Wall clock time and date at job start Mon Mar 30 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30918 * 1 3 3 Si 1.86804 * 119.99803 * 2 1 4 4 H 1.48498 * 109.46926 * 269.99980 * 3 2 1 5 5 H 1.48494 * 109.47057 * 30.00255 * 3 2 1 6 6 H 1.48500 * 109.47227 * 150.00374 * 3 2 1 7 7 C 1.39866 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99793 * 197.88977 * 7 2 1 9 9 C 1.41112 * 120.00092 * 17.87934 * 7 2 1 10 10 C 1.39871 * 120.09412 * 25.14207 * 9 7 2 11 11 C 1.40383 * 120.20383 * 179.97438 * 10 9 7 12 12 C 1.45673 * 129.04528 * 179.69683 * 11 10 9 13 13 C 1.31618 * 114.90965 * 179.79141 * 12 11 10 14 14 C 1.50701 * 124.22115 * 180.18091 * 13 12 11 15 15 O 1.42899 * 109.47061 * 90.31018 * 14 13 12 16 16 S 1.75248 * 111.55874 * 0.48342 * 13 12 11 17 17 C 1.40287 * 119.24407 * 359.97438 * 11 10 9 18 18 C 1.40211 * 120.25043 * 359.97438 * 17 11 10 19 19 C 1.37299 * 120.66503 * 0.02562 * 18 17 11 20 20 O 1.35758 * 120.08485 * 179.97438 * 19 18 17 21 21 H 0.97000 * 120.00300 * 359.97438 * 1 2 3 22 22 H 1.07996 * 119.89965 * 359.95333 * 10 9 7 23 23 H 1.07998 * 122.54804 * 359.97438 * 12 11 10 24 24 H 1.08994 * 109.47256 * 210.31422 * 14 13 12 25 25 H 1.09005 * 109.47156 * 330.31444 * 14 13 12 26 26 H 0.96697 * 113.99841 * 180.02562 * 15 14 13 27 27 H 1.08001 * 119.66393 * 180.02562 * 18 17 11 28 28 H 0.96699 * 113.99768 * 274.92095 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 1.4406 2.6526 0.7001 6 1 3.5407 1.4403 0.7000 7 6 2.0086 -1.2112 -0.0005 8 1 3.0494 -1.2339 0.2868 9 6 1.3542 -2.4037 -0.3763 10 6 0.2398 -2.3562 -1.2202 11 6 -0.4126 -3.5411 -1.5959 12 6 -1.5795 -3.7148 -2.4503 13 6 -1.9597 -4.9631 -2.6223 14 6 -3.1356 -5.3823 -3.4665 15 8 -2.6997 -5.6192 -4.8066 16 16 -0.9330 -6.0764 -1.7404 17 6 0.0666 -4.7691 -1.1158 18 6 1.1849 -4.8094 -0.2710 19 6 1.8254 -3.6526 0.0985 20 8 2.9069 -3.7053 0.9175 21 1 -0.4850 0.8400 0.0004 22 1 -0.1201 -1.4050 -1.5837 23 1 -2.0920 -2.8828 -2.9102 24 1 -3.5687 -6.2955 -3.0585 25 1 -3.8857 -4.5914 -3.4629 26 1 -3.4061 -5.8928 -5.4074 27 1 1.5460 -5.7601 0.0928 28 1 2.6866 -3.7278 1.8588 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396331900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:08 Heat of formation + Delta-G solvation = -62.108400 kcal Electronic energy + Delta-G solvation = -15317.873688 eV Core-core repulsion = 12617.838477 eV Total energy + Delta-G solvation = -2700.035212 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.51331 -37.13606 -35.96816 -34.36714 -32.79313 -29.80051 -28.72482 -25.99117 -24.70174 -21.96115 -20.81427 -19.57626 -17.53831 -17.37187 -17.00321 -16.15431 -15.27845 -14.82250 -14.53844 -13.82957 -13.73042 -13.44183 -12.75372 -12.42920 -12.37660 -11.91166 -11.51229 -11.36675 -11.26487 -10.84448 -10.59470 -10.23724 -9.98460 -9.89283 -9.81878 -9.22570 -9.14668 -8.38594 -7.32092 -6.90319 -6.77189 -4.44353 1.68240 2.44005 2.55421 2.96916 3.00193 3.02617 3.06053 3.23194 3.84395 4.39304 4.59050 5.19382 5.23637 5.33777 5.51576 5.63838 5.86325 6.14708 6.41579 6.63626 6.77538 6.95675 7.02971 7.26810 7.28812 7.54098 7.67069 7.76536 7.96661 8.29760 8.59052 8.67495 8.95093 10.02586 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.006743 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.139950 B = 4151.733154 C = 4987.154473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.443 4.443 8 H 0.088 0.912 9 C 0.090 3.910 10 C -0.129 4.129 11 C -0.063 4.063 12 C -0.080 4.080 13 C -0.187 4.187 14 C 0.152 3.848 15 O -0.565 6.565 16 S 0.014 5.986 17 C -0.211 4.211 18 C -0.093 4.093 19 C 0.029 3.971 20 O -0.493 6.493 21 H 0.284 0.716 22 H 0.128 0.872 23 H 0.130 0.870 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.375 0.625 27 H 0.102 0.898 28 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 -4.353 -2.554 7.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.472 4.472 8 H 0.106 0.894 9 C 0.086 3.914 10 C -0.151 4.151 11 C -0.068 4.068 12 C -0.112 4.112 13 C -0.301 4.301 14 C 0.073 3.927 15 O -0.371 6.371 16 S 0.274 5.726 17 C -0.326 4.326 18 C -0.116 4.116 19 C -0.018 4.018 20 O -0.301 6.301 21 H 0.094 0.906 22 H 0.146 0.854 23 H 0.148 0.852 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.221 0.779 27 H 0.120 0.880 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.654 -5.571 -2.671 7.735 hybrid contribution -0.551 2.080 0.163 2.158 sum -5.205 -3.490 -2.508 6.750 Atomic orbital electron populations 1.69848 1.07634 1.29652 1.34148 1.25989 0.94783 1.01647 0.92150 0.86221 0.80500 0.80041 0.79525 1.19105 1.20241 1.18409 1.19524 0.98593 0.90580 1.38527 0.89380 1.17625 0.91423 0.91689 0.90641 1.21037 0.98932 0.95196 0.99938 1.19080 0.95368 0.93661 0.98695 1.20963 0.96122 0.95925 0.98175 1.23086 1.03640 0.96892 1.06493 1.20387 0.91997 0.98955 0.81337 1.86639 1.39115 1.91266 1.20046 1.83247 1.27942 1.10381 1.51033 1.21649 1.04295 0.94514 1.12114 1.20097 0.94571 0.97087 0.99885 1.18315 0.92089 0.92087 0.99282 1.84748 1.30091 1.96317 1.18906 0.90554 0.85441 0.85246 0.92968 0.92258 0.77877 0.88002 0.78188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.51 10.99 55.54 0.61 -18.89 15 2 C 0.07 1.76 5.12 -17.33 -0.09 1.68 15 3 Si 0.91 18.14 29.60 -169.99 -5.03 13.11 15 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 15 6 H -0.26 -5.15 7.11 56.52 0.40 -4.74 15 7 C -0.44 -11.43 8.70 -37.88 -0.33 -11.76 15 8 H 0.09 2.25 7.64 -52.49 -0.40 1.85 15 9 C 0.09 2.37 5.56 -106.88 -0.59 1.78 15 10 C -0.13 -3.32 8.74 -38.16 -0.33 -3.65 15 11 C -0.06 -1.51 6.03 -105.35 -0.63 -2.14 15 12 C -0.08 -1.67 10.20 -38.48 -0.39 -2.06 15 13 C -0.19 -3.55 5.99 -36.17 -0.22 -3.76 15 14 C 0.15 2.18 7.47 36.01 0.27 2.45 15 15 O -0.57 -8.05 13.64 -35.23 -0.48 -8.53 15 16 S 0.01 0.28 23.19 -107.50 -2.49 -2.21 15 17 C -0.21 -4.93 6.50 -38.07 -0.25 -5.18 15 18 C -0.09 -2.16 9.97 -39.18 -0.39 -2.55 15 19 C 0.03 0.71 6.71 -38.61 -0.26 0.45 15 20 O -0.49 -10.81 12.77 -18.98 -0.24 -11.06 15 21 H 0.28 6.36 8.30 -40.82 -0.34 6.03 15 22 H 0.13 3.34 6.15 -52.49 -0.32 3.02 15 23 H 0.13 2.43 8.06 -52.49 -0.42 2.00 15 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.37 3.05 9.12 45.56 0.42 3.46 15 27 H 0.10 2.12 8.06 -52.49 -0.42 1.70 15 28 H 0.37 6.32 9.06 45.56 0.41 6.74 15 LS Contribution 265.16 15.07 4.00 4.00 Total: -1.00 -30.00 265.16 -7.58 -37.58 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -0.72 Total: 10.75 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -3.22 Total: -24.76 kcal Atomic # 7 Polarization: -19.51 SS G_CDS: 0.61 Total: -18.89 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.72 Total: -19.58 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.49 Total: -2.21 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.00 -7.58 -37.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396331900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.525 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds