Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86797 * 119.99671 * 2 1 4 4 H 1.48497 * 109.47096 * 274.98858 * 3 2 1 5 5 H 1.48498 * 109.47489 * 34.99236 * 3 2 1 6 6 H 1.48507 * 109.46804 * 154.99173 * 3 2 1 7 7 C 1.40111 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99344 * 186.58388 * 7 2 1 9 9 C 1.39871 * 120.00211 * 6.57911 * 7 2 1 10 10 C 1.36990 * 124.82032 * 173.27292 * 9 7 2 11 11 C 1.39723 * 115.04503 * 180.02562 * 10 9 7 12 12 C 1.40454 * 112.86675 * 359.97438 * 11 10 9 13 13 C 1.39414 * 119.83546 * 179.97438 * 12 11 10 14 14 C 1.38313 * 120.24711 * 0.04526 * 13 12 11 15 15 O 1.35780 * 119.94917 * 179.97438 * 14 13 12 16 16 C 1.39504 * 120.09866 * 359.97438 * 14 13 12 17 17 C 1.35799 * 120.58473 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.71866 * 179.72203 * 17 16 14 19 19 O 1.42898 * 109.47344 * 359.97438 * 18 17 16 20 20 S 1.75448 * 124.82579 * 353.27102 * 9 7 2 21 21 H 0.97000 * 120.00337 * 359.97438 * 1 2 3 22 22 H 1.07998 * 122.47756 * 0.04309 * 10 9 7 23 23 H 1.07995 * 119.87420 * 180.02562 * 13 12 11 24 24 H 0.96707 * 114.00080 * 270.02458 * 15 14 13 25 25 H 1.07995 * 119.70827 * 180.02562 * 16 14 13 26 26 H 1.09003 * 109.47003 * 119.99776 * 18 17 16 27 27 H 1.09001 * 109.46835 * 239.99755 * 18 17 16 28 28 H 0.96694 * 113.99829 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.3840 2.1073 -1.3947 5 1 1.4962 2.6199 0.8029 6 1 3.5884 1.4120 0.5919 7 6 2.0086 -1.2134 -0.0005 8 1 3.0833 -1.2165 0.1067 9 6 1.3161 -2.4207 -0.1399 10 6 1.9060 -3.6486 -0.2849 11 6 1.0182 -4.7204 -0.4085 12 6 -0.3279 -4.3226 -0.3584 13 6 -1.3378 -5.2774 -0.4684 14 6 -1.0188 -6.6140 -0.6257 15 8 -2.0073 -7.5389 -0.7318 16 6 0.3169 -7.0133 -0.6755 17 6 1.3157 -6.0993 -0.5702 18 6 2.7519 -6.5530 -0.6203 19 8 2.7979 -7.9721 -0.7813 20 16 -0.4313 -2.5777 -0.1537 21 1 -0.4851 0.8400 0.0004 22 1 2.9780 -3.7785 -0.3022 23 1 -2.3731 -4.9722 -0.4304 24 1 -2.2919 -7.9093 0.1150 25 1 0.5588 -8.0586 -0.7989 26 1 3.2548 -6.0751 -1.4610 27 1 3.2528 -6.2765 0.3075 28 1 3.6934 -8.3346 -0.8212 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396332538.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -101.222706 kcal Electronic energy + Delta-G solvation = -15324.381835 eV Core-core repulsion = 12622.650500 eV Total energy + Delta-G solvation = -2701.731335 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57376 -38.31529 -37.52260 -36.40246 -34.23068 -32.19572 -30.43928 -27.59874 -26.15411 -24.07541 -22.36097 -21.14385 -19.66908 -18.96814 -18.21333 -17.27193 -17.04127 -16.20309 -15.87961 -15.81433 -15.55453 -14.84879 -14.61430 -14.10967 -13.97743 -13.61423 -13.11400 -13.00050 -12.82047 -12.29762 -12.15503 -11.93735 -11.92562 -11.29594 -11.25003 -10.94997 -10.88582 -10.05370 -9.10764 -8.93922 -8.28112 -6.55105 0.17635 0.60176 1.28100 1.34791 1.38090 1.55113 1.80801 1.86586 2.12875 2.75256 3.13908 3.39901 3.57806 4.05232 4.31562 4.43974 4.58939 4.60902 4.77947 4.89760 5.07627 5.21599 5.40629 5.48796 5.65184 5.71144 5.91228 6.01722 6.14999 6.42920 6.52415 6.95052 7.05590 7.93021 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.006676 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.447441 B = 4193.382008 C = 5050.526319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.017 3.983 3 Si 1.014 2.986 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.251 1.251 7 C -0.407 4.407 8 H 0.107 0.893 9 C 0.028 3.972 10 C -0.384 4.384 11 C 0.000 4.000 12 C -0.277 4.277 13 C -0.087 4.087 14 C 0.023 3.977 15 O -0.502 6.502 16 C -0.107 4.107 17 C -0.129 4.129 18 C 0.139 3.861 19 O -0.581 6.581 20 S 0.123 5.877 21 H 0.313 0.687 22 H 0.112 0.888 23 H 0.120 0.880 24 H 0.395 0.605 25 H 0.133 0.867 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 -2.953 1.156 4.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.202 4.202 3 Si 0.832 3.168 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.174 1.174 7 C -0.440 4.440 8 H 0.125 0.875 9 C -0.091 4.091 10 C -0.408 4.408 11 C -0.008 4.008 12 C -0.391 4.391 13 C -0.110 4.110 14 C -0.023 4.023 15 O -0.313 6.313 16 C -0.128 4.128 17 C -0.130 4.130 18 C 0.062 3.938 19 O -0.390 6.390 20 S 0.382 5.618 21 H 0.127 0.873 22 H 0.130 0.870 23 H 0.138 0.862 24 H 0.251 0.749 25 H 0.151 0.849 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.892 -1.619 0.695 1.975 hybrid contribution 1.770 -0.571 0.342 1.892 sum 2.663 -2.190 1.037 3.600 Atomic orbital electron populations 1.68711 1.09206 1.32772 1.31629 1.27321 0.95837 1.06056 0.91024 0.84657 0.78871 0.73442 0.79824 1.18345 1.18414 1.17381 1.19704 0.96789 0.89384 1.38110 0.87496 1.21789 0.95215 0.96820 0.95302 1.19677 0.98086 0.90831 1.32237 1.18000 0.92254 0.93049 0.97489 1.23641 0.96592 1.02339 1.16552 1.20604 0.97609 0.91891 1.00903 1.17992 0.87444 0.87456 1.09458 1.84748 1.53755 1.56872 1.35928 1.20545 0.91279 0.99965 1.00982 1.19383 0.95685 0.91114 1.06867 1.20540 0.92418 0.80907 0.99952 1.86377 1.35063 1.20703 1.96814 1.84629 1.05627 0.93350 1.78165 0.87343 0.86971 0.86198 0.74936 0.84903 0.92496 0.92203 0.75079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.62 10.62 21.86 0.23 -36.39 15 2 C 0.02 0.75 5.49 85.30 0.47 1.21 15 3 Si 1.01 32.68 29.57 68.60 2.03 34.71 15 4 H -0.26 -8.15 7.11 99.48 0.71 -7.44 15 5 H -0.26 -7.89 7.11 99.48 0.71 -7.18 15 6 H -0.25 -7.80 7.11 99.48 0.71 -7.09 15 7 C -0.41 -19.82 9.25 23.12 0.21 -19.60 15 8 H 0.11 4.87 7.86 -2.91 -0.02 4.84 15 9 C 0.03 1.47 6.10 22.37 0.14 1.61 15 10 C -0.38 -19.43 9.70 22.34 0.22 -19.21 15 11 C 0.00 0.00 5.82 -21.45 -0.12 -0.12 15 12 C -0.28 -13.74 6.47 23.09 0.15 -13.59 15 13 C -0.09 -3.89 10.00 22.57 0.23 -3.67 15 14 C 0.02 0.94 6.71 22.59 0.15 1.10 15 15 O -0.50 -17.44 13.49 -91.09 -1.23 -18.67 15 16 C -0.11 -4.46 9.23 22.01 0.20 -4.26 15 17 C -0.13 -5.59 5.92 -19.50 -0.12 -5.70 15 18 C 0.14 4.81 6.88 71.24 0.49 5.30 15 19 O -0.58 -17.06 12.07 -148.98 -1.80 -18.86 15 20 S 0.12 6.18 20.16 -56.49 -1.14 5.04 15 21 H 0.31 12.64 8.30 -92.71 -0.77 11.87 15 22 H 0.11 5.32 7.90 -2.91 -0.02 5.29 15 23 H 0.12 4.90 8.06 -2.91 -0.02 4.87 15 24 H 0.39 9.41 9.06 -74.05 -0.67 8.74 15 25 H 0.13 5.12 6.90 -2.91 -0.02 5.10 15 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 15 28 H 0.40 6.92 9.12 -74.06 -0.68 6.24 15 Total: -1.00 -62.02 262.28 -0.01 -62.03 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.12 Total: 29.07 kcal Atomic # 6 Polarization: -58.96 SS G_CDS: 2.01 Total: -56.94 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.23 Total: -36.39 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -3.03 Total: -37.52 kcal Atomic # 14 Polarization: 32.68 SS G_CDS: 2.03 Total: 34.71 kcal Atomic # 16 Polarization: 6.18 SS G_CDS: -1.14 Total: 5.04 kcal Total: -62.02 -0.01 -62.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396332538.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.193 kcal (2) G-P(sol) polarization free energy of solvation -62.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds