Wall clock time and date at job start Mon Mar 30 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86801 * 120.00303 * 2 1 4 4 H 1.48504 * 109.47099 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47093 * 29.99476 * 3 2 1 6 6 H 1.48500 * 109.47261 * 149.99416 * 3 2 1 7 7 C 1.39838 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99515 * 198.04161 * 7 2 1 9 9 C 1.41236 * 120.00019 * 18.04102 * 7 2 1 10 10 C 1.39981 * 120.06873 * 24.87165 * 9 7 2 11 11 C 1.40419 * 119.99370 * 180.02562 * 10 9 7 12 12 C 1.45812 * 129.18966 * 180.02562 * 11 10 9 13 13 O 1.36168 * 122.60245 * 0.02562 * 12 11 10 14 14 C 1.31963 * 114.78477 * 179.97438 * 12 11 10 15 15 S 1.75241 * 111.53205 * 359.97438 * 14 12 11 16 16 C 1.40196 * 119.05034 * 359.97438 * 11 10 9 17 17 C 1.40465 * 120.14903 * 359.97438 * 16 11 10 18 18 C 1.50708 * 119.58256 * 179.97438 * 17 16 11 19 19 O 1.42894 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.35688 * 120.83358 * 0.25486 * 17 16 11 21 21 H 0.97005 * 119.99963 * 0.02562 * 1 2 3 22 22 H 1.08007 * 120.00397 * 359.97438 * 10 9 7 23 23 H 0.96700 * 114.00460 * 269.95208 * 13 12 11 24 24 H 1.08003 * 124.23171 * 179.97438 * 14 12 11 25 25 H 1.08996 * 109.47272 * 59.99770 * 18 17 16 26 26 H 1.09002 * 109.46601 * 299.99566 * 18 17 16 27 27 H 0.96700 * 113.99953 * 179.97438 * 19 18 17 28 28 H 1.07991 * 119.94941 * 179.72269 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4406 2.6527 0.6999 6 1 3.5406 1.4401 0.7002 7 6 2.0082 -1.2111 0.0005 8 1 3.0485 -1.2339 0.2903 9 6 1.3541 -2.4043 -0.3777 10 6 0.2375 -2.3551 -1.2205 11 6 -0.4120 -3.5424 -1.5952 12 6 -1.5770 -3.7241 -2.4530 13 8 -2.2255 -2.6807 -3.0403 14 6 -1.9532 -4.9783 -2.6167 15 16 -0.9162 -6.0813 -1.7341 16 6 0.0750 -4.7658 -1.1140 17 6 1.1975 -4.7955 -0.2700 18 6 1.7099 -6.1177 0.2403 19 8 2.8494 -5.8973 1.0739 20 6 1.8228 -3.6483 0.0961 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1250 -1.4041 -1.5819 23 1 -2.9424 -2.3122 -2.5061 24 1 -2.7950 -5.2864 -3.2192 25 1 1.9926 -6.7478 -0.6030 26 1 0.9283 -6.6120 0.8173 27 1 3.2323 -6.7068 1.4387 28 1 2.6819 -3.6874 0.7493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396335157.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:53 Heat of formation + Delta-G solvation = -82.838624 kcal Electronic energy + Delta-G solvation = -15592.055445 eV Core-core repulsion = 12891.121304 eV Total energy + Delta-G solvation = -2700.934142 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41630 -38.82252 -37.47559 -35.82844 -34.12880 -32.08462 -30.20548 -27.47769 -26.54406 -23.91652 -22.42711 -21.51283 -18.99062 -18.53648 -18.18337 -17.93016 -16.87746 -16.28790 -16.11480 -15.84915 -15.61817 -14.88211 -14.63231 -14.17791 -13.74437 -13.35867 -13.16352 -12.92016 -12.71983 -12.44882 -12.16601 -11.99718 -11.72644 -11.43287 -11.25012 -11.17414 -10.83891 -9.86916 -9.27029 -8.69317 -8.35897 -6.34266 0.08587 0.74119 0.88663 1.23104 1.36729 1.40735 1.50835 1.56800 2.18774 2.59998 3.30430 3.53826 3.60400 3.96879 4.13411 4.38701 4.56422 4.62864 4.78087 4.93701 5.06905 5.18797 5.32427 5.52976 5.67683 5.79759 5.99172 6.15197 6.56504 6.77988 6.83831 6.88049 7.01985 8.27977 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.008880 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.202292 B = 3152.239378 C = 4449.481195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.075 3.925 10 C -0.166 4.166 11 C -0.090 4.090 12 C 0.085 3.915 13 O -0.493 6.493 14 C -0.226 4.226 15 S 0.095 5.905 16 C -0.246 4.246 17 C -0.052 4.052 18 C 0.128 3.872 19 O -0.581 6.581 20 C -0.171 4.171 21 H 0.290 0.710 22 H 0.105 0.895 23 H 0.400 0.600 24 H 0.194 0.806 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.398 0.602 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 -8.065 -0.931 8.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.520 4.520 8 H 0.097 0.903 9 C 0.071 3.929 10 C -0.189 4.189 11 C -0.096 4.096 12 C 0.027 3.973 13 O -0.304 6.304 14 C -0.359 4.359 15 S 0.353 5.647 16 C -0.360 4.360 17 C -0.056 4.056 18 C 0.051 3.949 19 O -0.390 6.390 20 C -0.192 4.192 21 H 0.100 0.900 22 H 0.123 0.877 23 H 0.257 0.743 24 H 0.211 0.789 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.249 0.751 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.004 -8.948 -1.386 9.274 hybrid contribution -0.068 2.100 0.373 2.134 sum -2.072 -6.848 -1.014 7.226 Atomic orbital electron populations 1.69899 1.09031 1.30721 1.34787 1.26785 0.95546 1.04619 0.91168 0.85163 0.79161 0.75678 0.79493 1.18858 1.18963 1.17995 1.19799 0.98558 0.92318 1.41314 0.90255 1.17840 0.92028 0.93360 0.89635 1.21011 1.00341 0.95262 1.02278 1.19572 0.96950 0.94230 0.98860 1.18293 0.93767 0.87841 0.97360 1.84783 1.51749 1.48412 1.45489 1.25164 1.06814 0.95549 1.08389 1.82836 1.25878 1.06916 1.49091 1.21786 1.05226 0.96342 1.12639 1.18768 0.94039 0.95651 0.97144 1.20780 0.87979 0.92586 0.93551 1.86501 1.46393 1.37953 1.68103 1.20753 1.02848 0.91915 1.03670 0.89965 0.87734 0.74286 0.78939 0.91184 0.91388 0.75139 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.31 10.98 21.81 0.24 -43.07 15 2 C 0.03 1.76 5.12 85.22 0.44 2.20 15 3 Si 0.98 38.73 29.60 68.60 2.03 40.76 15 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 5 H -0.27 -9.80 7.11 99.48 0.71 -9.10 15 6 H -0.26 -9.77 7.11 99.48 0.71 -9.07 15 7 C -0.49 -27.08 9.03 23.39 0.21 -26.87 15 8 H 0.08 4.22 7.91 -2.91 -0.02 4.20 15 9 C 0.07 4.21 5.56 -21.41 -0.12 4.09 15 10 C -0.17 -9.24 8.74 23.22 0.20 -9.03 15 11 C -0.09 -4.45 6.04 -20.31 -0.12 -4.57 15 12 C 0.09 3.54 6.90 23.35 0.16 3.70 15 13 O -0.49 -18.84 13.61 -95.46 -1.30 -20.14 15 14 C -0.23 -7.69 10.97 66.94 0.73 -6.95 15 15 S 0.09 3.20 22.91 -56.49 -1.29 1.91 15 16 C -0.25 -10.99 6.34 23.29 0.15 -10.84 15 17 C -0.05 -2.32 5.87 -19.91 -0.12 -2.43 15 18 C 0.13 4.29 7.10 71.24 0.51 4.79 15 19 O -0.58 -18.48 12.06 -148.98 -1.80 -20.28 15 20 C -0.17 -8.77 9.04 22.39 0.20 -8.56 15 21 H 0.29 13.77 8.30 -92.70 -0.77 13.00 15 22 H 0.10 6.10 6.15 -2.91 -0.02 6.08 15 23 H 0.40 11.65 9.07 -74.06 -0.67 10.98 15 24 H 0.19 5.02 8.06 -2.91 -0.02 5.00 15 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.40 7.40 9.12 -74.06 -0.68 6.72 15 28 H 0.11 5.67 6.90 -2.92 -0.02 5.65 15 Total: -1.00 -67.31 262.95 0.00 -67.30 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.12 Total: 28.02 kcal Atomic # 6 Polarization: -56.74 SS G_CDS: 2.24 Total: -54.50 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.24 Total: -43.07 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -3.10 Total: -40.41 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.29 Total: 1.91 kcal Total: -67.31 0.00 -67.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335157.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.535 kcal (2) G-P(sol) polarization free energy of solvation -67.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds