.42 6.70 -38.87 -0.26 2.16 15 20 O -0.50 -8.19 12.87 -19.49 -0.25 -8.44 15 21 H 0.28 6.74 8.30 -40.82 -0.34 6.40 15 22 H 0.16 4.49 6.31 -52.49 -0.33 4.16 15 23 H 0.12 2.44 7.84 -52.49 -0.41 2.03 15 24 H 0.13 2.20 7.00 -52.48 -0.37 1.84 15 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 27 H 0.38 2.66 9.12 45.56 0.42 3.08 15 28 H 0.38 4.50 9.06 45.56 0.41 4.91 15 LS Contribution 261.97 15.07 3.95 3.95 Total: -1.00 -30.73 261.97 -7.30 -38.03 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -0.66 Total: 8.89 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -3.02 Total: -27.11 kcal Atomic # 7 Polarization: -21.12 SS G_CDS: 0.61 Total: -20.51 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.68 Total: -16.07 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.46 Total: -1.23 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.73 -7.30 -38.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330720.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.354 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds