Wall clock time and date at job start Mon Mar 30 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48497 * 109.46965 * 269.99434 * 3 2 1 5 5 H 1.48493 * 109.47451 * 30.00080 * 3 2 1 6 6 H 1.48502 * 109.46832 * 150.00190 * 3 2 1 7 7 C 1.40044 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99555 * 180.02562 * 7 2 1 9 9 C 1.39656 * 120.00601 * 359.97438 * 7 2 1 10 10 S 1.75422 * 124.83882 * 0.04097 * 9 7 2 11 11 C 1.75969 * 91.91316 * 179.97438 * 10 9 7 12 12 C 1.39638 * 130.12393 * 179.97438 * 11 10 9 13 13 C 1.37712 * 120.30433 * 179.13677 * 12 11 10 14 14 C 1.38878 * 120.19323 * 0.81371 * 13 12 11 15 15 C 1.50700 * 119.70271 * 179.51495 * 14 13 12 16 16 O 1.42899 * 109.47172 * 269.98030 * 15 14 13 17 17 C 1.36010 * 120.60128 * 359.49053 * 14 13 12 18 18 C 1.40126 * 110.12978 * 359.74300 * 11 10 9 19 19 C 1.37619 * 124.84710 * 180.02562 * 9 7 2 20 20 O 1.35632 * 122.62795 * 0.03878 * 19 9 7 21 21 H 0.97001 * 119.99778 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.84489 * 0.02562 * 12 11 10 23 23 H 1.08009 * 119.90380 * 180.28833 * 13 12 11 24 24 H 1.08996 * 109.47420 * 29.97588 * 15 14 13 25 25 H 1.09002 * 109.47676 * 149.97786 * 15 14 13 26 26 H 0.96697 * 114.00824 * 179.97438 * 16 15 14 27 27 H 1.07995 * 119.75019 * 179.97438 * 17 14 13 28 28 H 0.96700 * 114.00200 * 90.02625 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4402 0.7000 7 6 2.0092 -1.2129 0.0005 8 1 3.0893 -1.2128 0.0010 9 6 1.3110 -2.4223 0.0016 10 16 -0.4370 -2.5704 0.0014 11 6 -0.3471 -4.3278 0.0024 12 6 -1.3675 -5.2810 0.0032 13 6 -1.0637 -6.6241 -0.0139 14 6 0.2612 -7.0406 -0.0152 15 6 0.5810 -8.5133 -0.0230 16 8 0.6815 -8.9860 1.3218 17 6 1.2727 -6.1314 -0.0099 18 6 0.9915 -4.7422 -0.0030 19 6 1.8960 -3.6680 0.0027 20 8 3.2408 -3.8444 0.0037 21 1 -0.4850 0.8401 -0.0004 22 1 -2.3997 -4.9634 0.0029 23 1 -1.8581 -7.3559 -0.0179 24 1 -0.2114 -9.0544 -0.5400 25 1 1.5280 -8.6768 -0.5373 26 1 0.8856 -9.9285 1.3933 27 1 2.2981 -6.4706 -0.0106 28 1 3.6302 -3.8954 0.8873 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396334164.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:30 Heat of formation + Delta-G solvation = -78.991473 kcal Electronic energy + Delta-G solvation = -15350.858406 eV Core-core repulsion = 12650.091090 eV Total energy + Delta-G solvation = -2700.767317 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.67175 -36.88083 -35.78709 -34.38237 -32.29717 -30.32407 -29.25086 -25.95609 -24.77152 -21.81186 -21.14391 -19.10711 -18.04750 -17.17337 -16.30709 -16.00745 -15.44114 -14.74936 -14.40371 -13.98854 -13.62960 -12.84149 -12.82714 -12.66019 -12.30693 -11.90150 -11.82600 -11.63898 -11.09108 -10.75208 -10.55686 -10.34740 -10.16692 -9.80406 -9.35368 -9.28469 -8.96169 -8.38713 -7.48538 -7.25440 -6.37575 -4.68390 2.02176 2.24476 2.77188 2.81802 2.88618 3.17078 3.39781 3.53096 3.75351 4.44201 4.73529 5.06395 5.42724 5.46322 5.73584 5.87863 5.95784 6.09810 6.43471 6.59607 6.68400 6.86230 7.11971 7.16304 7.42294 7.50594 7.60618 7.79867 7.85970 7.96401 8.11408 8.33424 9.16412 9.56969 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.043886 B = 0.006262 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.864622 B = 4470.590827 C = 5020.949928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.050 3.950 3 Si 0.942 3.058 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.365 4.365 8 H 0.103 0.897 9 C 0.028 3.972 10 S 0.160 5.840 11 C -0.256 4.256 12 C -0.057 4.057 13 C -0.173 4.173 14 C -0.090 4.090 15 C 0.124 3.876 16 O -0.567 6.567 17 C -0.116 4.116 18 C -0.002 4.002 19 C -0.163 4.163 20 O -0.469 6.469 21 H 0.303 0.697 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.369 0.631 27 H 0.104 0.896 28 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 -4.579 0.448 4.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.172 4.172 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.398 4.398 8 H 0.121 0.879 9 C -0.092 4.092 10 S 0.420 5.580 11 C -0.370 4.370 12 C -0.079 4.079 13 C -0.193 4.193 14 C -0.092 4.092 15 C 0.047 3.953 16 O -0.372 6.372 17 C -0.136 4.136 18 C -0.010 4.010 19 C -0.213 4.213 20 O -0.274 6.274 21 H 0.116 0.884 22 H 0.123 0.877 23 H 0.123 0.877 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.215 0.785 27 H 0.122 0.878 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.075 -2.741 -0.065 3.438 hybrid contribution 1.664 -0.972 0.382 1.965 sum -0.411 -3.712 0.317 3.748 Atomic orbital electron populations 1.68670 1.07798 1.31249 1.32228 1.26393 0.95166 1.03214 0.92408 0.85693 0.80080 0.77871 0.79884 1.18682 1.19520 1.17906 1.19255 0.96112 0.88358 1.36114 0.87873 1.21704 0.95645 0.95803 0.96071 1.84785 1.03397 0.91402 1.78456 1.23448 0.96073 1.02728 1.14781 1.20162 0.96544 0.91774 0.99469 1.20332 0.94830 0.94808 1.09354 1.18729 0.93788 0.92713 1.03984 1.20973 0.98930 0.92359 0.83006 1.86645 1.94442 1.28713 1.27416 1.20327 0.97519 0.91407 1.04342 1.18075 0.92411 0.93009 0.97540 1.16858 0.82550 0.89162 1.32774 1.84890 1.17831 1.94727 1.29938 0.88397 0.87654 0.87721 0.93584 0.93569 0.78496 0.87798 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.85 10.58 55.56 0.59 -17.26 15 2 C 0.05 1.13 5.50 -17.27 -0.09 1.04 15 3 Si 0.94 16.92 29.56 -169.99 -5.03 11.89 15 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 5 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 6 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 7 C -0.36 -9.14 9.08 -38.38 -0.35 -9.49 15 8 H 0.10 2.50 7.71 -52.48 -0.40 2.10 15 9 C 0.03 0.74 6.12 -39.28 -0.24 0.50 15 10 S 0.16 3.94 20.10 -107.50 -2.16 1.78 15 11 C -0.26 -6.26 6.46 -38.35 -0.25 -6.51 15 12 C -0.06 -1.24 10.07 -39.25 -0.40 -1.63 15 13 C -0.17 -3.48 9.68 -39.54 -0.38 -3.87 15 14 C -0.09 -1.84 5.46 -105.19 -0.57 -2.41 15 15 C 0.12 1.97 7.15 36.01 0.26 2.23 15 16 O -0.57 -8.86 13.64 -35.23 -0.48 -9.34 15 17 C -0.12 -2.65 9.57 -39.04 -0.37 -3.03 15 18 C 0.00 -0.06 5.86 -107.02 -0.63 -0.68 15 19 C -0.16 -4.28 6.85 -38.98 -0.27 -4.55 15 20 O -0.47 -11.47 13.15 -18.60 -0.24 -11.71 15 21 H 0.30 6.20 8.30 -40.82 -0.34 5.86 15 22 H 0.11 2.00 8.06 -52.48 -0.42 1.58 15 23 H 0.10 1.80 8.06 -52.48 -0.42 1.38 15 24 H 0.05 0.62 8.08 -51.93 -0.42 0.20 15 25 H 0.05 0.66 8.07 -51.93 -0.42 0.24 15 26 H 0.37 3.52 9.12 45.56 0.42 3.93 15 27 H 0.10 2.26 8.06 -52.49 -0.42 1.83 15 28 H 0.33 6.80 9.06 45.56 0.41 7.21 15 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -29.97 264.67 -7.45 -37.42 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.82 Total: 11.65 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -3.29 Total: -28.40 kcal Atomic # 7 Polarization: -17.85 SS G_CDS: 0.59 Total: -17.26 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.73 Total: -21.06 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.16 Total: 1.78 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.97 -7.45 -37.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334164.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.575 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds