Wall clock time and date at job start Mon Mar 30 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48497 * 109.46965 * 269.99434 * 3 2 1 5 5 H 1.48493 * 109.47451 * 30.00080 * 3 2 1 6 6 H 1.48502 * 109.46832 * 150.00190 * 3 2 1 7 7 C 1.40044 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99555 * 180.02562 * 7 2 1 9 9 C 1.39656 * 120.00601 * 359.97438 * 7 2 1 10 10 S 1.75422 * 124.83882 * 0.04097 * 9 7 2 11 11 C 1.75969 * 91.91316 * 179.97438 * 10 9 7 12 12 C 1.39638 * 130.12393 * 179.97438 * 11 10 9 13 13 C 1.37712 * 120.30433 * 179.13677 * 12 11 10 14 14 C 1.38878 * 120.19323 * 0.81371 * 13 12 11 15 15 C 1.50700 * 119.70271 * 179.51495 * 14 13 12 16 16 O 1.42899 * 109.47172 * 269.98030 * 15 14 13 17 17 C 1.36010 * 120.60128 * 359.49053 * 14 13 12 18 18 C 1.40126 * 110.12978 * 359.74300 * 11 10 9 19 19 C 1.37619 * 124.84710 * 180.02562 * 9 7 2 20 20 O 1.35632 * 122.62795 * 0.03878 * 19 9 7 21 21 H 0.97001 * 119.99778 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.84489 * 0.02562 * 12 11 10 23 23 H 1.08009 * 119.90380 * 180.28833 * 13 12 11 24 24 H 1.08996 * 109.47420 * 29.97588 * 15 14 13 25 25 H 1.09002 * 109.47676 * 149.97786 * 15 14 13 26 26 H 0.96697 * 114.00824 * 179.97438 * 16 15 14 27 27 H 1.07995 * 119.75019 * 179.97438 * 17 14 13 28 28 H 0.96700 * 114.00200 * 90.02625 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4402 0.7000 7 6 2.0092 -1.2129 0.0005 8 1 3.0893 -1.2128 0.0010 9 6 1.3110 -2.4223 0.0016 10 16 -0.4370 -2.5704 0.0014 11 6 -0.3471 -4.3278 0.0024 12 6 -1.3675 -5.2810 0.0032 13 6 -1.0637 -6.6241 -0.0139 14 6 0.2612 -7.0406 -0.0152 15 6 0.5810 -8.5133 -0.0230 16 8 0.6815 -8.9860 1.3218 17 6 1.2727 -6.1314 -0.0099 18 6 0.9915 -4.7422 -0.0030 19 6 1.8960 -3.6680 0.0027 20 8 3.2408 -3.8444 0.0037 21 1 -0.4850 0.8401 -0.0004 22 1 -2.3997 -4.9634 0.0029 23 1 -1.8581 -7.3559 -0.0179 24 1 -0.2114 -9.0544 -0.5400 25 1 1.5280 -8.6768 -0.5373 26 1 0.8856 -9.9285 1.3933 27 1 2.2981 -6.4706 -0.0106 28 1 3.6302 -3.8954 0.8873 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396334164.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:30 Heat of formation + Delta-G solvation = -101.061477 kcal Electronic energy + Delta-G solvation = -15351.815433 eV Core-core repulsion = 12650.091090 eV Total energy + Delta-G solvation = -2701.724344 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37262 -38.48532 -37.24289 -36.18289 -34.03358 -31.96552 -31.03904 -27.58853 -26.37002 -23.56929 -22.83281 -20.86601 -19.87320 -18.32788 -18.11598 -17.79234 -17.07132 -16.31287 -16.02216 -15.66156 -15.13556 -14.51874 -14.40419 -14.24016 -13.99117 -13.59625 -13.55532 -13.20926 -12.60906 -12.34230 -12.11679 -12.00268 -11.83891 -11.16808 -10.99468 -10.95996 -10.81599 -10.14997 -9.30100 -8.98035 -8.23114 -6.55889 0.26190 0.54390 1.24247 1.31800 1.34405 1.51582 1.72993 1.81322 2.10749 2.76160 3.03985 3.71562 4.03569 4.12743 4.17452 4.42119 4.50703 4.58091 4.75735 4.84987 4.98168 5.14414 5.40563 5.41948 5.66785 5.76180 5.84480 6.00987 6.16290 6.36382 6.48982 6.98942 7.34052 7.88323 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.043886 B = 0.006262 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.864622 B = 4470.590827 C = 5020.949928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.016 3.984 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.254 1.254 6 H -0.255 1.255 7 C -0.394 4.394 8 H 0.100 0.900 9 C -0.004 4.004 10 S 0.152 5.848 11 C -0.278 4.278 12 C -0.067 4.067 13 C -0.163 4.163 14 C -0.090 4.090 15 C 0.128 3.872 16 O -0.589 6.589 17 C -0.137 4.137 18 C -0.031 4.031 19 C -0.198 4.198 20 O -0.479 6.479 21 H 0.316 0.684 22 H 0.130 0.870 23 H 0.144 0.856 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.397 0.603 27 H 0.105 0.895 28 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -5.347 0.460 5.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.204 4.204 3 Si 0.833 3.167 4 H -0.181 1.181 5 H -0.178 1.178 6 H -0.178 1.178 7 C -0.427 4.427 8 H 0.117 0.883 9 C -0.124 4.124 10 S 0.411 5.589 11 C -0.392 4.392 12 C -0.090 4.090 13 C -0.184 4.184 14 C -0.092 4.092 15 C 0.051 3.949 16 O -0.398 6.398 17 C -0.157 4.157 18 C -0.039 4.039 19 C -0.248 4.248 20 O -0.285 6.285 21 H 0.129 0.871 22 H 0.148 0.852 23 H 0.162 0.838 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.247 0.753 27 H 0.123 0.877 28 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.793 -3.561 -0.044 4.526 hybrid contribution 1.826 -0.900 0.399 2.074 sum -0.968 -4.462 0.355 4.579 Atomic orbital electron populations 1.68677 1.08999 1.32942 1.31251 1.27343 0.95960 1.05973 0.91085 0.84655 0.78675 0.73248 0.80119 1.18118 1.17778 1.17846 1.19517 0.96243 0.89336 1.37603 0.88258 1.22069 0.96709 0.96557 0.97026 1.84441 1.02768 0.92458 1.79264 1.23712 0.96686 1.02869 1.15980 1.20569 0.97150 0.92168 0.99066 1.20852 0.95872 0.94898 1.06749 1.19330 0.93366 0.95265 1.01247 1.20948 1.00872 0.89418 0.83640 1.86552 1.94668 1.31451 1.27091 1.20521 0.98589 0.90936 1.05685 1.18375 0.92806 0.94113 0.98595 1.17171 0.83084 0.89843 1.34710 1.84795 1.17626 1.94772 1.31258 0.87055 0.85248 0.83818 0.90340 0.92255 0.75254 0.87657 0.80159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.81 10.58 21.85 0.23 -36.58 15 2 C 0.02 0.72 5.50 85.27 0.47 1.19 15 3 Si 1.02 34.06 29.56 68.60 2.03 36.09 15 4 H -0.26 -8.37 7.11 99.48 0.71 -7.67 15 5 H -0.25 -7.81 7.11 99.48 0.71 -7.10 15 6 H -0.25 -8.46 7.11 99.48 0.71 -7.75 15 7 C -0.39 -20.42 9.08 23.05 0.21 -20.21 15 8 H 0.10 5.03 7.71 -2.91 -0.02 5.00 15 9 C 0.00 -0.21 6.12 22.47 0.14 -0.07 15 10 S 0.15 7.70 20.10 -56.49 -1.14 6.56 15 11 C -0.28 -13.83 6.46 23.07 0.15 -13.68 15 12 C -0.07 -2.83 10.07 22.48 0.23 -2.60 15 13 C -0.16 -6.13 9.68 22.30 0.22 -5.91 15 14 C -0.09 -3.48 5.46 -20.23 -0.11 -3.59 15 15 C 0.13 3.60 7.15 71.24 0.51 4.11 15 16 O -0.59 -16.35 13.64 -148.98 -2.03 -18.38 15 17 C -0.14 -6.30 9.57 22.62 0.22 -6.08 15 18 C -0.03 -1.63 5.86 -21.42 -0.13 -1.75 15 19 C -0.20 -10.86 6.85 22.66 0.16 -10.70 15 20 O -0.48 -24.45 13.15 -89.46 -1.18 -25.63 15 21 H 0.32 12.77 8.30 -92.71 -0.77 12.00 15 22 H 0.13 4.68 8.06 -2.91 -0.02 4.66 15 23 H 0.14 4.25 8.06 -2.91 -0.02 4.23 15 24 H 0.08 1.72 8.08 -2.39 -0.02 1.70 15 25 H 0.06 1.51 8.07 -2.39 -0.02 1.49 15 26 H 0.40 6.03 9.12 -74.06 -0.68 5.36 15 27 H 0.11 4.63 8.06 -2.91 -0.02 4.61 15 28 H 0.35 14.92 9.06 -74.06 -0.67 14.25 15 Total: -1.00 -66.31 264.67 -0.16 -66.47 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.13 Total: 30.78 kcal Atomic # 6 Polarization: -61.36 SS G_CDS: 2.05 Total: -59.31 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.23 Total: -36.58 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -3.21 Total: -44.01 kcal Atomic # 14 Polarization: 34.06 SS G_CDS: 2.03 Total: 36.09 kcal Atomic # 16 Polarization: 7.70 SS G_CDS: -1.14 Total: 6.56 kcal Total: -66.31 -0.16 -66.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334164.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.590 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds