Wall clock time and date at job start Mon Mar 30 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86795 * 120.00175 * 2 1 4 4 H 1.48493 * 109.47617 * 269.99877 * 3 2 1 5 5 H 1.48504 * 109.46911 * 30.00228 * 3 2 1 6 6 H 1.48506 * 109.46769 * 149.99828 * 3 2 1 7 7 C 1.39897 * 119.99492 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99760 * 163.23436 * 7 2 1 9 9 C 1.40861 * 120.00375 * 343.23031 * 7 2 1 10 10 C 1.40368 * 120.23670 * 334.27454 * 9 7 2 11 11 C 1.38764 * 120.05261 * 180.02562 * 10 9 7 12 12 S 1.76070 * 130.38746 * 179.97438 * 11 10 9 13 13 C 1.75470 * 91.55997 * 179.97438 * 12 11 10 14 14 C 1.32436 * 110.87814 * 359.97438 * 13 12 11 15 15 C 1.40439 * 120.26224 * 359.92853 * 11 10 9 16 16 C 1.41804 * 119.08543 * 0.02888 * 15 11 10 17 17 C 1.50702 * 119.58878 * 179.97438 * 16 15 11 18 18 O 1.42900 * 109.46921 * 90.00021 * 17 16 15 19 19 C 1.35786 * 120.82665 * 359.97438 * 16 15 11 20 20 O 1.35821 * 119.87874 * 180.02562 * 19 16 15 21 21 H 0.96994 * 119.99925 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.97106 * 0.02562 * 10 9 7 23 23 H 1.07997 * 124.55828 * 179.73472 * 13 12 11 24 24 H 1.07997 * 122.05806 * 180.02562 * 14 13 12 25 25 H 1.08996 * 109.47077 * 209.99911 * 17 16 15 26 26 H 1.09001 * 109.46871 * 329.99970 * 17 16 15 27 27 H 0.96701 * 113.99629 * 180.02562 * 18 17 16 28 28 H 0.96703 * 113.99776 * 89.99852 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4907 2.0464 -1.4000 5 1 1.4405 2.6526 0.7001 6 1 3.5407 1.4400 0.7001 7 6 2.0085 -1.2116 -0.0005 8 1 3.0541 -1.2314 -0.2704 9 6 1.3491 -2.4057 0.3509 10 6 0.2237 -2.3714 1.1891 11 6 -0.4227 -3.5501 1.5333 12 16 -1.8345 -3.8222 2.5496 13 6 -1.7494 -5.5550 2.2865 14 6 -0.7326 -5.8630 1.4957 15 6 0.0434 -4.7815 1.0448 16 6 1.1808 -4.8013 0.1982 17 6 1.6910 -6.1165 -0.3320 18 8 1.0526 -6.4081 -1.5767 19 6 1.8160 -3.6501 -0.1408 20 8 2.9035 -3.6914 -0.9535 21 1 -0.4850 0.8400 0.0004 22 1 -0.1394 -1.4268 1.5665 23 1 -2.4319 -6.2739 2.7151 24 1 -0.5133 -6.8824 1.2147 25 1 2.7688 -6.0542 -0.4822 26 1 1.4692 -6.9076 0.3843 27 1 1.3334 -7.2426 -1.9767 28 1 2.6938 -3.6218 -1.8949 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:43 Heat of formation + Delta-G solvation = -82.654450 kcal Electronic energy + Delta-G solvation = -15813.620147 eV Core-core repulsion = 13112.693991 eV Total energy + Delta-G solvation = -2700.926155 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72242 -38.00414 -37.54917 -36.33066 -34.21839 -31.95820 -30.38917 -27.12107 -26.40450 -24.02659 -22.44360 -21.30431 -19.11635 -18.50373 -18.32537 -18.03903 -17.09313 -16.76105 -15.92213 -15.38515 -14.89229 -14.80398 -14.57207 -14.15333 -13.80141 -13.51216 -13.36649 -13.03022 -12.73562 -12.47945 -12.21695 -11.94640 -11.60708 -11.46865 -10.99213 -10.90908 -10.85061 -10.19734 -9.16555 -8.77433 -8.40350 -6.39007 0.12240 0.66947 0.96518 1.31446 1.37744 1.39941 1.52165 1.78670 2.15190 2.57581 3.28092 3.64358 3.89114 4.15210 4.28746 4.38943 4.53962 4.59825 4.90827 4.99995 5.14687 5.21242 5.27784 5.41326 5.70510 5.85272 5.94886 6.02674 6.35339 6.67633 6.71054 6.99749 7.18044 8.17135 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.009180 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.028629 B = 3049.443587 C = 4199.045553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.032 3.968 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.459 4.459 8 H 0.088 0.912 9 C 0.072 3.928 10 C -0.175 4.175 11 C -0.110 4.110 12 S 0.010 5.990 13 C -0.237 4.237 14 C -0.088 4.088 15 C -0.190 4.190 16 C -0.069 4.069 17 C 0.133 3.867 18 O -0.582 6.582 19 C 0.024 3.976 20 O -0.494 6.494 21 H 0.294 0.706 22 H 0.106 0.894 23 H 0.188 0.812 24 H 0.151 0.849 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.395 0.605 28 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -7.021 -0.066 7.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.487 4.487 8 H 0.106 0.894 9 C 0.066 3.934 10 C -0.202 4.202 11 C -0.225 4.225 12 S 0.270 5.730 13 C -0.370 4.370 14 C -0.117 4.117 15 C -0.196 4.196 16 C -0.072 4.072 17 C 0.056 3.944 18 O -0.391 6.391 19 C -0.022 4.022 20 O -0.303 6.303 21 H 0.105 0.895 22 H 0.124 0.876 23 H 0.206 0.794 24 H 0.169 0.831 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.245 0.755 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.445 -5.549 1.417 5.744 hybrid contribution 1.040 -0.355 -1.367 1.754 sum 0.596 -5.904 0.051 5.934 Atomic orbital electron populations 1.69909 1.09270 1.31297 1.32887 1.26939 0.95502 1.05004 0.91084 0.85087 0.79005 0.75158 0.79860 1.18139 1.19001 1.18113 1.19749 0.98266 0.91512 1.39180 0.89359 1.18091 0.91765 0.93065 0.90506 1.20350 1.01223 0.94794 1.03784 1.22673 0.99592 0.97585 1.02664 1.83575 1.30348 1.04801 1.54279 1.25033 1.05839 0.96990 1.09127 1.19905 0.94953 0.99035 0.97845 1.17908 1.00907 0.92233 1.08573 1.19446 0.94461 0.94887 0.98439 1.20760 0.95618 0.92529 0.85510 1.86565 1.69359 1.46052 1.37103 1.17989 0.92625 0.92040 0.99563 1.84628 1.29653 1.95691 1.20341 0.89547 0.87570 0.79443 0.83105 0.91989 0.91519 0.75517 0.76284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.73 10.97 21.82 0.24 -41.49 15 2 C 0.03 1.57 5.14 85.23 0.44 2.01 15 3 Si 0.99 37.02 29.59 68.60 2.03 39.05 15 4 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 5 H -0.27 -9.49 7.11 99.48 0.71 -8.79 15 6 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 7 C -0.46 -24.19 8.69 23.31 0.20 -23.99 15 8 H 0.09 4.52 7.65 -2.91 -0.02 4.50 15 9 C 0.07 3.92 5.57 -21.26 -0.12 3.80 15 10 C -0.18 -9.59 8.70 22.91 0.20 -9.40 15 11 C -0.11 -5.51 6.46 22.93 0.15 -5.36 15 12 S 0.01 0.42 23.29 -56.49 -1.32 -0.90 15 13 C -0.24 -8.27 11.09 66.70 0.74 -7.53 15 14 C -0.09 -3.31 9.55 21.71 0.21 -3.10 15 15 C -0.19 -8.73 5.85 -21.30 -0.12 -8.86 15 16 C -0.07 -3.13 5.54 -19.55 -0.11 -3.24 15 17 C 0.13 4.52 6.70 71.24 0.48 4.99 15 18 O -0.58 -18.44 13.64 -148.98 -2.03 -20.47 15 19 C 0.02 1.16 6.63 22.56 0.15 1.31 15 20 O -0.49 -21.41 11.67 -91.54 -1.07 -22.48 15 21 H 0.29 13.61 8.30 -92.71 -0.77 12.84 15 22 H 0.11 6.07 6.18 -2.91 -0.02 6.06 15 23 H 0.19 4.91 8.06 -2.91 -0.02 4.88 15 24 H 0.15 4.62 7.33 -2.91 -0.02 4.60 15 25 H 0.06 1.99 7.44 -2.39 -0.02 1.97 15 26 H 0.07 1.93 7.11 -2.39 -0.02 1.92 15 27 H 0.40 7.41 9.12 -74.06 -0.68 6.74 15 28 H 0.38 13.96 9.06 -74.06 -0.67 13.28 15 Total: -1.00 -64.85 260.62 -0.05 -64.90 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.11 Total: 30.75 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 2.21 Total: -49.37 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.24 Total: -41.49 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -3.10 Total: -42.95 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.32 Total: -0.90 kcal Total: -64.85 -0.05 -64.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.754 kcal (2) G-P(sol) polarization free energy of solvation -64.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds