Wall clock time and date at job start Mon Mar 30 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86804 * 120.00320 * 2 1 4 4 H 1.48502 * 109.46980 * 269.99966 * 3 2 1 5 5 H 1.48502 * 109.46504 * 29.99605 * 3 2 1 6 6 H 1.48499 * 109.47211 * 150.00046 * 3 2 1 7 7 C 1.39911 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00688 * 162.59751 * 7 2 1 9 9 C 1.40962 * 120.00127 * 342.59142 * 7 2 1 10 10 C 1.40479 * 120.10333 * 334.46827 * 9 7 2 11 11 C 1.37845 * 119.88676 * 180.02562 * 10 9 7 12 12 C 1.37844 * 120.73513 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.54704 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.46940 * 359.97438 * 13 12 11 15 15 C 1.41336 * 120.90409 * 359.97438 * 12 11 10 16 16 C 1.45451 * 129.10767 * 179.97438 * 15 12 11 17 17 C 1.32530 * 114.76004 * 180.02562 * 16 15 12 18 18 O 1.35740 * 124.36713 * 180.02562 * 17 16 15 19 19 S 1.75296 * 111.26915 * 0.02562 * 17 16 15 20 20 C 1.39442 * 119.00346 * 0.02562 * 15 12 11 21 21 H 0.96999 * 120.00512 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.05840 * 359.97438 * 10 9 7 23 23 H 1.07994 * 119.62971 * 179.71724 * 11 10 9 24 24 H 1.08995 * 109.47196 * 119.99408 * 13 12 11 25 25 H 1.09005 * 109.46637 * 239.99765 * 13 12 11 26 26 H 0.96702 * 113.99799 * 180.02562 * 14 13 12 27 27 H 1.08004 * 122.62273 * 0.05082 * 16 15 12 28 28 H 0.96697 * 114.00188 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6526 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0083 -1.2116 0.0005 8 1 3.0512 -1.2333 -0.2792 9 6 1.3519 -2.4043 0.3663 10 6 0.2316 -2.3610 1.2127 11 6 -0.4065 -3.5301 1.5680 12 6 0.0417 -4.7472 1.1012 13 6 -0.6758 -6.0087 1.5071 14 8 -1.7694 -5.6794 2.3659 15 6 1.1650 -4.8282 0.2472 16 6 1.7852 -6.0035 -0.3439 17 6 2.8377 -5.7504 -1.1086 18 8 3.5616 -6.6998 -1.7544 19 16 3.1743 -4.0315 -1.1785 20 6 1.8206 -3.6538 -0.1207 21 1 -0.4851 0.8400 0.0004 22 1 -0.1287 -1.4134 1.5852 23 1 -1.2646 -3.4923 2.2226 24 1 -1.0514 -6.5152 0.6180 25 1 0.0153 -6.6659 2.0350 26 1 -2.2773 -6.4451 2.6673 27 1 1.4167 -7.0043 -0.1734 28 1 4.2993 -6.3480 -2.2713 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396333349.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:07 Heat of formation + Delta-G solvation = -82.982657 kcal Electronic energy + Delta-G solvation = -15486.626215 eV Core-core repulsion = 12785.685828 eV Total energy + Delta-G solvation = -2700.940387 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.17344 -39.02373 -37.52012 -36.11145 -34.29809 -32.23832 -29.47108 -28.36923 -25.29822 -24.09445 -22.31196 -21.54549 -20.13523 -18.74133 -18.12213 -17.34203 -16.76555 -16.44884 -15.79177 -15.66278 -15.34173 -15.13552 -14.68084 -14.51739 -13.80386 -13.57118 -13.38103 -12.90239 -12.77308 -12.67501 -12.12520 -11.86876 -11.55871 -11.29672 -11.24159 -11.22037 -10.78123 -9.89396 -8.89465 -8.70680 -8.48372 -6.37098 0.23090 0.54356 0.82058 1.23560 1.35885 1.40332 1.51419 1.73069 2.16866 2.66839 2.86801 3.53870 3.59940 4.31785 4.44369 4.52901 4.66934 4.73957 4.74952 4.93705 5.02014 5.22414 5.44424 5.52785 5.73134 5.90717 6.09398 6.19665 6.39432 6.56698 6.77383 6.85264 7.09430 8.23914 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.009241 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.946906 B = 3029.170230 C = 4449.858774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.039 3.961 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.486 4.486 8 H 0.077 0.923 9 C 0.123 3.877 10 C -0.203 4.203 11 C -0.066 4.066 12 C -0.207 4.207 13 C 0.150 3.850 14 O -0.586 6.586 15 C -0.022 4.022 16 C -0.203 4.203 17 C 0.055 3.945 18 O -0.441 6.441 19 S 0.040 5.960 20 C -0.251 4.251 21 H 0.293 0.707 22 H 0.108 0.892 23 H 0.112 0.888 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.395 0.605 27 H 0.154 0.846 28 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 -7.102 -0.864 7.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.182 1.182 7 C -0.514 4.514 8 H 0.095 0.905 9 C 0.118 3.882 10 C -0.225 4.225 11 C -0.085 4.085 12 C -0.210 4.210 13 C 0.072 3.928 14 O -0.394 6.394 15 C -0.029 4.029 16 C -0.233 4.233 17 C -0.106 4.106 18 O -0.248 6.248 19 S 0.297 5.703 20 C -0.365 4.365 21 H 0.103 0.897 22 H 0.126 0.874 23 H 0.130 0.870 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.244 0.756 27 H 0.172 0.828 28 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.827 -5.994 -1.489 7.266 hybrid contribution -0.700 -0.150 0.456 0.848 sum 3.128 -6.144 -1.034 6.971 Atomic orbital electron populations 1.69892 1.09091 1.31066 1.33627 1.26781 0.95482 1.04574 0.90996 0.85198 0.79183 0.75663 0.79730 1.18436 1.18706 1.18152 1.19695 0.98054 0.92276 1.41419 0.90461 1.17288 0.91753 0.90240 0.88956 1.21109 1.00753 0.97289 1.03382 1.20484 0.98072 0.91951 0.97971 1.19190 0.99687 0.95159 1.07004 1.20476 0.87098 0.92911 0.92281 1.86452 1.45684 1.38704 1.68529 1.18526 0.95816 0.90589 0.97964 1.20339 0.99049 0.99148 1.04802 1.22386 0.97141 0.91509 0.99608 1.84749 1.45629 1.30682 1.63738 1.83474 1.34031 0.98053 1.54781 1.22488 1.04973 0.97765 1.11294 0.89662 0.87414 0.86990 0.92882 0.92522 0.75563 0.82848 0.72679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.22 10.98 21.82 0.24 -41.98 15 2 C 0.04 1.93 5.13 85.24 0.44 2.36 15 3 Si 0.98 37.58 29.59 68.60 2.03 39.61 15 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 15 5 H -0.26 -9.50 7.11 99.48 0.71 -8.80 15 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 7 C -0.49 -26.07 8.82 23.34 0.21 -25.87 15 8 H 0.08 4.02 7.75 -2.91 -0.02 3.99 15 9 C 0.12 6.78 5.59 -21.12 -0.12 6.66 15 10 C -0.20 -11.05 8.67 22.72 0.20 -10.85 15 11 C -0.07 -3.25 9.31 22.08 0.21 -3.05 15 12 C -0.21 -9.41 5.96 -19.19 -0.11 -9.52 15 13 C 0.15 5.17 7.01 71.24 0.50 5.67 15 14 O -0.59 -18.87 12.07 -148.98 -1.80 -20.66 15 15 C -0.02 -1.02 5.97 -20.37 -0.12 -1.14 15 16 C -0.20 -7.87 9.98 22.98 0.23 -7.64 15 17 C 0.05 1.94 7.51 66.68 0.50 2.44 15 18 O -0.44 -11.97 13.64 -90.64 -1.24 -13.21 15 19 S 0.04 1.62 22.75 -56.49 -1.29 0.33 15 20 C -0.25 -12.58 6.36 23.51 0.15 -12.43 15 21 H 0.29 13.63 8.30 -92.71 -0.77 12.86 15 22 H 0.11 6.06 6.19 -2.91 -0.02 6.04 15 23 H 0.11 5.27 6.92 -2.91 -0.02 5.25 15 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.06 1.74 8.14 -2.38 -0.02 1.72 15 26 H 0.39 7.66 9.12 -74.06 -0.68 6.99 15 27 H 0.15 5.12 8.02 -2.91 -0.02 5.09 15 28 H 0.42 7.00 9.01 -74.06 -0.67 6.33 15 Total: -1.00 -65.89 262.25 -0.09 -65.99 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.11 Total: 23.29 kcal Atomic # 6 Polarization: -55.44 SS G_CDS: 2.07 Total: -53.37 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.24 Total: -41.98 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -3.04 Total: -33.87 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.29 Total: 0.33 kcal Total: -65.89 -0.09 -65.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333349.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.994 kcal (2) G-P(sol) polarization free energy of solvation -65.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds