Wall clock time and date at job start Mon Mar 30 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30806 * 1 3 3 Si 1.86800 * 120.00341 * 2 1 4 4 H 1.48501 * 109.47298 * 239.99928 * 3 2 1 5 5 H 1.48505 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47384 * 119.99931 * 3 2 1 7 7 C 1.40114 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99979 * 179.72458 * 7 2 1 9 9 C 1.39895 * 120.00084 * 0.02562 * 7 2 1 10 10 S 1.75465 * 124.84110 * 359.41832 * 9 7 2 11 11 C 1.76009 * 91.77234 * 179.97438 * 10 9 7 12 12 C 1.39573 * 130.17438 * 180.02562 * 11 10 9 13 13 C 1.37766 * 120.57776 * 180.35915 * 12 11 10 14 14 C 1.38750 * 120.31974 * 359.93775 * 13 12 11 15 15 C 1.37576 * 120.42859 * 359.97438 * 14 13 12 16 16 O 1.35739 * 119.89325 * 180.02562 * 15 14 13 17 17 C 1.40290 * 109.93718 * 0.31982 * 11 10 9 18 18 C 1.37008 * 124.84531 * 179.72680 * 9 7 2 19 19 C 1.50704 * 122.48236 * 359.97438 * 18 9 7 20 20 O 1.42896 * 109.47129 * 89.97777 * 19 18 9 21 21 H 0.97009 * 119.99606 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.70970 * 0.32417 * 12 11 10 23 23 H 1.08003 * 119.84200 * 179.97438 * 13 12 11 24 24 H 1.07995 * 119.78940 * 180.02562 * 14 13 12 25 25 H 0.96701 * 114.00686 * 270.03248 * 16 15 14 26 26 H 1.08998 * 109.46884 * 209.97901 * 19 18 9 27 27 H 1.09003 * 109.46951 * 329.97540 * 19 18 9 28 28 H 0.96698 * 114.00292 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6963 -1.2125 5 1 1.2771 2.7464 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0086 -1.2134 0.0005 8 1 3.0886 -1.2135 -0.0040 9 6 1.3091 -2.4250 0.0005 10 16 -0.4392 -2.5730 0.0145 11 6 -0.3451 -4.3306 0.0044 12 6 -1.3618 -5.2868 0.0075 13 6 -1.0598 -6.6309 0.0053 14 6 0.2623 -7.0517 -0.0012 15 6 1.2861 -6.1327 -0.0061 16 8 2.5756 -6.5564 -0.0130 17 6 0.9974 -4.7377 -0.0017 18 6 1.8914 -3.6651 -0.0043 19 6 3.3861 -3.8573 -0.0109 20 8 3.8642 -3.9202 1.3343 21 1 -0.4850 0.8402 -0.0004 22 1 -2.3944 -4.9701 0.0121 23 1 -1.8560 -7.3607 0.0081 24 1 0.4893 -8.1075 -0.0032 25 1 2.9538 -6.6801 0.8683 26 1 3.6308 -4.7856 -0.5272 27 1 3.8579 -3.0202 -0.5254 28 1 4.8207 -4.0429 1.4064 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330898.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:30 Heat of formation + Delta-G solvation = -78.300546 kcal Electronic energy + Delta-G solvation = -15820.934892 eV Core-core repulsion = 13120.197537 eV Total energy + Delta-G solvation = -2700.737356 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.82766 -36.20034 -35.66886 -34.68927 -33.14039 -29.24162 -28.59022 -26.57576 -24.45194 -21.91952 -21.26617 -18.85266 -17.80792 -17.09979 -16.39376 -15.70276 -15.46232 -14.62880 -14.47805 -13.96586 -13.43043 -13.11333 -12.76967 -12.37643 -12.08222 -11.76152 -11.57173 -11.46649 -11.15147 -10.74117 -10.62999 -10.33900 -10.15782 -9.58491 -9.37177 -9.05557 -8.78887 -8.22207 -7.43931 -7.25993 -6.38595 -4.73996 1.98147 2.30848 2.78821 2.80812 2.85309 3.21061 3.43489 3.52863 3.76753 4.52876 4.79440 5.23492 5.69978 5.78710 5.92498 6.11716 6.34912 6.43704 6.61330 6.63713 6.75182 6.99364 7.07352 7.23659 7.40464 7.51856 7.65487 7.74391 7.92490 8.19565 8.35806 8.57669 8.62363 9.56652 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.008790 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.255716 B = 3184.776405 C = 4093.431367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.052 3.948 3 Si 0.940 3.060 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.369 4.369 8 H 0.101 0.899 9 C 0.068 3.932 10 S 0.141 5.859 11 C -0.256 4.256 12 C -0.060 4.060 13 C -0.186 4.186 14 C -0.132 4.132 15 C 0.059 3.941 16 O -0.496 6.496 17 C 0.017 3.983 18 C -0.331 4.331 19 C 0.167 3.833 20 O -0.576 6.576 21 H 0.303 0.697 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.370 0.630 26 H 0.047 0.953 27 H 0.029 0.971 28 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 -1.585 0.507 2.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.170 4.170 3 Si 0.763 3.237 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.402 4.402 8 H 0.119 0.881 9 C -0.051 4.051 10 S 0.403 5.597 11 C -0.370 4.370 12 C -0.082 4.082 13 C -0.206 4.206 14 C -0.153 4.153 15 C 0.014 3.986 16 O -0.305 6.305 17 C 0.009 3.991 18 C -0.338 4.338 19 C 0.089 3.911 20 O -0.380 6.380 21 H 0.117 0.883 22 H 0.122 0.878 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.224 0.776 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.288 -0.277 0.019 0.400 hybrid contribution 2.059 -0.476 0.383 2.148 sum 1.772 -0.753 0.402 1.966 Atomic orbital electron populations 1.68648 1.07832 1.31363 1.31889 1.26374 0.95151 1.03179 0.92322 0.85772 0.79731 0.77626 0.80588 1.18241 1.19614 1.18192 1.19346 0.95871 0.88495 1.36529 0.88105 1.21297 0.94824 0.95460 0.93564 1.84810 1.04793 0.91476 1.78623 1.23553 0.95798 1.02515 1.15179 1.20178 0.96599 0.91914 0.99528 1.20311 0.95137 0.94785 1.10413 1.20731 0.92776 0.97879 1.03946 1.18329 0.82882 0.89812 1.07601 1.84731 1.25061 1.88336 1.32360 1.18056 0.92186 0.92302 0.96589 1.17922 0.93180 0.90307 1.32354 1.20294 0.91284 0.97876 0.81683 1.86721 1.24943 1.96531 1.29756 0.88343 0.87830 0.87472 0.87456 0.77650 0.93473 0.95298 0.80422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.82 10.58 55.56 0.59 -17.23 15 2 C 0.05 1.17 5.50 -17.28 -0.10 1.08 15 3 Si 0.94 16.80 29.56 -169.99 -5.03 11.78 15 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 5 H -0.27 -4.67 7.11 56.52 0.40 -4.27 15 6 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 7 C -0.37 -9.12 8.82 -38.26 -0.34 -9.46 15 8 H 0.10 2.38 6.67 -52.48 -0.35 2.03 15 9 C 0.07 1.79 6.11 -39.41 -0.24 1.55 15 10 S 0.14 3.50 20.13 -107.50 -2.16 1.33 15 11 C -0.26 -6.27 6.47 -38.31 -0.25 -6.52 15 12 C -0.06 -1.28 10.05 -39.26 -0.39 -1.68 15 13 C -0.19 -3.67 10.03 -39.56 -0.40 -4.07 15 14 C -0.13 -2.69 9.93 -39.63 -0.39 -3.09 15 15 C 0.06 1.34 6.78 -38.20 -0.26 1.09 15 16 O -0.50 -10.04 10.84 -18.93 -0.21 -10.24 15 17 C 0.02 0.43 5.85 -106.98 -0.63 -0.20 15 18 C -0.33 -8.48 5.58 -104.55 -0.58 -9.07 15 19 C 0.17 3.70 6.40 36.01 0.23 3.94 15 20 O -0.58 -11.97 13.64 -35.23 -0.48 -12.45 15 21 H 0.30 6.24 8.30 -40.82 -0.34 5.91 15 22 H 0.10 1.97 8.06 -52.49 -0.42 1.55 15 23 H 0.11 1.76 8.06 -52.48 -0.42 1.34 15 24 H 0.11 1.88 8.06 -52.49 -0.42 1.46 15 25 H 0.37 6.15 9.06 45.56 0.41 6.57 15 26 H 0.05 1.01 6.07 -51.93 -0.32 0.70 15 27 H 0.03 0.62 6.90 -51.93 -0.36 0.27 15 28 H 0.35 5.23 9.12 45.56 0.42 5.64 15 LS Contribution 257.87 15.07 3.89 3.89 Total: -1.00 -29.16 257.87 -7.34 -36.50 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -0.60 Total: 12.84 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -3.34 Total: -26.42 kcal Atomic # 7 Polarization: -17.82 SS G_CDS: 0.59 Total: -17.23 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.69 Total: -22.69 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.78 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.16 Total: 1.33 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.16 -7.34 -36.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330898.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.796 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds