Wall clock time and date at job start Mon Mar 30 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86797 * 120.00126 * 2 1 4 4 H 1.48502 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47212 * 299.99246 * 3 2 1 6 6 H 1.48507 * 109.47347 * 59.99679 * 3 2 1 7 7 C 1.39924 * 119.99600 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99397 * 192.85624 * 7 2 1 9 9 C 1.40556 * 120.00055 * 12.85405 * 7 2 1 10 10 C 1.47829 * 120.40627 * 52.02505 * 9 7 2 11 11 C 1.40175 * 129.22032 * 359.97438 * 10 9 7 12 12 O 1.36119 * 122.16411 * 359.97438 * 11 10 9 13 13 C 1.33178 * 115.67423 * 180.26936 * 11 10 9 14 14 S 1.75493 * 110.65761 * 359.62134 * 13 11 10 15 15 C 1.39786 * 118.07755 * 180.02562 * 10 9 7 16 16 C 1.39597 * 120.04982 * 0.02562 * 15 10 9 17 17 C 1.38152 * 121.45949 * 359.97438 * 16 15 10 18 18 C 1.37614 * 121.09222 * 0.02562 * 17 16 15 19 19 C 1.50708 * 119.93252 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.46901 * 354.72463 * 19 18 17 21 21 H 0.96998 * 119.99612 * 4.94023 * 1 2 3 22 22 H 0.96697 * 114.00423 * 90.00049 * 12 11 10 23 23 H 1.07998 * 124.66867 * 179.75247 * 13 11 10 24 24 H 1.08002 * 119.27170 * 179.97438 * 16 15 10 25 25 H 1.08005 * 119.45737 * 180.02562 * 17 16 15 26 26 H 1.08997 * 109.47065 * 114.72645 * 19 18 17 27 27 H 1.09004 * 109.46702 * 234.72821 * 19 18 17 28 28 H 0.96701 * 113.99560 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8840 2.3965 1.2125 7 6 2.0083 -1.2118 0.0005 8 1 3.0680 -1.2234 0.2087 9 6 1.3319 -2.4139 -0.2697 10 6 0.4946 -2.5453 -1.4809 11 6 0.2372 -1.6037 -2.4869 12 8 0.7735 -0.3528 -2.4630 13 6 -0.5709 -2.0099 -3.4644 14 16 -1.0824 -3.6671 -3.1963 15 6 -0.1568 -3.7623 -1.7016 16 6 -0.0076 -4.8101 -0.7915 17 6 0.7771 -4.6780 0.3379 18 6 1.4423 -3.5039 0.6077 19 6 2.2909 -3.3882 1.8477 20 8 2.1476 -4.5721 2.6351 21 1 -0.4849 0.8369 -0.0723 22 1 1.6289 -0.2830 -2.9083 23 1 -0.8686 -1.4038 -4.3073 24 1 -0.5169 -5.7448 -0.9741 25 1 0.8702 -5.5099 1.0203 26 1 3.3358 -3.2655 1.5628 27 1 1.9689 -2.5241 2.4290 28 1 2.6674 -4.5674 3.4505 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396333257.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:11 Heat of formation + Delta-G solvation = -49.076486 kcal Electronic energy + Delta-G solvation = -16157.932051 eV Core-core repulsion = 13458.461946 eV Total energy + Delta-G solvation = -2699.470105 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.67721 -36.89398 -35.52827 -33.69930 -32.47464 -30.30177 -28.26231 -25.57090 -24.56809 -22.07167 -20.92395 -18.99328 -17.77460 -16.79920 -16.14793 -16.00498 -15.00908 -14.36870 -14.31104 -14.02039 -13.89380 -13.20181 -12.78327 -12.15640 -12.02366 -11.82090 -11.35734 -11.18988 -11.00050 -10.87910 -10.48703 -10.18549 -9.99042 -9.68485 -9.33561 -9.31929 -8.82602 -7.92227 -7.23377 -6.82488 -6.39845 -4.50181 1.85006 2.58908 2.62131 2.97389 3.07509 3.11434 3.14384 3.47146 3.97974 4.61655 4.96659 5.22645 5.47461 5.90003 6.07542 6.13573 6.34287 6.44378 6.48521 6.68848 6.94337 7.04839 7.15685 7.29680 7.50823 7.61770 7.78430 8.00824 8.25617 8.31005 8.63334 8.71087 8.80725 10.27901 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.013744 C = 0.007813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.010519 B = 2036.753523 C = 3583.107327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.110 3.890 3 Si 0.901 3.099 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.279 1.279 7 C -0.489 4.489 8 H 0.083 0.917 9 C 0.196 3.804 10 C -0.158 4.158 11 C 0.194 3.806 12 O -0.467 6.467 13 C -0.315 4.315 14 S 0.020 5.980 15 C -0.079 4.079 16 C -0.213 4.213 17 C -0.032 4.032 18 C -0.206 4.206 19 C 0.149 3.851 20 O -0.579 6.579 21 H 0.282 0.718 22 H 0.371 0.629 23 H 0.149 0.851 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.112 -1.611 -1.080 3.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.111 4.111 3 Si 0.726 3.274 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.205 1.205 7 C -0.518 4.518 8 H 0.101 0.899 9 C 0.191 3.809 10 C -0.165 4.165 11 C 0.138 3.862 12 O -0.274 6.274 13 C -0.448 4.448 14 S 0.280 5.720 15 C -0.194 4.194 16 C -0.237 4.237 17 C -0.052 4.052 18 C -0.210 4.210 19 C 0.072 3.928 20 O -0.383 6.383 21 H 0.093 0.907 22 H 0.224 0.776 23 H 0.166 0.834 24 H 0.115 0.885 25 H 0.129 0.871 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.033 -2.371 -2.072 3.314 hybrid contribution 1.779 2.001 0.776 2.788 sum 2.811 -0.370 -1.296 3.118 Atomic orbital electron populations 1.69667 1.07637 1.29755 1.32142 1.25499 0.94457 0.99954 0.91196 0.86416 0.80448 0.82003 0.78553 1.18863 1.19446 1.20510 1.19184 0.96379 0.90811 1.45428 0.89871 1.17970 0.86040 0.91094 0.85806 1.19416 1.07390 0.92012 0.97653 1.16888 0.94096 0.84033 0.91191 1.84968 1.38091 1.24910 1.79468 1.24691 1.13449 0.99916 1.06754 1.83364 1.56094 1.10355 1.22236 1.22185 1.01230 0.98190 0.97767 1.19651 1.08966 0.97251 0.97870 1.20308 0.93933 0.96570 0.94431 1.19485 1.07715 0.96636 0.97149 1.20525 0.96778 0.85314 0.90147 1.86437 1.72209 1.42235 1.37464 0.90713 0.77562 0.83352 0.88500 0.87127 0.94345 0.93117 0.78738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.91 11.32 55.55 0.63 -19.28 15 2 C 0.11 2.65 3.14 -17.33 -0.05 2.59 15 3 Si 0.90 18.16 29.35 -169.99 -4.99 13.17 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 6 H -0.28 -5.69 7.11 56.52 0.40 -5.28 15 7 C -0.49 -11.97 7.48 -38.08 -0.28 -12.25 15 8 H 0.08 1.95 7.88 -52.48 -0.41 1.53 15 9 C 0.20 4.96 5.30 -104.30 -0.55 4.41 15 10 C -0.16 -3.97 5.53 -104.67 -0.58 -4.54 15 11 C 0.19 4.52 6.08 -40.62 -0.25 4.28 15 12 O -0.47 -10.26 9.32 -20.12 -0.19 -10.44 15 13 C -0.31 -6.70 11.08 28.97 0.32 -6.38 15 14 S 0.02 0.42 23.29 -107.50 -2.50 -2.08 15 15 C -0.08 -1.88 6.48 -38.50 -0.25 -2.13 15 16 C -0.21 -4.84 10.02 -39.11 -0.39 -5.23 15 17 C -0.03 -0.72 9.31 -39.84 -0.37 -1.09 15 18 C -0.21 -4.90 5.92 -104.05 -0.62 -5.52 15 19 C 0.15 2.99 6.51 36.01 0.23 3.23 15 20 O -0.58 -10.25 12.12 -35.23 -0.43 -10.68 15 21 H 0.28 6.90 8.30 -40.82 -0.34 6.56 15 22 H 0.37 6.58 9.07 45.56 0.41 6.99 15 23 H 0.15 2.79 8.06 -52.49 -0.42 2.37 15 24 H 0.10 1.97 8.06 -52.49 -0.42 1.55 15 25 H 0.11 2.33 6.96 -52.48 -0.37 1.97 15 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.05 1.04 8.03 -51.93 -0.42 0.63 15 28 H 0.37 4.39 9.12 45.56 0.42 4.80 15 LS Contribution 257.19 15.07 3.88 3.88 Total: -1.00 -29.30 257.19 -7.16 -36.47 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.77 Total: 11.62 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -2.79 Total: -22.64 kcal Atomic # 7 Polarization: -19.91 SS G_CDS: 0.63 Total: -19.28 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.61 Total: -21.12 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -4.99 Total: 13.17 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.50 Total: -2.08 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.30 -7.16 -36.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333257.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.608 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds