Wall clock time and date at job start Mon Mar 30 2020 06:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31075 * 1 3 3 Si 1.86808 * 120.00073 * 2 1 4 4 H 1.48491 * 109.47304 * 270.00065 * 3 2 1 5 5 H 1.48497 * 109.46866 * 30.00242 * 3 2 1 6 6 H 1.48498 * 109.46981 * 149.99825 * 3 2 1 7 7 C 1.39712 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00278 * 191.08958 * 7 2 1 9 9 C 1.40797 * 119.99973 * 11.08167 * 7 2 1 10 10 C 1.36444 * 123.30009 * 22.42357 * 9 7 2 11 11 S 1.69965 * 111.96213 * 179.97438 * 10 9 7 12 12 C 1.75798 * 93.24356 * 359.97438 * 11 10 9 13 13 C 1.39360 * 110.16915 * 0.02562 * 12 11 10 14 14 C 1.40546 * 119.29324 * 180.02562 * 13 12 11 15 15 C 1.37944 * 120.27088 * 359.97438 * 14 13 12 16 16 O 1.35962 * 119.92829 * 180.02562 * 15 14 13 17 17 C 1.39041 * 120.13519 * 359.65944 * 15 14 13 18 18 C 1.37592 * 120.14146 * 0.65093 * 17 15 14 19 19 C 1.50704 * 119.76959 * 179.65912 * 18 17 15 20 20 O 1.42901 * 109.47058 * 359.72533 * 19 18 17 21 21 H 0.97003 * 120.00040 * 359.97438 * 1 2 3 22 22 H 1.08000 * 124.01713 * 359.96564 * 10 9 7 23 23 H 1.08003 * 119.86335 * 180.02562 * 14 13 12 24 24 H 0.96703 * 114.00476 * 90.00192 * 16 15 14 25 25 H 1.08003 * 119.92810 * 180.30837 * 17 15 14 26 26 H 1.09000 * 109.47155 * 239.72658 * 19 18 17 27 27 H 1.08997 * 109.47112 * 119.72780 * 19 18 17 28 28 H 0.96699 * 114.00015 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 2.4923 2.0465 -1.4000 5 1 1.4423 2.6527 0.7001 6 1 3.5423 1.4402 0.7001 7 6 2.0093 -1.2099 -0.0005 8 1 3.0742 -1.2188 0.1793 9 6 1.3251 -2.4178 -0.2354 10 6 0.1290 -2.4864 -0.8884 11 16 -0.4368 -4.0843 -1.0123 12 6 0.9539 -4.7482 -0.1663 13 6 1.8285 -3.7257 0.1967 14 6 3.0108 -4.0447 0.8866 15 6 3.3003 -5.3563 1.2005 16 8 4.4458 -5.6570 1.8685 17 6 2.4196 -6.3707 0.8420 18 6 1.2620 -6.0720 0.1609 19 6 0.3171 -7.1789 -0.2303 20 8 0.8441 -8.4325 0.2088 21 1 -0.4850 0.8401 0.0004 22 1 -0.3959 -1.6275 -1.2797 23 1 3.6949 -3.2595 1.1727 24 1 4.3523 -5.6536 2.8310 25 1 2.6472 -7.3960 1.0940 26 1 0.2024 -7.1926 -1.3142 27 1 -0.6536 -7.0095 0.2356 28 1 0.2867 -9.1917 -0.0099 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396333253.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:47 Heat of formation + Delta-G solvation = -65.060899 kcal Electronic energy + Delta-G solvation = -15458.522562 eV Core-core repulsion = 12758.359321 eV Total energy + Delta-G solvation = -2700.163242 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.23977 -37.00206 -36.46660 -34.45150 -32.13463 -30.26492 -28.02976 -26.46721 -25.06894 -22.39915 -21.02208 -19.58897 -17.71521 -17.00593 -16.67601 -16.35356 -15.22794 -14.90333 -14.73658 -14.36233 -13.95551 -13.62289 -13.01043 -12.40480 -12.04816 -11.81662 -11.42322 -11.35110 -11.11001 -10.91524 -10.61126 -10.35179 -10.22439 -9.83509 -9.72737 -9.44046 -9.17607 -8.38119 -7.37325 -6.75652 -6.64492 -4.33492 1.78414 1.81493 2.77799 2.96142 3.08440 3.11688 3.63858 3.76511 3.97617 4.29738 4.35258 4.73994 5.25807 5.30728 5.54954 5.66426 5.69133 5.96082 6.20042 6.34019 6.74143 6.82169 7.01291 7.04559 7.15680 7.34113 7.67045 7.72133 7.95229 8.17220 8.44779 8.75353 8.86536 10.26920 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027323 B = 0.007496 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.548054 B = 3734.551150 C = 4694.904750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.068 3.932 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.433 4.433 8 H 0.075 0.925 9 C 0.078 3.922 10 C -0.348 4.348 11 S 0.037 5.963 12 C -0.145 4.145 13 C -0.046 4.046 14 C -0.097 4.097 15 C 0.071 3.929 16 O -0.500 6.500 17 C -0.123 4.123 18 C -0.061 4.061 19 C 0.122 3.878 20 O -0.569 6.569 21 H 0.277 0.723 22 H 0.164 0.836 23 H 0.125 0.875 24 H 0.379 0.621 25 H 0.131 0.869 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 -8.573 1.292 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.466 4.466 8 H 0.094 0.906 9 C 0.069 3.931 10 C -0.484 4.484 11 S 0.300 5.700 12 C -0.260 4.260 13 C -0.056 4.056 14 C -0.117 4.117 15 C 0.024 3.976 16 O -0.309 6.309 17 C -0.143 4.143 18 C -0.067 4.067 19 C 0.044 3.956 20 O -0.374 6.374 21 H 0.088 0.912 22 H 0.181 0.819 23 H 0.143 0.857 24 H 0.232 0.768 25 H 0.149 0.851 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.689 -8.545 0.271 8.577 hybrid contribution 0.927 1.329 0.955 1.881 sum 0.238 -7.216 1.226 7.323 Atomic orbital electron populations 1.69847 1.07269 1.28555 1.37121 1.25773 0.94863 1.01001 0.93133 0.86218 0.80195 0.80569 0.79173 1.19453 1.20377 1.18754 1.18955 0.95514 0.89767 1.42409 0.90643 1.17306 0.92986 0.89683 0.93128 1.24381 1.07056 0.96730 1.20267 1.81780 1.22995 1.03179 1.62011 1.22380 1.01218 0.95372 1.07060 1.19559 0.93784 0.93951 0.98303 1.21116 0.96045 0.95142 0.99422 1.18057 0.87449 0.91679 1.00458 1.84842 1.31268 1.92345 1.22462 1.20770 0.93276 0.99172 1.01116 1.18717 0.96111 0.90755 1.01140 1.20838 0.94724 0.82086 0.97904 1.86455 1.51671 1.16270 1.83014 0.91197 0.81871 0.85731 0.76754 0.85094 0.92363 0.92332 0.77637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.96 10.79 55.54 0.60 -20.36 15 2 C 0.07 1.72 5.36 -17.32 -0.09 1.63 15 3 Si 0.91 19.02 29.57 -169.99 -5.03 14.00 15 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 7 C -0.43 -11.53 9.07 -38.06 -0.35 -11.87 15 8 H 0.08 1.92 7.69 -52.49 -0.40 1.52 15 9 C 0.08 2.07 5.69 -106.18 -0.60 1.46 15 10 C -0.35 -9.07 9.51 30.09 0.29 -8.78 15 11 S 0.04 0.82 22.62 -107.50 -2.43 -1.62 15 12 C -0.14 -3.22 6.28 -38.58 -0.24 -3.47 15 13 C -0.05 -1.11 6.02 -105.21 -0.63 -1.74 15 14 C -0.10 -2.11 9.80 -38.82 -0.38 -2.49 15 15 C 0.07 1.38 6.68 -39.39 -0.26 1.12 15 16 O -0.50 -8.33 13.50 -19.62 -0.26 -8.59 15 17 C -0.12 -2.33 9.29 -39.52 -0.37 -2.70 15 18 C -0.06 -1.19 5.91 -104.27 -0.62 -1.81 15 19 C 0.12 1.86 7.09 36.01 0.26 2.12 15 20 O -0.57 -7.66 12.10 -35.23 -0.43 -8.08 15 21 H 0.28 6.64 8.30 -40.82 -0.34 6.30 15 22 H 0.16 4.48 6.26 -52.49 -0.33 4.16 15 23 H 0.12 2.61 7.88 -52.48 -0.41 2.19 15 24 H 0.38 4.35 9.06 45.56 0.41 4.76 15 25 H 0.13 2.30 6.96 -52.48 -0.37 1.94 15 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 28 H 0.38 2.96 9.12 45.56 0.42 3.38 15 LS Contribution 262.18 15.07 3.95 3.95 Total: -1.00 -30.33 262.18 -7.27 -37.60 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -0.66 Total: 9.62 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -3.00 Total: -26.52 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.60 Total: -20.36 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.69 Total: -16.68 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.43 Total: -1.62 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.33 -7.27 -37.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333253.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.460 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds