Wall clock time and date at job start Mon Mar 30 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86799 * 119.99549 * 2 1 4 4 H 1.48501 * 109.47133 * 239.99839 * 3 2 1 5 5 H 1.48496 * 109.47628 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46913 * 120.00031 * 3 2 1 7 7 C 1.39864 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99669 * 199.83415 * 7 2 1 9 9 C 1.41111 * 120.00114 * 19.83581 * 7 2 1 10 10 C 1.41694 * 120.10011 * 39.50530 * 9 7 2 11 11 O 1.35760 * 120.01694 * 359.70159 * 10 9 7 12 12 C 1.36266 * 119.96369 * 179.97438 * 10 9 7 13 13 C 1.40244 * 120.78472 * 359.97438 * 12 10 9 14 14 S 1.76011 * 130.20985 * 180.02562 * 13 12 10 15 15 C 1.75254 * 92.26085 * 180.02562 * 14 13 12 16 16 C 1.31626 * 111.55378 * 359.97438 * 15 14 13 17 17 C 1.40260 * 120.24048 * 0.02562 * 13 12 10 18 18 C 1.39865 * 120.09523 * 219.48135 * 9 7 2 19 19 C 1.50697 * 119.97049 * 0.02597 * 18 9 7 20 20 O 1.42906 * 109.47181 * 89.99759 * 19 18 9 21 21 H 0.96997 * 120.00114 * 359.97438 * 1 2 3 22 22 H 0.96703 * 113.99701 * 95.07763 * 11 10 9 23 23 H 1.07999 * 119.60814 * 179.97438 * 12 10 9 24 24 H 1.07995 * 124.22534 * 180.02562 * 15 14 13 25 25 H 1.07994 * 122.54776 * 180.02562 * 16 15 14 26 26 H 1.08998 * 109.47347 * 209.99930 * 19 18 9 27 27 H 1.09004 * 109.47060 * 329.99879 * 19 18 9 28 28 H 0.96699 * 113.99914 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0969 1.6965 -1.2125 5 1 1.2782 2.7465 0.0006 6 1 3.0969 1.6965 1.2125 7 6 2.0086 -1.2113 -0.0005 8 1 3.0405 -1.2391 0.3168 9 6 1.3659 -2.3969 -0.4157 10 6 0.4765 -2.3743 -1.5186 11 8 0.2368 -1.2098 -2.1740 12 6 -0.1423 -3.5210 -1.9175 13 6 0.0897 -4.7317 -1.2489 14 16 -0.5649 -6.3381 -1.5473 15 6 0.3386 -7.0297 -0.2143 16 6 1.0688 -6.1215 0.3977 17 6 0.9660 -4.7778 -0.1547 18 6 1.6052 -3.5979 0.2599 19 6 2.5503 -3.6262 1.4333 20 8 1.8232 -3.3712 2.6368 21 1 -0.4850 0.8400 0.0004 22 1 0.7893 -1.0780 -2.9566 23 1 -0.8193 -3.4971 -2.7586 24 1 0.3015 -8.0711 0.0692 25 1 1.6965 -6.3550 1.2449 26 1 3.0233 -4.6062 1.4954 27 1 3.3155 -2.8611 1.3020 28 1 2.3697 -3.3739 3.4346 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396333277.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:14 Heat of formation + Delta-G solvation = -50.533326 kcal Electronic energy + Delta-G solvation = -16000.746375 eV Core-core repulsion = 13301.213097 eV Total energy + Delta-G solvation = -2699.533279 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.73273 -36.42480 -35.61170 -33.79150 -32.71350 -30.48539 -28.10145 -25.58293 -24.45835 -22.31964 -20.34246 -19.74790 -17.36898 -16.77400 -16.44220 -16.11047 -15.41056 -14.92321 -14.00089 -13.70655 -13.34548 -12.97834 -12.85852 -12.42476 -12.21144 -11.84913 -11.30364 -11.21595 -11.16894 -10.89590 -10.37205 -10.24287 -10.05757 -9.76199 -9.10500 -9.07227 -8.85103 -8.35633 -7.15979 -6.87988 -6.66554 -4.37910 1.75980 2.49206 2.53951 2.94444 3.06158 3.09190 3.10927 3.32197 3.96000 4.48698 5.09953 5.42727 5.49581 5.75002 5.84149 6.07460 6.09312 6.30352 6.47847 6.50326 6.65107 6.96484 7.09311 7.19184 7.35632 7.48849 7.77540 7.90639 8.31019 8.49300 8.56580 8.81873 9.11714 10.25637 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.008545 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.832203 B = 3275.944701 C = 4028.013107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.092 3.908 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.125 3.875 10 C 0.090 3.910 11 O -0.467 6.467 12 C -0.102 4.102 13 C -0.212 4.212 14 S 0.006 5.994 15 C -0.206 4.206 16 C -0.111 4.111 17 C -0.029 4.029 18 C -0.176 4.176 19 C 0.148 3.852 20 O -0.561 6.561 21 H 0.282 0.718 22 H 0.355 0.645 23 H 0.102 0.898 24 H 0.150 0.850 25 H 0.129 0.871 26 H 0.025 0.975 27 H 0.048 0.952 28 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.625 -4.899 -0.797 6.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.131 4.131 3 Si 0.728 3.272 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.495 4.495 8 H 0.099 0.901 9 C 0.121 3.879 10 C 0.043 3.957 11 O -0.273 6.273 12 C -0.125 4.125 13 C -0.326 4.326 14 S 0.265 5.735 15 C -0.339 4.339 16 C -0.142 4.142 17 C -0.035 4.035 18 C -0.180 4.180 19 C 0.071 3.929 20 O -0.364 6.364 21 H 0.093 0.907 22 H 0.207 0.793 23 H 0.120 0.880 24 H 0.168 0.832 25 H 0.146 0.854 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.461 -5.273 -1.791 5.757 hybrid contribution 1.972 1.200 1.034 2.529 sum 3.433 -4.073 -0.757 5.380 Atomic orbital electron populations 1.69752 1.07671 1.29539 1.30244 1.25671 0.94433 1.00492 0.92485 0.86462 0.80160 0.80896 0.79667 1.18974 1.20457 1.19325 1.19166 0.98720 0.91296 1.40321 0.90113 1.17475 0.88758 0.92062 0.89652 1.18104 0.99864 0.83622 0.94120 1.85006 1.62117 1.37431 1.42726 1.19998 1.01456 0.90685 1.00365 1.21613 1.09385 0.95799 1.05800 1.83356 1.52528 1.02220 1.35417 1.24591 1.04799 1.02438 1.02100 1.20948 1.00806 0.91954 1.00540 1.18821 0.97261 0.92564 0.94831 1.19004 1.07886 0.92236 0.98906 1.20578 0.92518 0.96655 0.83117 1.86754 1.38655 1.95093 1.15927 0.90743 0.79309 0.87992 0.83189 0.85369 0.95691 0.93397 0.79929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.85 11.26 55.54 0.63 -19.23 15 2 C 0.09 2.28 4.40 -17.33 -0.08 2.20 15 3 Si 0.90 18.43 29.60 -169.99 -5.03 13.40 15 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.27 -5.43 7.11 56.52 0.40 -5.02 15 7 C -0.47 -11.90 7.99 -37.88 -0.30 -12.20 15 8 H 0.08 1.96 6.67 -52.49 -0.35 1.61 15 9 C 0.12 3.23 5.34 -106.88 -0.57 2.66 15 10 C 0.09 2.24 6.13 -38.97 -0.24 2.00 15 11 O -0.47 -10.90 10.39 -18.99 -0.20 -11.10 15 12 C -0.10 -2.40 9.91 -39.54 -0.39 -2.79 15 13 C -0.21 -4.88 6.50 -38.07 -0.25 -5.12 15 14 S 0.01 0.11 23.23 -107.50 -2.50 -2.39 15 15 C -0.21 -3.65 11.00 28.87 0.32 -3.34 15 16 C -0.11 -2.17 9.79 -38.49 -0.38 -2.55 15 17 C -0.03 -0.67 5.97 -105.35 -0.63 -1.29 15 18 C -0.18 -4.29 5.63 -103.18 -0.58 -4.87 15 19 C 0.15 3.10 6.60 36.00 0.24 3.34 15 20 O -0.56 -11.86 13.64 -35.23 -0.48 -12.34 15 21 H 0.28 6.91 8.30 -40.82 -0.34 6.57 15 22 H 0.36 6.55 9.06 45.56 0.41 6.96 15 23 H 0.10 2.19 8.06 -52.49 -0.42 1.76 15 24 H 0.15 2.11 8.06 -52.49 -0.42 1.68 15 25 H 0.13 2.21 7.52 -52.49 -0.39 1.82 15 26 H 0.02 0.46 7.25 -51.93 -0.38 0.08 15 27 H 0.05 0.98 6.40 -51.93 -0.33 0.65 15 28 H 0.36 5.32 9.12 45.56 0.42 5.73 15 LS Contribution 259.12 15.07 3.90 3.90 Total: -1.00 -30.85 259.12 -7.14 -37.99 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -0.60 Total: 11.72 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -2.86 Total: -21.96 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.63 Total: -19.23 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.68 Total: -23.44 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.50 Total: -2.39 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.85 -7.14 -37.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333277.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.547 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds