Wall clock time and date at job start Mon Mar 30 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86799 * 119.99549 * 2 1 4 4 H 1.48501 * 109.47133 * 239.99839 * 3 2 1 5 5 H 1.48496 * 109.47628 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46913 * 120.00031 * 3 2 1 7 7 C 1.39864 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99669 * 199.83415 * 7 2 1 9 9 C 1.41111 * 120.00114 * 19.83581 * 7 2 1 10 10 C 1.41694 * 120.10011 * 39.50530 * 9 7 2 11 11 O 1.35760 * 120.01694 * 359.70159 * 10 9 7 12 12 C 1.36266 * 119.96369 * 179.97438 * 10 9 7 13 13 C 1.40244 * 120.78472 * 359.97438 * 12 10 9 14 14 S 1.76011 * 130.20985 * 180.02562 * 13 12 10 15 15 C 1.75254 * 92.26085 * 180.02562 * 14 13 12 16 16 C 1.31626 * 111.55378 * 359.97438 * 15 14 13 17 17 C 1.40260 * 120.24048 * 0.02562 * 13 12 10 18 18 C 1.39865 * 120.09523 * 219.48135 * 9 7 2 19 19 C 1.50697 * 119.97049 * 0.02597 * 18 9 7 20 20 O 1.42906 * 109.47181 * 89.99759 * 19 18 9 21 21 H 0.96997 * 120.00114 * 359.97438 * 1 2 3 22 22 H 0.96703 * 113.99701 * 95.07763 * 11 10 9 23 23 H 1.07999 * 119.60814 * 179.97438 * 12 10 9 24 24 H 1.07995 * 124.22534 * 180.02562 * 15 14 13 25 25 H 1.07994 * 122.54776 * 180.02562 * 16 15 14 26 26 H 1.08998 * 109.47347 * 209.99930 * 19 18 9 27 27 H 1.09004 * 109.47060 * 329.99879 * 19 18 9 28 28 H 0.96699 * 113.99914 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0969 1.6965 -1.2125 5 1 1.2782 2.7465 0.0006 6 1 3.0969 1.6965 1.2125 7 6 2.0086 -1.2113 -0.0005 8 1 3.0405 -1.2391 0.3168 9 6 1.3659 -2.3969 -0.4157 10 6 0.4765 -2.3743 -1.5186 11 8 0.2368 -1.2098 -2.1740 12 6 -0.1423 -3.5210 -1.9175 13 6 0.0897 -4.7317 -1.2489 14 16 -0.5649 -6.3381 -1.5473 15 6 0.3386 -7.0297 -0.2143 16 6 1.0688 -6.1215 0.3977 17 6 0.9660 -4.7778 -0.1547 18 6 1.6052 -3.5979 0.2599 19 6 2.5503 -3.6262 1.4333 20 8 1.8232 -3.3712 2.6368 21 1 -0.4850 0.8400 0.0004 22 1 0.7893 -1.0780 -2.9566 23 1 -0.8193 -3.4971 -2.7586 24 1 0.3015 -8.0711 0.0692 25 1 1.6965 -6.3550 1.2449 26 1 3.0233 -4.6062 1.4954 27 1 3.3155 -2.8611 1.3020 28 1 2.3697 -3.3739 3.4346 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396333277.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:14 Heat of formation + Delta-G solvation = -73.379803 kcal Electronic energy + Delta-G solvation = -16001.737073 eV Core-core repulsion = 13301.213097 eV Total energy + Delta-G solvation = -2700.523976 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47038 -38.13790 -37.23288 -35.57501 -34.41252 -32.25471 -29.83044 -27.33749 -26.19302 -23.97495 -22.07605 -21.40978 -19.16383 -18.50477 -18.07745 -17.72378 -17.12115 -16.64749 -15.71156 -15.41540 -14.87823 -14.64714 -14.54025 -14.09205 -13.85853 -13.51723 -12.95263 -12.91384 -12.84318 -12.54726 -12.06154 -11.91795 -11.63110 -11.43647 -10.87362 -10.70616 -10.58614 -10.07058 -8.91557 -8.63248 -8.37067 -6.26067 0.13669 0.72564 0.94901 1.34008 1.41922 1.45659 1.53072 1.69184 2.26540 2.71159 3.33584 3.80820 4.00767 4.11508 4.23179 4.49963 4.57503 4.68438 4.80157 4.93557 5.07372 5.26441 5.34074 5.43789 5.58290 5.78103 5.96273 6.16242 6.46695 6.76646 6.96258 7.16780 7.40034 8.46116 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.008545 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.832203 B = 3275.944701 C = 4028.013107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.056 3.944 3 Si 0.974 3.026 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.082 0.918 9 C 0.092 3.908 10 C 0.070 3.930 11 O -0.479 6.479 12 C -0.114 4.114 13 C -0.238 4.238 14 S 0.038 5.962 15 C -0.183 4.183 16 C -0.132 4.132 17 C -0.048 4.048 18 C -0.197 4.197 19 C 0.152 3.848 20 O -0.586 6.586 21 H 0.283 0.717 22 H 0.372 0.628 23 H 0.114 0.886 24 H 0.197 0.803 25 H 0.153 0.847 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 -6.481 -0.420 7.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.163 4.163 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.522 4.522 8 H 0.100 0.900 9 C 0.088 3.912 10 C 0.023 3.977 11 O -0.286 6.286 12 C -0.137 4.137 13 C -0.352 4.352 14 S 0.297 5.703 15 C -0.316 4.316 16 C -0.163 4.163 17 C -0.055 4.055 18 C -0.201 4.201 19 C 0.076 3.924 20 O -0.393 6.393 21 H 0.093 0.907 22 H 0.225 0.775 23 H 0.132 0.868 24 H 0.214 0.786 25 H 0.171 0.829 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.099 -6.870 -1.410 7.320 hybrid contribution 1.732 1.453 0.899 2.433 sum 3.831 -5.417 -0.511 6.654 Atomic orbital electron populations 1.69845 1.09357 1.30293 1.32677 1.26443 0.94911 1.03583 0.91347 0.85394 0.78712 0.76413 0.79939 1.18054 1.20273 1.18819 1.19344 0.98900 0.92106 1.41860 0.90039 1.17900 0.89728 0.93116 0.90414 1.18313 1.00466 0.84275 0.94629 1.84942 1.62728 1.37359 1.43582 1.20196 1.01618 0.90910 1.00934 1.22116 1.09627 0.97706 1.05776 1.83233 1.52024 0.99166 1.35867 1.25147 1.02203 1.04199 1.00060 1.21083 1.02700 0.90416 1.02096 1.19312 0.96992 0.94074 0.95102 1.19556 1.08263 0.92376 0.99948 1.20540 0.91554 0.98148 0.82186 1.86662 1.40199 1.95254 1.17184 0.90714 0.77461 0.86829 0.78606 0.82931 0.92690 0.93669 0.76914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.53 11.26 21.82 0.25 -43.28 15 2 C 0.06 2.80 4.40 85.22 0.37 3.18 15 3 Si 0.97 38.32 29.60 68.60 2.03 40.35 15 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 5 H -0.28 -10.71 7.11 99.48 0.71 -10.00 15 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 7 C -0.49 -25.78 7.99 23.37 0.19 -25.59 15 8 H 0.08 4.06 6.67 -2.91 -0.02 4.04 15 9 C 0.09 4.91 5.34 -21.33 -0.11 4.80 15 10 C 0.07 3.60 6.13 22.66 0.14 3.74 15 11 O -0.48 -23.10 10.39 -90.86 -0.94 -24.04 15 12 C -0.11 -5.43 9.91 22.30 0.22 -5.21 15 13 C -0.24 -10.83 6.50 23.25 0.15 -10.67 15 14 S 0.04 1.35 23.23 -56.49 -1.31 0.04 15 15 C -0.18 -5.73 11.00 67.19 0.74 -4.99 15 16 C -0.13 -4.79 9.79 23.55 0.23 -4.55 15 17 C -0.05 -2.20 5.97 -20.34 -0.12 -2.32 15 18 C -0.20 -9.67 5.63 -18.93 -0.11 -9.77 15 19 C 0.15 6.27 6.60 71.23 0.47 6.74 15 20 O -0.59 -24.27 13.64 -148.98 -2.03 -26.31 15 21 H 0.28 14.32 8.30 -92.71 -0.77 13.55 15 22 H 0.37 14.25 9.06 -74.05 -0.67 13.58 15 23 H 0.11 4.94 8.06 -2.91 -0.02 4.91 15 24 H 0.20 4.30 8.06 -2.91 -0.02 4.28 15 25 H 0.15 4.70 7.52 -2.91 -0.02 4.68 15 26 H 0.06 1.89 7.25 -2.39 -0.02 1.87 15 27 H 0.05 1.84 6.40 -2.38 -0.02 1.83 15 28 H 0.38 10.85 9.12 -74.06 -0.68 10.17 15 Total: -1.00 -67.29 259.12 0.04 -67.24 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.12 Total: 30.65 kcal Atomic # 6 Polarization: -46.82 SS G_CDS: 2.17 Total: -44.65 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.25 Total: -43.28 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -2.98 Total: -50.35 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.31 Total: 0.04 kcal Total: -67.29 0.04 -67.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333277.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.136 kcal (2) G-P(sol) polarization free energy of solvation -67.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds