Wall clock time and date at job start Mon Mar 30 2020 06:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30963 * 1 3 3 Si 1.86802 * 120.00516 * 2 1 4 4 H 1.48498 * 109.46715 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47280 * 119.99904 * 3 2 1 6 6 H 1.48502 * 109.46917 * 239.99836 * 3 2 1 7 7 C 1.39812 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00244 * 152.13613 * 7 2 1 9 9 C 1.40813 * 119.99823 * 332.14272 * 7 2 1 10 10 C 1.42304 * 120.03481 * 323.24346 * 9 7 2 11 11 S 1.75911 * 130.48372 * 359.95996 * 10 9 7 12 12 C 1.75310 * 92.15600 * 180.02562 * 11 10 9 13 13 C 1.31930 * 111.27234 * 359.97438 * 12 11 10 14 14 C 1.39153 * 119.73531 * 180.02562 * 10 9 7 15 15 C 1.42008 * 118.94943 * 359.97438 * 14 10 9 16 16 O 1.35577 * 119.61394 * 180.02562 * 15 14 10 17 17 C 1.38520 * 120.76309 * 0.02562 * 15 14 10 18 18 C 1.37666 * 120.67184 * 359.74793 * 17 15 14 19 19 C 1.50701 * 120.02313 * 180.26610 * 18 17 15 20 20 O 1.42904 * 109.47427 * 0.24797 * 19 18 17 21 21 H 0.96993 * 120.00605 * 177.64996 * 1 2 3 22 22 H 1.07998 * 124.36209 * 180.02562 * 12 11 10 23 23 H 1.07994 * 122.55956 * 179.97438 * 13 12 11 24 24 H 0.96702 * 114.00419 * 90.00042 * 16 15 14 25 25 H 1.08000 * 119.66311 * 179.97438 * 17 15 14 26 26 H 1.09002 * 109.47661 * 120.25375 * 19 18 17 27 27 H 1.09002 * 109.47220 * 240.24917 * 19 18 17 28 28 H 0.96699 * 114.00170 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2438 1.6177 0.0000 4 1 1.2788 2.7464 -0.0006 5 1 3.0975 1.6963 1.2124 6 1 3.0976 1.6962 -1.2125 7 6 2.0086 -1.2108 0.0005 8 1 2.9947 -1.2653 -0.4366 9 6 1.4269 -2.3593 0.5709 10 6 0.6257 -2.2455 1.7415 11 16 0.1865 -0.8318 2.6918 12 6 -0.7527 -1.7964 3.8146 13 6 -0.7272 -3.0738 3.4859 14 6 0.0543 -3.3846 2.3002 15 6 0.2857 -4.6428 1.6837 16 8 -0.2649 -5.7613 2.2164 17 6 1.0676 -4.7404 0.5444 18 6 1.6329 -3.6181 -0.0176 19 6 2.4761 -3.7404 -1.2607 20 8 2.5345 -5.1101 -1.6639 21 1 -0.4851 -0.8392 -0.0344 22 1 -1.2843 -1.3963 4.6653 23 1 -1.2457 -3.8309 4.0553 24 1 -1.1424 -5.9718 1.8687 25 1 1.2323 -5.7064 0.0903 26 1 2.0342 -3.1449 -2.0596 27 1 3.4835 -3.3795 -1.0534 28 1 3.0623 -5.2638 -2.4594 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330892.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:35 Heat of formation + Delta-G solvation = -68.319549 kcal Electronic energy + Delta-G solvation = -15967.319231 eV Core-core repulsion = 13267.014684 eV Total energy + Delta-G solvation = -2700.304547 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.77659 -36.58555 -35.81159 -34.72764 -33.02444 -29.14052 -28.84359 -25.45699 -24.52717 -21.94285 -21.07609 -19.38692 -18.01704 -17.44317 -16.89590 -15.30638 -14.97972 -14.36074 -14.28232 -14.06359 -13.97079 -13.47076 -12.94387 -12.67784 -12.21005 -11.97867 -11.45694 -11.04510 -10.96787 -10.80275 -10.48570 -10.17663 -10.08055 -9.73131 -9.38339 -9.32575 -8.85138 -8.28839 -7.52360 -7.32931 -6.46623 -4.63363 1.76444 2.50573 2.70461 3.05402 3.11054 3.23037 3.28975 3.34884 3.91316 4.34352 4.90081 4.98311 5.39056 5.50863 5.96318 6.08438 6.19868 6.26624 6.31601 6.64108 6.72520 6.92774 7.07056 7.16144 7.46035 7.56968 7.60129 7.84075 7.84373 8.21855 8.36729 8.57442 8.75277 9.85941 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.012550 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.279810 B = 2230.599027 C = 3618.972532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.032 3.968 3 Si 1.055 2.945 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.084 0.916 9 C 0.131 3.869 10 C -0.198 4.198 11 S 0.104 5.896 12 C -0.230 4.230 13 C -0.125 4.125 14 C -0.060 4.060 15 C -0.013 4.013 16 O -0.497 6.497 17 C -0.067 4.067 18 C -0.190 4.190 19 C 0.150 3.850 20 O -0.578 6.578 21 H 0.298 0.702 22 H 0.148 0.852 23 H 0.125 0.875 24 H 0.356 0.644 25 H 0.115 0.885 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -1.009 -0.122 1.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.192 4.192 3 Si 0.878 3.122 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.314 4.314 11 S 0.369 5.631 12 C -0.365 4.365 13 C -0.157 4.157 14 C -0.068 4.068 15 C -0.060 4.060 16 O -0.304 6.304 17 C -0.087 4.087 18 C -0.195 4.195 19 C 0.074 3.926 20 O -0.382 6.382 21 H 0.111 0.889 22 H 0.166 0.834 23 H 0.142 0.858 24 H 0.208 0.792 25 H 0.133 0.867 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.767 2.150 0.726 2.396 hybrid contribution -0.332 -3.156 -0.556 3.222 sum 0.435 -1.006 0.170 1.109 Atomic orbital electron populations 1.70520 1.07961 1.34161 1.25625 1.26943 0.95563 1.04245 0.92480 0.83728 0.76058 0.74051 0.78339 1.19405 1.19527 1.20001 1.20350 1.04682 0.94134 1.35982 0.89767 1.16650 0.89759 0.92515 0.88611 1.22459 1.12364 0.94551 1.01984 1.84108 1.50711 1.08820 1.19429 1.25279 1.07561 0.98481 1.05135 1.20763 1.01893 0.95688 0.97394 1.19276 0.98943 0.93091 0.95462 1.17780 1.06504 0.83423 0.98292 1.84798 1.35169 1.43122 1.67270 1.20495 0.96785 0.98161 0.93220 1.19154 1.08708 0.92964 0.98698 1.20488 0.97230 0.80451 0.94469 1.86451 1.75375 1.27940 1.48415 0.88943 0.83394 0.85763 0.79206 0.86746 0.93434 0.94070 0.78634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.10 11.61 55.54 0.64 -18.46 15 2 C 0.03 0.76 3.97 -17.33 -0.07 0.69 15 3 Si 1.06 20.78 30.01 -169.99 -5.10 15.68 15 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 7 C -0.52 -12.99 8.09 -38.02 -0.31 -13.30 15 8 H 0.08 2.01 7.37 -52.49 -0.39 1.62 15 9 C 0.13 3.33 5.01 -106.52 -0.53 2.80 15 10 C -0.20 -4.97 5.28 -37.68 -0.20 -5.17 15 11 S 0.10 2.38 19.88 -107.50 -2.14 0.24 15 12 C -0.23 -4.62 11.03 28.82 0.32 -4.30 15 13 C -0.13 -2.64 10.26 -38.66 -0.40 -3.04 15 14 C -0.06 -1.44 6.04 -105.28 -0.64 -2.07 15 15 C -0.01 -0.30 6.78 -38.03 -0.26 -0.56 15 16 O -0.50 -10.27 13.37 -18.43 -0.25 -10.52 15 17 C -0.07 -1.57 9.25 -39.69 -0.37 -1.94 15 18 C -0.19 -4.57 5.93 -103.99 -0.62 -5.18 15 19 C 0.15 3.05 6.34 36.01 0.23 3.27 15 20 O -0.58 -10.37 12.12 -35.23 -0.43 -10.80 15 21 H 0.30 7.86 7.12 -40.82 -0.29 7.57 15 22 H 0.15 2.43 8.06 -52.49 -0.42 2.00 15 23 H 0.12 2.32 8.06 -52.49 -0.42 1.89 15 24 H 0.36 5.69 9.06 45.56 0.41 6.10 15 25 H 0.11 2.58 6.97 -52.49 -0.37 2.21 15 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 27 H 0.04 0.80 7.81 -51.93 -0.41 0.40 15 28 H 0.37 4.45 9.12 45.56 0.42 4.87 15 LS Contribution 258.00 15.07 3.89 3.89 Total: -1.00 -29.00 258.00 -6.90 -35.90 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -0.68 Total: 12.85 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -2.84 Total: -28.79 kcal Atomic # 7 Polarization: -19.10 SS G_CDS: 0.64 Total: -18.46 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.67 Total: -21.31 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.10 Total: 15.68 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.14 Total: 0.24 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.00 -6.90 -35.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330892.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.420 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds