Wall clock time and date at job start Mon Mar 30 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86804 * 120.00217 * 2 1 4 4 H 1.48496 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46888 * 299.99706 * 3 2 1 6 6 H 1.48502 * 109.46864 * 59.99725 * 3 2 1 7 7 C 1.39843 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 163.80809 * 7 2 1 9 9 C 1.40991 * 119.99739 * 344.09177 * 7 2 1 10 10 C 1.40453 * 120.17443 * 333.09366 * 9 7 2 11 11 C 1.38913 * 120.07198 * 179.76875 * 10 9 7 12 12 S 1.76065 * 130.43108 * 180.18595 * 11 10 9 13 13 C 1.75474 * 91.53787 * 180.31884 * 12 11 10 14 14 C 1.32569 * 110.81877 * 0.02562 * 13 12 11 15 15 C 1.40288 * 120.19412 * 0.53646 * 11 10 9 16 16 C 1.42429 * 118.97987 * 359.72144 * 15 11 10 17 17 O 1.35838 * 119.62053 * 180.02562 * 16 15 11 18 18 C 1.35719 * 120.75997 * 359.97438 * 16 15 11 19 19 C 1.50698 * 119.82943 * 180.02562 * 18 16 15 20 20 O 1.42896 * 109.46951 * 270.02065 * 19 18 16 21 21 H 0.97004 * 120.00391 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.96986 * 0.02562 * 10 9 7 23 23 H 1.08003 * 124.59169 * 180.02562 * 13 12 11 24 24 H 1.08003 * 122.06270 * 180.02562 * 14 13 12 25 25 H 0.96707 * 113.99713 * 269.97514 * 17 16 15 26 26 H 1.09003 * 109.47033 * 30.01611 * 19 18 16 27 27 H 1.08999 * 109.47233 * 150.01942 * 19 18 16 28 28 H 0.96698 * 113.99854 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8843 2.3964 1.2125 7 6 2.0082 -1.2111 0.0005 8 1 3.0561 -1.2297 -0.2603 9 6 1.3437 -2.4085 0.3358 10 6 0.2217 -2.3807 1.1801 11 6 -0.4343 -3.5613 1.5052 12 16 -1.8468 -3.8410 2.5183 13 6 -1.7680 -5.5705 2.2324 14 6 -0.7506 -5.8708 1.4374 15 6 0.0270 -4.7866 1.0013 16 6 1.1695 -4.7967 0.1508 17 8 1.6270 -5.9758 -0.3448 18 6 1.8057 -3.6419 -0.1708 19 6 3.0123 -3.6769 -1.0729 20 8 4.1933 -3.8296 -0.2830 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1340 -1.4401 1.5739 23 1 -2.4554 -6.2926 2.6479 24 1 -0.5340 -6.8869 1.1424 25 1 2.2838 -6.4101 0.2166 26 1 2.9258 -4.5163 -1.7630 27 1 3.0708 -2.7466 -1.6379 28 1 5.0104 -3.8604 -0.7992 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396331708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:37 Heat of formation + Delta-G solvation = -61.884346 kcal Electronic energy + Delta-G solvation = -15845.031439 eV Core-core repulsion = 13145.005943 eV Total energy + Delta-G solvation = -2700.025496 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.07137 -36.19297 -36.05214 -34.83873 -32.79561 -29.73688 -28.54216 -25.81947 -24.52826 -22.06326 -21.09583 -19.00133 -18.30730 -16.74032 -16.71534 -15.98981 -15.28357 -15.04457 -14.33496 -13.91713 -13.58848 -13.13957 -12.61445 -12.36718 -12.17785 -12.05209 -11.63453 -11.40831 -11.04036 -10.82854 -10.39641 -10.21337 -10.11053 -9.86617 -9.39322 -9.24620 -9.13616 -8.37645 -7.40639 -7.03497 -6.65117 -4.57817 1.82908 2.47275 2.67383 2.85819 2.95901 3.01412 3.06362 3.46041 3.74580 4.31087 5.03141 5.12393 5.48991 5.71579 6.01065 6.08372 6.12048 6.30917 6.67704 6.73329 6.86104 6.91064 7.04639 7.18983 7.50291 7.54466 7.64426 7.86346 8.20515 8.26766 8.41107 8.56963 8.67665 9.89005 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020074 B = 0.009720 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.513800 B = 2879.852979 C = 4126.521060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.429 4.429 8 H 0.091 0.909 9 C 0.148 3.852 10 C -0.160 4.160 11 C -0.060 4.060 12 S 0.001 5.999 13 C -0.268 4.268 14 C -0.064 4.064 15 C -0.234 4.234 16 C 0.184 3.816 17 O -0.507 6.507 18 C -0.198 4.198 19 C 0.137 3.863 20 O -0.572 6.572 21 H 0.287 0.713 22 H 0.126 0.874 23 H 0.145 0.855 24 H 0.120 0.880 25 H 0.379 0.621 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 -3.232 0.161 4.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.458 4.458 8 H 0.109 0.891 9 C 0.141 3.859 10 C -0.186 4.186 11 C -0.175 4.175 12 S 0.260 5.740 13 C -0.401 4.401 14 C -0.094 4.094 15 C -0.240 4.240 16 C 0.137 3.863 17 O -0.316 6.316 18 C -0.200 4.200 19 C 0.060 3.940 20 O -0.376 6.376 21 H 0.098 0.902 22 H 0.144 0.856 23 H 0.163 0.837 24 H 0.138 0.862 25 H 0.233 0.767 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.736 -2.149 1.015 2.489 hybrid contribution 1.727 -0.342 -0.906 1.980 sum 2.463 -2.491 0.110 3.505 Atomic orbital electron populations 1.69859 1.07758 1.30043 1.31795 1.26077 0.94878 1.01940 0.92161 0.86133 0.81008 0.80118 0.78896 1.18019 1.19667 1.19342 1.19699 0.97919 0.90518 1.37657 0.89098 1.17155 0.90147 0.91147 0.87426 1.20612 0.99849 0.94735 1.03418 1.22230 0.97829 0.97027 1.00400 1.83646 1.31989 1.02983 1.55340 1.24491 1.06383 0.97781 1.11414 1.19639 0.94480 0.98436 0.96812 1.17923 1.03569 0.92397 1.10071 1.17622 0.92015 0.84064 0.92568 1.84648 1.61882 1.35347 1.49749 1.19331 1.00041 0.93439 1.07217 1.20656 0.82621 0.99098 0.91590 1.86621 1.16084 1.96857 1.38018 0.90187 0.85641 0.83743 0.86225 0.76686 0.94189 0.92682 0.79264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.84 10.99 55.54 0.61 -18.23 15 2 C 0.07 1.65 5.15 -17.35 -0.09 1.56 15 3 Si 0.91 17.39 29.59 -169.99 -5.03 12.36 15 4 H -0.26 -4.83 7.11 56.52 0.40 -4.42 15 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 7 C -0.43 -10.60 8.07 -37.94 -0.31 -10.91 15 8 H 0.09 2.16 6.87 -52.49 -0.36 1.80 15 9 C 0.15 3.81 5.54 -106.93 -0.59 3.21 15 10 C -0.16 -4.15 8.70 -38.50 -0.33 -4.49 15 11 C -0.06 -1.47 6.46 -38.56 -0.25 -1.72 15 12 S 0.00 0.02 23.29 -107.50 -2.50 -2.48 15 13 C -0.27 -5.23 11.09 28.83 0.32 -4.91 15 14 C -0.06 -1.32 9.96 -40.69 -0.41 -1.73 15 15 C -0.23 -5.54 5.90 -106.71 -0.63 -6.16 15 16 C 0.18 4.24 6.68 -38.87 -0.26 3.98 15 17 O -0.51 -9.95 12.25 -19.23 -0.24 -10.19 15 18 C -0.20 -4.73 5.52 -104.44 -0.58 -5.31 15 19 C 0.14 2.76 6.28 36.00 0.23 2.98 15 20 O -0.57 -10.59 13.64 -35.23 -0.48 -11.07 15 21 H 0.29 6.31 8.30 -40.82 -0.34 5.97 15 22 H 0.13 3.34 6.24 -52.49 -0.33 3.02 15 23 H 0.14 2.34 8.06 -52.48 -0.42 1.92 15 24 H 0.12 2.18 8.06 -52.48 -0.42 1.76 15 25 H 0.38 5.81 9.06 45.56 0.41 6.22 15 26 H 0.04 0.75 7.44 -51.93 -0.39 0.36 15 27 H 0.06 1.10 6.76 -51.93 -0.35 0.75 15 28 H 0.36 4.61 9.12 45.56 0.42 5.03 15 LS Contribution 260.36 15.07 3.92 3.92 Total: -1.00 -28.93 260.36 -7.19 -36.12 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -0.58 Total: 13.07 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -2.90 Total: -23.50 kcal Atomic # 7 Polarization: -18.84 SS G_CDS: 0.61 Total: -18.23 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.72 Total: -21.26 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.50 Total: -2.48 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.93 -7.19 -36.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396331708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.763 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds