Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86797 * 119.99671 * 2 1 4 4 H 1.48497 * 109.47096 * 274.98858 * 3 2 1 5 5 H 1.48498 * 109.47489 * 34.99236 * 3 2 1 6 6 H 1.48507 * 109.46804 * 154.99173 * 3 2 1 7 7 C 1.40111 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99344 * 186.58388 * 7 2 1 9 9 C 1.39871 * 120.00211 * 6.57911 * 7 2 1 10 10 C 1.36990 * 124.82032 * 173.27292 * 9 7 2 11 11 C 1.39723 * 115.04503 * 180.02562 * 10 9 7 12 12 C 1.40454 * 112.86675 * 359.97438 * 11 10 9 13 13 C 1.39414 * 119.83546 * 179.97438 * 12 11 10 14 14 C 1.38313 * 120.24711 * 0.04526 * 13 12 11 15 15 O 1.35780 * 119.94917 * 179.97438 * 14 13 12 16 16 C 1.39504 * 120.09866 * 359.97438 * 14 13 12 17 17 C 1.35799 * 120.58473 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.71866 * 179.72203 * 17 16 14 19 19 O 1.42898 * 109.47344 * 359.97438 * 18 17 16 20 20 S 1.75448 * 124.82579 * 353.27102 * 9 7 2 21 21 H 0.97000 * 120.00337 * 359.97438 * 1 2 3 22 22 H 1.07998 * 122.47756 * 0.04309 * 10 9 7 23 23 H 1.07995 * 119.87420 * 180.02562 * 13 12 11 24 24 H 0.96707 * 114.00080 * 270.02458 * 15 14 13 25 25 H 1.07995 * 119.70827 * 180.02562 * 16 14 13 26 26 H 1.09003 * 109.47003 * 119.99776 * 18 17 16 27 27 H 1.09001 * 109.46835 * 239.99755 * 18 17 16 28 28 H 0.96694 * 113.99829 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.3840 2.1073 -1.3947 5 1 1.4962 2.6199 0.8029 6 1 3.5884 1.4120 0.5919 7 6 2.0086 -1.2134 -0.0005 8 1 3.0833 -1.2165 0.1067 9 6 1.3161 -2.4207 -0.1399 10 6 1.9060 -3.6486 -0.2849 11 6 1.0182 -4.7204 -0.4085 12 6 -0.3279 -4.3226 -0.3584 13 6 -1.3378 -5.2774 -0.4684 14 6 -1.0188 -6.6140 -0.6257 15 8 -2.0073 -7.5389 -0.7318 16 6 0.3169 -7.0133 -0.6755 17 6 1.3157 -6.0993 -0.5702 18 6 2.7519 -6.5530 -0.6203 19 8 2.7979 -7.9721 -0.7813 20 16 -0.4313 -2.5777 -0.1537 21 1 -0.4851 0.8400 0.0004 22 1 2.9780 -3.7785 -0.3022 23 1 -2.3731 -4.9722 -0.4304 24 1 -2.2919 -7.9093 0.1150 25 1 0.5588 -8.0586 -0.7989 26 1 3.2548 -6.0751 -1.4610 27 1 3.2528 -6.2765 0.3075 28 1 3.6934 -8.3346 -0.8212 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396332538.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -80.655656 kcal Electronic energy + Delta-G solvation = -15323.489981 eV Core-core repulsion = 12622.650500 eV Total energy + Delta-G solvation = -2700.839481 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.90373 -36.80742 -36.04404 -34.71124 -32.51589 -30.56185 -28.68483 -25.97975 -24.48801 -22.32599 -20.69727 -19.39365 -17.92499 -17.39269 -16.83941 -15.62067 -15.36209 -14.60115 -14.42344 -14.22053 -13.90667 -13.35161 -13.02191 -12.37519 -12.24540 -11.97153 -11.58895 -11.42966 -11.19902 -10.67434 -10.60528 -10.35825 -10.35358 -9.89010 -9.56743 -9.26428 -9.09617 -8.33106 -7.32628 -7.25285 -6.43539 -4.74292 1.90274 2.35711 2.74329 2.80466 2.86603 3.18996 3.45482 3.52174 3.77265 4.46231 4.65730 4.90161 5.15283 5.61484 5.87859 6.00447 6.00874 6.20836 6.52100 6.59492 6.80477 6.87856 7.14149 7.26267 7.37962 7.43578 7.64554 7.73977 7.88078 7.98537 8.20897 8.31999 8.51248 9.57276 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.006676 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.447441 B = 4193.382008 C = 5050.526319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.053 3.947 3 Si 0.940 3.060 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.381 4.381 8 H 0.100 0.900 9 C 0.057 3.943 10 C -0.364 4.364 11 C 0.024 3.976 12 C -0.257 4.257 13 C -0.069 4.069 14 C 0.008 3.992 15 O -0.501 6.501 16 C -0.099 4.099 17 C -0.122 4.122 18 C 0.132 3.868 19 O -0.573 6.573 20 S 0.141 5.859 21 H 0.302 0.698 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.366 0.634 25 H 0.119 0.881 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 -2.753 1.142 3.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.169 4.169 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.415 4.415 8 H 0.118 0.882 9 C -0.063 4.063 10 C -0.389 4.389 11 C 0.016 3.984 12 C -0.371 4.371 13 C -0.092 4.092 14 C -0.038 4.038 15 O -0.308 6.308 16 C -0.119 4.119 17 C -0.124 4.124 18 C 0.055 3.945 19 O -0.378 6.378 20 S 0.402 5.598 21 H 0.115 0.885 22 H 0.125 0.875 23 H 0.126 0.874 24 H 0.218 0.782 25 H 0.137 0.863 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.288 -1.367 0.666 1.548 hybrid contribution 2.038 -0.463 0.349 2.119 sum 2.325 -1.831 1.015 3.129 Atomic orbital electron populations 1.68688 1.07818 1.31208 1.32175 1.26341 0.95132 1.03094 0.92363 0.85727 0.80168 0.78212 0.79667 1.18787 1.19518 1.17946 1.19340 0.96172 0.88739 1.37226 0.88202 1.21436 0.94826 0.95840 0.94182 1.19544 0.97686 0.90627 1.31053 1.17743 0.92242 0.91918 0.96505 1.23427 0.95767 1.02309 1.15640 1.20411 0.97291 0.91552 0.99963 1.17906 0.86789 0.87368 1.11765 1.84837 1.54600 1.57632 1.33728 1.20321 0.91297 0.99365 1.00959 1.18940 0.93171 0.91925 1.08379 1.20711 0.94913 0.79675 0.99226 1.86458 1.32363 1.22128 1.96858 1.84831 1.05308 0.92328 1.77375 0.88469 0.87542 0.87446 0.78151 0.86293 0.93145 0.93126 0.78192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.68 10.62 55.56 0.59 -17.09 15 2 C 0.05 1.17 5.49 -17.28 -0.09 1.07 15 3 Si 0.94 16.44 29.57 -169.99 -5.03 11.42 15 4 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 5 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 6 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 7 C -0.38 -9.15 9.25 -38.27 -0.35 -9.51 15 8 H 0.10 2.25 7.86 -52.49 -0.41 1.84 15 9 C 0.06 1.44 6.10 -39.42 -0.24 1.20 15 10 C -0.36 -9.02 9.70 -39.48 -0.38 -9.40 15 11 C 0.02 0.59 5.82 -107.07 -0.62 -0.03 15 12 C -0.26 -6.27 6.47 -38.31 -0.25 -6.52 15 13 C -0.07 -1.56 10.00 -39.12 -0.39 -1.95 15 14 C 0.01 0.16 6.71 -39.08 -0.26 -0.10 15 15 O -0.50 -9.33 13.49 -19.05 -0.26 -9.59 15 16 C -0.10 -2.13 9.23 -39.98 -0.37 -2.50 15 17 C -0.12 -2.70 5.92 -104.06 -0.62 -3.32 15 18 C 0.13 2.38 6.88 36.01 0.25 2.63 15 19 O -0.57 -9.18 12.07 -35.23 -0.43 -9.60 15 20 S 0.14 3.46 20.16 -107.50 -2.17 1.30 15 21 H 0.30 6.15 8.30 -40.82 -0.34 5.81 15 22 H 0.11 2.47 7.90 -52.49 -0.41 2.06 15 23 H 0.11 2.21 8.06 -52.49 -0.42 1.79 15 24 H 0.37 4.94 9.06 45.56 0.41 5.35 15 25 H 0.12 2.44 6.90 -52.49 -0.36 2.08 15 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 15 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 28 H 0.37 3.80 9.12 45.56 0.42 4.22 15 LS Contribution 262.28 15.07 3.95 3.95 Total: -1.00 -28.97 262.28 -7.43 -36.40 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -0.76 Total: 11.63 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -3.33 Total: -28.42 kcal Atomic # 7 Polarization: -17.68 SS G_CDS: 0.59 Total: -17.09 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.68 Total: -19.19 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.17 Total: 1.30 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.97 -7.43 -36.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396332538.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.260 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds