Wall clock time and date at job start Mon Mar 30 2020 06:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86793 * 119.99905 * 2 1 4 4 H 1.48500 * 109.47243 * 268.07601 * 3 2 1 5 5 H 1.48504 * 109.47410 * 28.07911 * 3 2 1 6 6 H 1.48504 * 109.46956 * 148.07937 * 3 2 1 7 7 C 1.39893 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00299 * 341.97768 * 7 2 1 9 9 C 1.40866 * 119.99503 * 161.97612 * 7 2 1 10 10 C 1.40358 * 120.24044 * 330.33642 * 9 7 2 11 11 C 1.38764 * 120.05743 * 179.97438 * 10 9 7 12 12 S 1.76074 * 130.39188 * 179.97438 * 11 10 9 13 13 C 1.75466 * 91.56060 * 180.02562 * 12 11 10 14 14 C 1.50696 * 124.56067 * 180.02562 * 13 12 11 15 15 O 1.42899 * 109.46953 * 269.97223 * 14 13 12 16 16 C 1.32437 * 110.87735 * 0.02562 * 13 12 11 17 17 C 1.40438 * 120.26098 * 359.97438 * 11 10 9 18 18 C 1.41816 * 119.08144 * 359.96214 * 17 11 10 19 19 C 1.35773 * 120.82446 * 0.02562 * 18 17 11 20 20 O 1.35831 * 119.87485 * 180.02562 * 19 18 17 21 21 H 0.97002 * 120.00115 * 0.02562 * 1 2 3 22 22 H 1.08006 * 119.97231 * 359.97290 * 10 9 7 23 23 H 1.08999 * 109.47544 * 29.97239 * 14 13 12 24 24 H 1.09004 * 109.47378 * 149.97213 * 14 13 12 25 25 H 0.96705 * 114.00278 * 179.97438 * 15 14 13 26 26 H 1.08001 * 122.05868 * 180.02562 * 16 13 12 27 27 H 1.08002 * 119.58440 * 179.72513 * 18 17 11 28 28 H 0.96700 * 114.00099 * 84.67245 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.5313 2.0229 -1.3993 5 1 1.4208 2.6641 0.6590 6 1 3.5197 1.4522 0.7403 7 6 2.0085 -1.2116 0.0005 8 1 1.5082 -2.1238 0.2903 9 6 3.3653 -1.2416 -0.3769 10 6 3.8630 -0.3092 -1.3004 11 6 5.2003 -0.3419 -1.6692 12 16 6.1012 0.6785 -2.7860 13 6 7.5814 -0.2136 -2.4823 14 6 8.9094 0.0889 -3.1272 15 8 9.0303 -0.6563 -4.3406 16 6 7.3745 -1.1883 -1.6100 17 6 6.0621 -1.3060 -1.1213 18 6 5.5461 -2.2411 -0.1883 19 6 4.2382 -2.2120 0.1751 20 8 3.7646 -3.1166 1.0708 21 1 -0.4850 0.8400 -0.0004 22 1 3.2044 0.4345 -1.7244 23 1 8.9721 1.1545 -3.3475 24 1 9.7151 -0.1898 -2.4480 25 1 9.8627 -0.5102 -4.8106 26 1 8.1659 -1.8511 -1.2925 27 1 6.2007 -2.9888 0.2348 28 1 3.8973 -2.8624 1.9943 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396333919.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:05 Heat of formation + Delta-G solvation = -83.470729 kcal Electronic energy + Delta-G solvation = -15423.031566 eV Core-core repulsion = 12722.070014 eV Total energy + Delta-G solvation = -2700.961552 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62517 -38.50842 -37.52202 -36.31609 -34.68242 -31.92193 -30.70167 -28.41996 -25.52414 -24.00052 -23.00204 -21.08910 -19.62405 -18.89337 -18.36882 -18.01115 -16.98807 -16.69635 -16.26246 -15.46578 -15.40243 -14.94117 -14.71457 -14.42884 -14.24515 -13.83939 -13.45787 -12.89602 -12.83589 -12.53827 -12.33502 -11.91610 -11.69413 -11.54746 -11.33342 -10.93578 -10.80971 -10.38863 -9.27071 -9.09419 -8.56663 -6.58534 -0.09498 0.50887 0.75006 1.13503 1.21711 1.24644 1.35979 1.52741 2.01436 2.44939 3.16579 3.49941 3.73978 4.00434 4.15098 4.32642 4.46525 4.53998 4.65539 4.72350 4.96255 5.04410 5.13776 5.23216 5.49821 5.65946 5.75792 5.93919 6.10910 6.38273 6.58807 6.97199 7.16469 7.96710 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.028481 B = 0.007788 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.859475 B = 3594.235439 C = 4351.965313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.054 3.946 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.441 4.441 8 H 0.073 0.927 9 C 0.073 3.927 10 C -0.251 4.251 11 C -0.087 4.087 12 S 0.028 5.972 13 C -0.221 4.221 14 C 0.160 3.840 15 O -0.590 6.590 16 C -0.065 4.065 17 C -0.194 4.194 18 C -0.070 4.070 19 C 0.023 3.977 20 O -0.500 6.500 21 H 0.301 0.699 22 H 0.103 0.897 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.400 0.600 26 H 0.159 0.841 27 H 0.144 0.856 28 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.089 3.081 -1.442 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.165 4.165 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.470 4.470 8 H 0.091 0.909 9 C 0.067 3.933 10 C -0.277 4.277 11 C -0.202 4.202 12 S 0.290 5.710 13 C -0.336 4.336 14 C 0.081 3.919 15 O -0.399 6.399 16 C -0.095 4.095 17 C -0.200 4.200 18 C -0.091 4.091 19 C -0.023 4.023 20 O -0.310 6.310 21 H 0.112 0.888 22 H 0.121 0.879 23 H 0.084 0.916 24 H 0.108 0.892 25 H 0.251 0.749 26 H 0.176 0.824 27 H 0.161 0.839 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 13.768 3.865 -2.679 14.549 hybrid contribution 0.371 -0.221 1.149 1.228 sum 14.139 3.644 -1.530 14.681 Atomic orbital electron populations 1.69719 1.08999 1.32240 1.33445 1.26847 0.95352 1.04014 0.90261 0.85567 0.79352 0.76861 0.79691 1.19092 1.19178 1.17909 1.19390 0.93602 0.96034 1.37926 0.90918 1.17989 0.93318 0.91070 0.90912 1.20216 0.93563 1.07441 1.06495 1.22561 0.97494 0.99555 1.00585 1.83666 1.02303 1.37101 1.47951 1.23725 0.98717 1.04152 1.07009 1.20395 0.90406 0.95174 0.85960 1.86567 1.45307 1.70185 1.37889 1.19909 0.95496 0.97419 0.96634 1.18025 0.93936 1.01384 1.06689 1.20831 0.94182 0.97263 0.96805 1.18063 0.91220 0.95179 0.97806 1.84732 1.83398 1.43876 1.19021 0.88779 0.87923 0.91617 0.89175 0.74922 0.82379 0.83874 0.75363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.07 13.93 21.82 0.30 -42.77 15 2 C 0.05 2.81 5.40 85.23 0.46 3.27 15 3 Si 0.96 42.45 24.62 68.60 1.69 44.14 15 4 H -0.26 -11.64 6.35 99.48 0.63 -11.01 15 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 6 H -0.26 -11.53 7.10 99.48 0.71 -10.82 15 7 C -0.44 -24.14 9.17 23.31 0.21 -23.92 15 8 H 0.07 4.29 7.88 -2.91 -0.02 4.27 15 9 C 0.07 3.76 5.12 -21.26 -0.11 3.65 15 10 C -0.25 -12.54 7.34 22.91 0.17 -12.37 15 11 C -0.09 -3.95 6.46 22.93 0.15 -3.80 15 12 S 0.03 1.06 23.26 -56.49 -1.31 -0.25 15 13 C -0.22 -7.25 6.05 24.57 0.15 -7.10 15 14 C 0.16 3.63 7.49 71.23 0.53 4.16 15 15 O -0.59 -13.78 13.64 -148.98 -2.03 -15.81 15 16 C -0.06 -2.22 9.96 21.71 0.22 -2.00 15 17 C -0.19 -8.04 5.89 -21.30 -0.13 -8.16 15 18 C -0.07 -2.84 9.91 22.58 0.22 -2.62 15 19 C 0.02 1.05 6.66 22.56 0.15 1.20 15 20 O -0.50 -20.69 12.81 -91.65 -1.17 -21.87 15 21 H 0.30 14.08 8.30 -92.71 -0.77 13.31 15 22 H 0.10 5.21 4.47 -2.91 -0.01 5.19 15 23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.09 1.51 8.14 -2.38 -0.02 1.49 15 25 H 0.40 4.47 9.12 -74.05 -0.68 3.80 15 26 H 0.16 4.27 8.06 -2.91 -0.02 4.24 15 27 H 0.14 4.70 8.06 -2.91 -0.02 4.68 15 28 H 0.39 12.18 9.06 -74.06 -0.67 11.51 15 Total: -1.00 -65.58 259.49 -0.69 -66.27 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.19 Total: 17.99 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 2.03 Total: -47.70 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.30 Total: -42.77 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -3.21 Total: -37.68 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.69 Total: 44.14 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -1.31 Total: -0.25 kcal Total: -65.58 -0.69 -66.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333919.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.201 kcal (2) G-P(sol) polarization free energy of solvation -65.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds