Wall clock time and date at job start Mon Mar 30 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86801 * 120.00303 * 2 1 4 4 H 1.48504 * 109.47099 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47093 * 29.99476 * 3 2 1 6 6 H 1.48500 * 109.47261 * 149.99416 * 3 2 1 7 7 C 1.39838 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99515 * 198.04161 * 7 2 1 9 9 C 1.41236 * 120.00019 * 18.04102 * 7 2 1 10 10 C 1.39981 * 120.06873 * 24.87165 * 9 7 2 11 11 C 1.40419 * 119.99370 * 180.02562 * 10 9 7 12 12 C 1.45812 * 129.18966 * 180.02562 * 11 10 9 13 13 O 1.36168 * 122.60245 * 0.02562 * 12 11 10 14 14 C 1.31963 * 114.78477 * 179.97438 * 12 11 10 15 15 S 1.75241 * 111.53205 * 359.97438 * 14 12 11 16 16 C 1.40196 * 119.05034 * 359.97438 * 11 10 9 17 17 C 1.40465 * 120.14903 * 359.97438 * 16 11 10 18 18 C 1.50708 * 119.58256 * 179.97438 * 17 16 11 19 19 O 1.42894 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.35688 * 120.83358 * 0.25486 * 17 16 11 21 21 H 0.97005 * 119.99963 * 0.02562 * 1 2 3 22 22 H 1.08007 * 120.00397 * 359.97438 * 10 9 7 23 23 H 0.96700 * 114.00460 * 269.95208 * 13 12 11 24 24 H 1.08003 * 124.23171 * 179.97438 * 14 12 11 25 25 H 1.08996 * 109.47272 * 59.99770 * 18 17 16 26 26 H 1.09002 * 109.46601 * 299.99566 * 18 17 16 27 27 H 0.96700 * 113.99953 * 179.97438 * 19 18 17 28 28 H 1.07991 * 119.94941 * 179.72269 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4406 2.6527 0.6999 6 1 3.5406 1.4401 0.7002 7 6 2.0082 -1.2111 0.0005 8 1 3.0485 -1.2339 0.2903 9 6 1.3541 -2.4043 -0.3777 10 6 0.2375 -2.3551 -1.2205 11 6 -0.4120 -3.5424 -1.5952 12 6 -1.5770 -3.7241 -2.4530 13 8 -2.2255 -2.6807 -3.0403 14 6 -1.9532 -4.9783 -2.6167 15 16 -0.9162 -6.0813 -1.7341 16 6 0.0750 -4.7658 -1.1140 17 6 1.1975 -4.7955 -0.2700 18 6 1.7099 -6.1177 0.2403 19 8 2.8494 -5.8973 1.0739 20 6 1.8228 -3.6483 0.0961 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1250 -1.4041 -1.5819 23 1 -2.9424 -2.3122 -2.5061 24 1 -2.7950 -5.2864 -3.2192 25 1 1.9926 -6.7478 -0.6030 26 1 0.9283 -6.6120 0.8173 27 1 3.2323 -6.7068 1.4387 28 1 2.6819 -3.6874 0.7493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396335157.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:54 Heat of formation + Delta-G solvation = -60.578287 kcal Electronic energy + Delta-G solvation = -15591.090165 eV Core-core repulsion = 12891.121304 eV Total energy + Delta-G solvation = -2699.968861 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.73399 -37.28982 -35.99764 -34.04803 -32.46421 -30.31876 -28.48175 -25.66450 -24.92362 -22.22388 -20.65161 -19.88260 -17.24821 -16.94563 -16.60536 -16.40686 -15.14537 -14.61685 -14.51284 -14.41012 -14.01537 -13.19317 -12.97083 -12.50418 -12.05146 -11.66013 -11.62179 -11.28412 -10.91226 -10.89175 -10.52766 -10.31173 -10.13939 -9.73849 -9.67827 -9.48693 -9.10095 -8.17249 -7.47242 -6.86285 -6.71226 -4.41163 1.76563 2.44142 2.54991 2.91170 3.02819 3.06029 3.08138 3.27822 3.87815 4.43370 4.63804 5.01029 5.40554 5.49173 5.61583 5.83114 5.94029 6.29176 6.45398 6.67786 6.86038 6.98380 7.12669 7.34400 7.47682 7.62846 7.87810 7.90524 8.14435 8.19149 8.47611 8.75525 8.77653 10.08561 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.008880 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.202292 B = 3152.239378 C = 4449.481195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.132 4.132 11 C -0.073 4.073 12 C 0.119 3.881 13 O -0.486 6.486 14 C -0.247 4.247 15 S 0.020 5.980 16 C -0.222 4.222 17 C -0.048 4.048 18 C 0.123 3.877 19 O -0.562 6.562 20 C -0.148 4.148 21 H 0.283 0.717 22 H 0.127 0.873 23 H 0.384 0.616 24 H 0.154 0.846 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.371 0.629 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 -6.276 -0.533 6.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.098 3.902 10 C -0.154 4.154 11 C -0.079 4.079 12 C 0.061 3.939 13 O -0.296 6.296 14 C -0.380 4.380 15 S 0.277 5.723 16 C -0.337 4.337 17 C -0.052 4.052 18 C 0.045 3.955 19 O -0.366 6.366 20 C -0.168 4.168 21 H 0.093 0.907 22 H 0.145 0.855 23 H 0.239 0.761 24 H 0.172 0.828 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.216 0.784 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.397 -7.116 -1.008 7.321 hybrid contribution -0.165 1.763 0.277 1.792 sum -1.562 -5.353 -0.731 5.624 Atomic orbital electron populations 1.69841 1.07640 1.29495 1.34310 1.25935 0.94786 1.01531 0.92177 0.86250 0.80481 0.80240 0.79449 1.19142 1.20244 1.18475 1.19564 0.98379 0.91011 1.39163 0.89910 1.17492 0.91361 0.92241 0.89098 1.21170 0.98883 0.95077 1.00299 1.19113 0.95990 0.94197 0.98556 1.18341 0.93413 0.86433 0.95733 1.84820 1.51146 1.48438 1.45175 1.24650 1.06724 0.96536 1.10092 1.83151 1.28258 1.10099 1.50788 1.21280 1.04745 0.94459 1.13173 1.18221 0.94678 0.93988 0.98332 1.20825 0.87010 0.95299 0.92350 1.86559 1.46605 1.35430 1.68053 1.20690 1.02144 0.91383 1.02616 0.90657 0.85524 0.76140 0.82822 0.93401 0.93438 0.78364 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.93 10.98 55.54 0.61 -19.32 15 2 C 0.07 1.83 5.12 -17.35 -0.09 1.74 15 3 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 15 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.45 -11.79 9.03 -37.85 -0.34 -12.13 15 8 H 0.08 2.07 7.91 -52.48 -0.41 1.66 15 9 C 0.10 2.70 5.56 -107.01 -0.59 2.11 15 10 C -0.13 -3.48 8.74 -38.11 -0.33 -3.81 15 11 C -0.07 -1.78 6.04 -105.31 -0.64 -2.41 15 12 C 0.12 2.52 6.90 -38.47 -0.27 2.26 15 13 O -0.49 -9.41 13.61 -20.28 -0.28 -9.68 15 14 C -0.25 -4.63 10.97 28.82 0.32 -4.31 15 15 S 0.02 0.37 22.91 -107.50 -2.46 -2.09 15 16 C -0.22 -5.08 6.34 -38.01 -0.24 -5.32 15 17 C -0.05 -1.08 5.87 -104.69 -0.61 -1.69 15 18 C 0.12 2.20 7.10 36.01 0.26 2.45 15 19 O -0.56 -9.45 12.06 -35.23 -0.42 -9.87 15 20 C -0.15 -3.65 9.04 -39.40 -0.36 -4.00 15 21 H 0.28 6.48 8.30 -40.82 -0.34 6.14 15 22 H 0.13 3.45 6.15 -52.48 -0.32 3.13 15 23 H 0.38 5.65 9.07 45.56 0.41 6.06 15 24 H 0.15 2.41 8.06 -52.48 -0.42 1.98 15 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 27 H 0.37 3.94 9.12 45.56 0.42 4.36 15 28 H 0.12 2.81 6.90 -52.49 -0.36 2.45 15 LS Contribution 262.95 15.07 3.96 3.96 Total: -1.00 -29.87 262.95 -7.19 -37.06 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.67 Total: 11.72 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -2.90 Total: -25.13 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.61 Total: -19.32 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.70 Total: -19.55 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.46 Total: -2.09 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.87 -7.19 -37.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335157.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.513 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds